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revision 1.1599 by jmc, Wed Feb 15 22:13:48 2012 UTC revision 1.1692 by jmc, Tue Jul 17 22:55:19 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o model/src: CG2D_NSA
8      - clean-up:  stop if cg2dNormaliseRHS=T and AUTODIFF
9         and replace GLOBAL_SUM calls with GLOBAL_SUM_TILE.
10      - in test-exp that uses CG2D_NSA (bottom_ctrl & tutorial_tracer_adjsens),
11         change cg2d residual target to be expressed in Wunits (=> do not normalise
12         RHS ; this fix global_max Pb with TAF); update output.
13    o verification/tutorial_tracer_adjsens:
14       improve parameter consistency (and get rid of warnings):
15       - use deltaTFreeSurf=deltaTtracer (better with NonLin FreeSurf);
16       - switch Temp Adv Scheme from 81 to 80 (no limiter since theta < 0 is physical)
17       - use staggerTimeStep (for stability) in som81; use default rotation period.
18    o pkg/exch2:
19      - with empty facet: fix compact-format (W2_mapIO=1) definition (was previously
20        reset to 0 = 1 long line in X)
21    o pkg/mdsio:
22      - fix reading of dimensions from meta file for large-size domain
23    o model/src:
24      - fix saltIsActiveTr setting for IdealGas eosType (eosType is 6 character long);
25      - to refine CS-grid check, add logical flag "hasWetCSCorners": true if using
26        Cubed-Sphere Exch with CS-corners inside the domain;
27        make new S/R INI_GLOBAL_DOMAIN from code in ini_linear_phisurf.F to calculate
28        globalArea and to set hasWetCSCorners.
29      - add warning if usingCurvilinearGrid and momAdvection in flux-form (missing
30        metric terms); stop if hasWetCSCorners=T and momAdvection in flux-form.
31      - re-activate the stop if useCDscheme and hasWetCSCorners=T (previously if
32        useCDscheme and useCubedSphereExchange).
33    o pkg/seaice/seaice_growth.F :
34      - compute the SEAICE_DISABLE_HEATCONSFIX term accordingly
35        for the (.NOT.useRealFreshWaterFlux).OR.(nonlinFreeSurf.EQ.0)
36        when the previous code was not correct.
37      - in all cases diagnoze the boundary condition mismatch to SIaaflux
38      - in the case of useRealFreshWaterFlux.AND.(nonlinFreeSurf.GT.0) add
39        that term to QNET (essentially to set the melt/freeze water to 0degC).
40        when SEAICEheatConsFix is true, so that the ocean+ice budget heat is closed.
41    o verification/global_ocean.cs32x15/input.seaice :
42      - add SEAICEheatConsFix in data.seaice, ensuring closed ocean+ice heat budget.
43      - add diagnostics (commented out) for budget test using my matlab codes (gcmfaces).
44      - update results (output.seaice.txt) accordingly.
45    o verification/lab_sea/input/data.seaice :
46      - remove SEAICEheatConsFix, which is now be tested
47        in global_ocean.cs32x15. The presently coded fix
48        is only consistent with real fresh water + nlfs.
49      - update results (output.txt) accordingly.
50    o pkg/salt_plume: added diagnotic for salt tendency (oceSPtnd).
51    o AD_CONFIG.h file:
52      - in genmake2: remove "#undef ALLOW_ECCO_OPTIMIZATION" from AD_CONFIG.h;
53      - remove #include "AD_CONFIG.h" from all included OPTIONS files and
54        add it explicitly in each fortran src file where it is needed.
55        motivation: header file AD_CONFIG.h is generated/modified after "make depend"
56        thus introducing potentially wrong dependency; therefore, better to include
57        it only where it's really needed, and after any other included OPTIONS file
58        (less tempting to bring conditional includes according to ALLOW_ADJOINT_RUN
59        or ALLOW_TANGENTLINEAR_RUN).
60    
61    checkpoint63p (2012/07/06)
62    o pkg/autodiff:
63      - rename S/R INI_AUTODIFF to AUTODIFF_INIT_VARIA ;
64      - create new header file "AUTODIFF_PARAMS.h" for pkg/autodiff parameters
65        which are now read from new parameter file "data.autodiff" (inAdExact
66        previously in "data", use{KPP/GMRedi/SEAICE}inAdMode previously in data.pkg)
67      - add file "data.autodiff" in all verification/*/input_ad/ directories.
