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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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| 7 |
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o pkg/bbl: modification so it can work with z* |
| 8 |
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o eesupp/src: |
| 9 |
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- PRINT_MESSAGE: use OpenMP critical instruction (similar to PRINT_ERROR); |
| 10 |
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writing to unit 0 (if unit=errorMessageUnit) extended to the case myThid=1 |
| 11 |
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- CHECK_THREADS: specific code if using OpenMP threading: improve checking of |
| 12 |
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# of threads across processors (e.g., different env OMP_NUM_THREADS setting) |
| 13 |
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- improve special preliminary call to EESET_PARMS (if eedata is read 2 times). |
| 14 |
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- when using MPI, always set usingMPI=T ; set default accordingly and stop |
| 15 |
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if not consistent. |
| 16 |
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- ALL_PROC_DIE: add a BARRIER after MPI_FINALIZE call ; skip this when thread |
| 17 |
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argument is zero (in case called within single-thread section). |
| 18 |
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o pkg/fizhi: |
| 19 |
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clean-up turbulence cold-start switch: decided in fizhi_init_vars.F, stored |
| 20 |
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in common bloc (fizhi_coms.h) and then passed as argument up to S/R TURBIO. |
| 21 |
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o pkg/exch2: |
| 22 |
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- add argument "updateCorners" to S/R exch2_get_uv_bounds (enable to |
| 23 |
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activate EXCH_IGNORE_CORNERS in vector EXCH S/R). |
| 24 |
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- switch 1rst EXCH call to IGNORE_CORNERS (instead of UPDATE_CORNERS) |
| 25 |
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but keep the 2nd with UPDATE_CORNERS: this prevents overwriting good data |
| 26 |
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with bad ones coming from a not-yet-updated halo. |
| 27 |
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This should fix the problem when sNx <> sNy and GCD(sNx,sNy) < 2*Olx. |
| 28 |
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o pkg/frazil: |
| 29 |
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move FrzForcT diag from frazil_diagnostics_state.F to frazil_calc_rhs.F |
| 30 |
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http://mitgcm.org/pipermail/mitgcm-devel/2012-March/005384.html |
| 31 |
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o model/src/config_check.F: add a check for OLx>sNx/OLy>sNy |
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o verification/lab_sea |
| 33 |
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* #undef SEAICE_EXCLUDE_FOR_EXACT_AD_TESTING |
| 34 |
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* #define ALLOW_SST_CONTROL & ALLOW_SST_CONTROL |
| 35 |
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* nTimeSteps 3 -> 4 |
| 36 |
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* changed reference output accordingly |
| 37 |
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o pkg/ctrl: |
| 38 |
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* fix ctrl_get_gen for xx_sst, xx_sss |
| 39 |
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o pkg/fizhi: |
| 40 |
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- fix 2 calls to S/R GRD2MSC (argument igrd) in update_earth_exports.F |
| 41 |
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update results of exp. fizhi-cs-32x32x40 (fail with only 6 digits for cg2d) |
| 42 |
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- by default, use new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE); |
| 43 |
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fix few out-of-bounds indices in referencing vars (initialise igrd to 1); |
| 44 |
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clean-up fizhi_turb.F (remove unused & uninitialised qdiaglsm array). |
| 45 |
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o pkg/gmredi: |
| 46 |
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- add diagnostic of Redi (main diagnonal) vertical diffusive flux of Temp |
| 47 |
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o pkg/fizhi: |
| 48 |
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- fix few initialisation and multi-tile Pb: aqualev & gridalt now pass the |
| 49 |
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(old)aces open64 tuv test. |
| 50 |
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o pkg/icefront: fix bug and reorder loop in icefront_init_varia.F |
| 51 |
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o pkg/mom_vecinv: |
| 52 |
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- fix 1 loop range in mom_vecinv.F to be like all the other loops which |
| 53 |
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set/update gu,gv/Diss (fix Pb of uninitialised fVerUkp in admom_vecinv |
| 54 |
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with non-lin free-surf). |
| 55 |
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o model/src: move k-loop outside of i/j-loops when (re-)computing R_low |
| 56 |
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in ini/update_masks_etc.F in order to avoid -O3 optimization problems with |
| 57 |
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some compilers (gfortran 4.6.0 on MacOS) |
| 58 |
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o momentum: |
| 59 |
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- separate fVer?(:,:,kUp) & fVer?(:,:,kDown) in argument list of MOM_FLUXFORM |
| 60 |
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& MOM_VECINV subroutines (to help TAF). This fixes Pb of uninitialised |
| 61 |
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fVer?(kUp) in admom_fluxform with non-lin free-surf or bottom control. |
| 62 |
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|
| 63 |
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checkpoint63k (2012/03/17) |
| 64 |
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o model/src: |
| 65 |
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- selectAddFluid (ALLOW_ADDFLUID): add missing term in horizontal momentum |
| 66 |
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flux-form (mom_fluxform.F) and vertical momentum (calc_gw.F) equations. |
| 67 |
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- SOLVE_DIAGONAL: switch default to use adjoinable & vectorized version |
| 68 |
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(#undef SOLVE_DIAGONAL_LOWMEMORY); update output of exp. front_relax.bvp. |
| 69 |
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o model/src: solve_*diagonal.F |
| 70 |
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- replace division with multiplication by inverse (similar to original version) |
| 71 |
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update output of AD exp. global_ocean.90x40x15. |
| 72 |
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- fix pkg/gmredi/gmredi_calc_psi_bvp.F & pkg/ggl90/ggl90_calc.F |
| 73 |
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to enable the use of the vectorized & differentiable solve_tridiagonal.F |
| 74 |
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- test exp. global_ocean.90x40x15/input_ad: switch to advection scheme 20 for |
| 75 |
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vertical advection (to get solve_tridiagonal tested in AD mode). |
| 76 |
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o pkg/seaice: ECCO-CLIVAR merge: |
| 77 |
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1. seaice AREA relaxation |
| 78 |
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* CPP option: SEAICE_ALLOW_AREA_RELAXATION |
| 79 |
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* runtime flag: SEAICE_tauAreaObsRelax |
| 80 |
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2. modified global mean cost imbalance code: CPP option |
| 81 |
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ALLOW_SSH_GLOBMEAN_COST_CONTRIBUTION |
| 82 |
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o another iteration on solve_*diagonal.F |
| 83 |
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Make choices independent of AUTODIFF |
| 84 |
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Default will be the adjoinable vectorized version. |
| 85 |
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Alternative choices are: |
| 86 |
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* non-adjoinable original version with low memory footprint: |
| 87 |
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#define SOLVE_DIAGONAL_LOWMEMORY |
| 88 |
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* still adjoinable but does not vectorize (k as inner-most loop): |
| 89 |
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#define SOLVE_DIAGONAL_KINNER (keeping SOLVE_DIAGONAL_LOWMEMORY undef) |
| 90 |
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o testreport |
| 91 |
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- add option to use a home made wrapper around "make" |
| 92 |
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- remove MITGCM_IEEE env. variable (no longer active) |
| 93 |
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o pkg/shelfice |
| 94 |
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- improve computation of friction velocity for velocity dependent |
| 95 |
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exchange coefficients: include velocities into SHELFICEBoundaryLayer |
| 96 |
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block to average velocities vertically |
| 97 |
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- add TAF store directives for SHI_ALLOW_GAMMAFRICT |
| 98 |
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o Modify diagonal solvers, now three versions (upon request): |
| 99 |
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#ifndef SOLVE_DIAGONAL_AUTODIFF |
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1. default version (dating back a while ago) |
| 101 |
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#else /* def SOLVE_DIAGONAL_AUTODIFF */ |
| 102 |
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# ifdef SOLVE_DIAGONAL_KINNER |
| 103 |
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2. adjoinable version with k-innermost loop (G. Forget) |
| 104 |
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# else |
| 105 |
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3. adjoinable vectorized version of 2. |
| 106 |
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# endif |
| 107 |
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#endif /* SOLVE_DIAGONAL_AUTODIFF */ |
| 108 |
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All flags are currently set within routines, but could/should be moved to CPP-options. |
| 109 |
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Array bounds for 1. are as before, for 2.,3. cover the entire domain |
| 110 |
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(could be changed for 1. too). |
| 111 |
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o verification/lab_sea (fwd): |
| 112 |
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- update the 4 fwd lab_sea test experiment: no longer SEAICE_GROWTH_LEGACY, |
| 113 |
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use 7 categories (except hb87), new solve4temp params (except salt_plume), |
| 114 |
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constant salinity (=4) or variable salinity (salt_plume) done through |
| 115 |
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SItracer. |
| 116 |
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o pkg/seaice: |
| 117 |
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- rename parameters: SIsalFrac to SEAICE_saltFrac & SIsal0 to SEAICE_salt0; |
| 118 |
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- remove old parameters ( SEAICE_freeze, SEAICEturbFluxFormula, SEAICE_gamma_t, |
| 119 |
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SEAICE_gamma_t_frz, SEAICE_availHeatTaper & SEAICE_availHeatFracFrz) |
| 120 |
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from SEAICE_PARMS.h ; still need to fix seaice_cost_sst.F (broken when |
| 121 |
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SEAICE_freeze got retired) but already better than previously with |