68      - add run-time parameter to turn On/Off SEAICEuseFREEDRIFT in adjoint/forward
69        mode (used in global_ocean.cs32x15.seaice_dynmix test exp.)
70    o verification/tutorial_tracer_adjsens/
71      - add extra sub-verification which uses "SOM" advection scheme
72        (2nd Order-Moment Advection Scheme, Prather Limiter) with
73          #define GAD_ALLOW_TS_SOM_ADV in GAD_OPTIONS.h
74        and in data:
75          multiDimAdvection=.TRUE.,
76          tempAdvScheme=81,
77          saltAdvScheme=81,
78    o model/src:
79      - introduce ALLOW_BALANCE_RELAX which allow the removal
80       of the global mean of relaxation terms by setting
81       balanceThetaClimRelax and balanceSaltClimRelax
82      - disable balanceEmPmR and balanceQnet in the case when useSeaice.
83       This case is now treated appropriately in seaice_growth.F
84    o pkg/seaice:
85      - do balanceEmPmR and balanceQnet based on the net fluxes
86        (SItflux) that enter the ocean+ice system rather than QNET
87        and EMPMR. Works best in real fresh water.
88      - SIatmFW, SIatmQnet, and SItflux computations had to be moved
89        out of the diagnotics bloc, and stored in global arrays.
90    
91    checkpoint63o (2012/06/29)
92    o vertical mixing schemes:
93      - remove unused S/R CALC_BUOYANCY (left from branch-atmos merging)
94      - replace computation of density (in Function STATE1, opps_calc.F) by a call
95        to S/R FIND_RHO_SCALAR
96      - pass sigmaR to S/R PP81_CALC, MY82_CALC (but not yet used) and to GGL90_CALC
97        and use it for N^2 calculation in ggl90_calc.F (save 2 density computations);
98        affects output (vermix.ggl90) at truncation level.
99    o testreport:
100      - change adjustment of SIZE.h for mpi+mth testing: preserve enough tiles
101        (nSx,nSy) for the number of threads (from eedata.mth)
102    o model/src:
103      - remove 2nd set of calls at the top of initialise_varia.F (Adjoint part)
104        related to Non_Lin Free-Surf or Bottom-Control (but not longer necessary).
105    o verification/tutorial_tracer_adjsens/
106      - compile with ALLOW_CG2D_NSA
107      - run with nonlinFreeSurf=3
108      - update reference output_adm.txt
109    o tools/genmake2:
110      - add "-DHAVE_NETCDF" to the DEFINES list when NetCDF is available ;
111        refine usePROFILES switching off (only when NetCDF is not available).
112    o verification (atmospheric set-up):
113      - change eosType='IDEALGAS' to eosType='IDEALG' to match variable declaration
114    o pkg/profiles : refine profiles and files handling.
115    o model/src and pkg/ecco : introduce run-time switch usePROFILES.
116    o model/src/the_main_loop.F, forward_step.F and pkg/exf/EXF_OPTIONS.h :
117      - changes to use model/src/the_main_loop.F rather than the ecco version
118        in ecco type adjoint runs.
119    o model/src:
120      - move computation of recip of grid distance & area from INI_MASKS_ETC to INI_GRID
121      - move setting of h0Fac[C,W,S] from INI_LINEAR_PHISURF to INI_MASKS_ETC
122      - update_masks_etc.F: rename SMOOTH*_R4,R8 function to the corresponding type (RS,RL)
123    o model/src:
124      - fix S/R UPDATE_CG2D for ALLOW_DEPTH_CONTROL case (was empty before);
125        update output of test experiment bottom_ctrl_5x5.
126    o pkg/generic_advdiff:
127      - implement vertical bi-harmonic diffusion (for now, only for T & S and
128        only explicitly).
129    o verification/bottom_ctrl_5x5/
130      update reference output (results changed quite some time ago,
131      not sure when; but new reference results look ok in terms of grdchk)
132    o verification/1D_ocean_ice_column/
133      For verification purposes, the exact adjoint rather than an approx.
134      should be used (e.g., to comare against F.D. or TLM).
135      removed autodiff_inadmode*_ad.F routines in code_ad/
136      Update results/ accordingly.
137    o pkg/cal:
138      - change cal_getdate.F so that output date is function of input time only
139        (less ambiguous, not mixed up with input iteration number).
140      - fix calendarDumps for non-zero phase-lag (S/R CAL_TIME2DUMP).