| 122 |
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SEAICE_freeze=123456.7 deg.C; |
| 123 |
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- move setting of facOpenGrow/Melt from SEAICE_INIT_FIXED to SEAICE_READPARMS |
| 124 |
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(safer multi-threaded setting); always set SEAICEuseEVP; |
| 125 |
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- setting of ocean-ice turb. flux coeff: moved from SEAICE_CHECK to |
| 126 |
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SEAICE_READPARMS & SEAICE_INIT_FIXED (this fixes wrong summary report); |
| 127 |
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stop if multiple specifications for the same coeff; make sure default |
| 128 |
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SEAICE_mcPheePiston is compatible with drF(1) & deltaT. |
| 129 |
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o pkg/obcs: |
| 130 |
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- allow to switch to upwind 1rst order advection scheme for the advective |
| 131 |
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flux computation at the open-boundary; disabled for adjoint built. |
| 132 |
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o pkg/ptracers: |
| 133 |
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- rename PTRACERS_RESTART.h -> PTRACERS_START.h |
| 134 |
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- rename ptracers_fields_blocking_exchanges.F -> ptracers_fields_blocking_exch.F |
| 135 |
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- add parameter to decide when to start a tracer; use internal flag to |
| 136 |
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know which tracer to step-forward; switch this internal flag at the top |
| 137 |
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of forward_step.F (new S/R PTRACERS_SWITCH_ONOFF); for now, not enabled |
| 138 |
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for adjoint built. |
| 139 |
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o pkg/seaice: |
| 140 |
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- add SEAICE_SIZE.h anywhere in the code where SEAICE.h is included ; |
| 141 |
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- move MULTDIM declaration and setting from SEAICE.h to SEAICE_SIZE.h ; |
| 142 |
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- keep experiment offline_exf_seaice truly single category (set MULTDIM=1). |
| 143 |
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o pkg/ecco: |
| 144 |
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- fix writing of output file DiagnosCost_ClimSalt/Theta |
| 145 |
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and DiagnosCost_DriftSalt/Theta (if multi-tiles per proc). |
| 146 |
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o pkg/seaice: |
| 147 |
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- add missing initialisation of COR_ICE array in dynsolver.F |
| 148 |
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- merging SEAICE_MULTICATEGORY define and undef cases. Now the same code is |
| 149 |
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compiled either way, and is tested in all exps (multidim was only tested |
| 150 |
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in lab_sea ad before). |
| 151 |
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- cosmetic change to prepare for future addition of ITD. no change to results. |
| 152 |
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no defaults change. |
| 153 |
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- added run time param SEAICE_multDim (7 for SEAICE_MULTICATEGORY, 1 otherwise). |
| 154 |
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- by lack of adequate verification experiments, I further used custom versions |
| 155 |
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of global_ocean.cs32x15 to test multicat or not, with pickup or not. All |
| 156 |
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should be correct. |
| 157 |
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- avoid recomputations in ad. |
| 158 |
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o array initialisation in adjoint mode: |
| 159 |
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1) pkg/mom_common/mom_calc_ke.F: |
| 160 |
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add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC): |
| 161 |
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The S/R which calls MOM_CALC_KE initialises KE but in some recomputation |
| 162 |
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part this initialisation is gone, resulting in Floating Point Exception |
| 163 |
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(caught by open64 compiler with debug option). |
| 164 |
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2) model/src/convective_weights.F |
| 165 |
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set output convectCount over the full array range (instead of doing |
| 166 |
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an update): this fix a similar issue when called within recomputation (adjoint) |
| 167 |
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which could by-pass the initialisation (normally done in the caller S/R). |
| 168 |
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o pkg/seaice: |
| 169 |
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- final version of turbulent flux params, as agreed at MIT ice meet: |
| 170 |
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SEAICE_mcPheePiston (default is ~ 0.000875) |
| 171 |
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SEAICE_mcPheeTaper (default is 0.) |
| 172 |
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SEAICE_frazilFrac (defualt is 1.) |
| 173 |
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SEAICE_mcPheeStepFunc (default is false) |
| 174 |
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- changes results at trunction error level |
| 175 |
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- ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo |
| 176 |
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o added pkg/frazil: |
| 177 |
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- see frazil_description.tex for details |
| 178 |
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- verification experiment is global_with_exf/input.yearly; changes output.yearly.txt |
| 179 |
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o pkg/shelfice/shelfice_thermodynamics.F |
| 180 |
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- fix exponents for velocity dependent exchange coefficients: change |
| 181 |
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from 2/3(=0) to 0.66666666666666667 |
| 182 |
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- move computation of velocity dependent exchange coefficients into |
| 183 |
|
separate loop, so that it applies to both thermodynamics |
| 184 |
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- move some divisions by constants out of loops |
| 185 |
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|
| 186 |
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checkpoint63j (2012/02/16) |
| 187 |
|
o pkg/seaice: |
| 188 |
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- overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc. |
| 189 |
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- SItracer: added run time params, and allow coupling to ocn salinity. |
| 190 |
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o pkg/seaice: remove (almost) all divisions by constants within loops |
| 191 |
|
in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d |
| 192 |
|
results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only |
| 193 |
|
those, caused by 1/QI -> recip_QI) -> update output.seaice.txt, |
| 194 |
|
output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt |
| 195 |
|
o pkg/seaice : |
| 196 |
|
- simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula |
| 197 |
|
= 1 or 2, using newly added run time parameter SEAICE_availHeatTaper. |
| 198 |
|
- fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148. |
| 199 |
|
- add permanent SItflux diag that corresponds to TFLUX but includes |
| 200 |
|
ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget. |
| 201 |
|
- allow activation/testing of a fix for suspected missing term in |
| 202 |
|
ocn-ice heat budget (to be confirmed). To test this, you want to |
| 203 |
|
undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param |
| 204 |
|
SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic. |
| 205 |
|
- no change in results, fwd or ad. |
| 206 |
|
o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below: |
| 207 |
|
- switch to variable freezing point. |
| 208 |
|
Results change : cg2d -> 1 digits; ad -> 3-6-6 digits. |
| 209 |
|
- bug fix : the sublimation term that was missing is now activated. |
| 210 |
|
Results change : cg2d -> 2 digits; ad -> 8-6-6 digits. |
| 211 |
|
- bug fix : flooding sign term for SIsal0.NE.0. |
| 212 |
|
Result change : cg2d -> 8 digits; ad -> 11-12-9 digits. |
| 213 |
|
o pkg/seaice: |
| 214 |
|
- unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT |
| 215 |
|
is now the default, and the old default constant freezing point is recovered |
| 216 |
|
with SEAICE_tempFrz0 = -1.96, |
| 217 |
|
SEAICE_dTempFrz_dS = 0., |
| 218 |
|
- retire SEAICE_freeze (= the old way of specifycing the constant freezing point) |
| 219 |
|
- remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there. |
| 220 |
|
- bug fix (thanks to M. Losch) : the sublimation term that was missing is now |
| 221 |
|
activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM. |
| 222 |
|
- bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211) |
| 223 |
|
was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail). |
| 224 |
|
- bug fix (thanks to O. Jahn) : area loss for melting got messed up in |
| 225 |
|
seaice_growth r149 for legacy branch (no results change). |
| 226 |
|
- introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code |
| 227 |
|
from I. Fenty). |
| 228 |
|
- results did not change except for global_ocean.cs32x15, mostly due to the |
| 229 |
|
switch to variable freezing point (see above item for detail). |
| 230 |
|
o pkg/thsice: |
| 231 |
|
- fix and simplify interface to salt_plume pkg ; diagnose directly amount of |
| 232 |
|
seawater freezing in thsice_calc_thickn (not used). |
| 233 |
o pkg/seaice: turbulent flux term specification via run time params. |
o pkg/seaice: turbulent flux term specification via run time params. |
| 234 |
- replace CPP switches with run time switches to facilitate testing |
- replace CPP switches with run time switches to facilitate testing |
| 235 |
- retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX, GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR |
- retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX, |
| 236 |
|
GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR |
| 237 |
- added runtime parameter : SEAICEturbFluxFormula |
- added runtime parameter : SEAICEturbFluxFormula |
| 238 |
- move Mcphee constants to SEAICE_PARAMS.h |
- move Mcphee constants to SEAICE_PARAMS.h |
| 239 |
- seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula; |
- seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula; |
| 240 |
SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply); remove |
SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply); |
| 241 |
seaice_summary call (moved to seaice_init_fixed) |
remove seaice_summary call (moved to seaice_init_fixed) |
| 242 |
- seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on |
- seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on |
| 243 |
SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms) |
SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms) |
| 244 |
- seaice_summary.F : add missing report of read turbulent flux term set up (and SITRACER). |
- seaice_summary.F : add missing report of read turbulent flux term set up |
| 245 |
- seaice_check.F : check range; inform and stop if retired CPPs are used (incl. SEAICE_AGE). |
and SITRACER. |
| 246 |
- seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without |
- seaice_check.F : check range; inform and stop if retired CPPs are used |
| 247 |
CPP switch, same computation as before for the different options. |
(incl. SEAICE_AGE). |
| 248 |
|
- seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without |
| 249 |
|
CPP switch, same computation as before for the different options. |
| 250 |
- change results at the truncation level. |
- change results at the truncation level. |
| 251 |
o pkg/seaice: |
o pkg/seaice: |
| 252 |
- remove un-used parameters LAD & MAX_TICE ; add new run-time parameters: |
- remove un-used parameters LAD & MAX_TICE ; add new run-time parameters: |
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