141    o pkg/diagnostics:
142      - implement calendarDumps also for stats-diags
143      - implement calendarDumps also for snap-shot output (negative freq)
144      - for now, ignores calendarDumps if non-zero phase-lag.
145    
146    checkpoint63n (2012/06/04)
147    o model/src:
148      - recompute rSurfW & S to ensure consistent column thickness (needed for rStar)
149        between Sum_k(hFac*drF) and rSurf-rLow, for now only when using pkg/shelfice;
150      - use h0FacC, W & S to compute hFac_surfC, W & S in calc_surf_dr.F (more
151        similar to calc_r_star.F); update results of experiment internal_wave and
152        tutorial_global_oce_in_p (affected @ truncation level).
153    o pkg/shelfice:
154      - add parameterisation of advective-diffusive flux into the ice shelf
155        according to Holland and Jenkins (1999), eq.22-33, as suggested by Jan De Ryd
156      - simply eps3/3a computation
157    o eesupp:
158     - add new CPP option (DISCONNECTED_TILES) to disconnect tiles (no exchange
159       between tiles, just fill-in edges assuming locally periodic subdomain) and
160       add corresponding exchange subroutines (EXCH0);
161     - new CG-solver version (_EX0) for disconnected-tiles special case.
162    o model/src (CG-solvers):
163     - modify Single-Reduction version (CG2D_SR) in case cg2dMaxIters is reached
164       (similar final residual output and max-Iter number as with standard version);
165     - allows to store and use lowest-residual solution (standard & _SR versions);
166     - cleaning up (remove old, commented out code, LETS_MAKE_JAM ...).
167     - by default, also compile CG2D_SR version (define ALLOW_SRCG in CPP_OPTIONS.h)
168    o eesup/src:
169     - global_vec_sum.F cleaning: add a BARRIER ; update comments ; remove ndef
170       ALWAYS_USE_MPI (no longer needed after fixing usingMPI settings - March 2012)
171    o pkg/salt_plume added to lab_sea/input_ad.noseaicedyn
172    
173    checkpoint63m (2012/04/27)
174    o pkg/shelfice:
175     - account for partical cells in surface level below ice-shelf for hydrostatic
176       pressure calculion (set uniformFreeSurfLev to F); update isomip experiments.
177    o ad test experiments:
178     - update and rename to "ad_optfile.local" local AD-optfile specific to a
179       particular adjoint verification experiment (in verification/*/code_ad/)
180    o pkg/seaice & pkg/exf:
181     - Part two of ECCO-CLIVAR code merges.
182       Completes merge of seaice area relax. code.
183       Requires unified CPP option EXF_ALLOW_SEAICE_RELAX
184       to be set in EXF_OPTIONS.h since this pkg controls its I/O
185       (and avoids second CPP option in SEAICE_OPTIONS.h)
186     - change default value of costIceStart & costIceEnd to a valid date.
187     - add snowPrecip to HSNOW in seaice_growth
188    o pkg/ptracers:
189     - move ptracers summary and setup check into separated S/R ; add a check for
190       valid PTRACERS_Iter0 value (error+stop or just warning).
191    o pkg/cal (+ pkg/ecco):
192     - avoid calling a S/R with 2 times the same arg (FWD: unless both are only used
193       as input; and for AD, unless both are not differentiable (e.g., k index)).
194    o model/src:
195     - define internal flag "uniformFreeSurfLev" (=T when free-surface level-index
196       is everywhere k=1) to speed-up some calculations (by pass kSurf reference);
197       temporary set to usingZCoords value (to be changed to F when using shelfice).
198     - hydrostatic pressure: implement partial cell near the surface also for
199       Z-coordinates (for the case where uniformFreeSurfLev=F); replace test on
200       usingZCoords with test on uniformFreeSurfLev where needed (in NonHyd code).
201    o pkg/ctrl/ctrl_init.F:
202     - add a formal parameter to s/r ctrl_init_rec to print
203       xx_$(ctrl_valiable)_file for easier debugging
204     - move call of cal_* routines into the if-block where they are really
205       needed so that xx_$(ctrl_variable)_period can be 0 or -12 without having
206       to specify a startdate
207    o pkg/seaice:
208     - update comments in SEAICE_OPTIONS.h (+ similar update of lab_sea/code and
209       global_ocean.cs32x15/code versions).
210     - turn on seaice Multi-category (in data.seaice, SEAICE_multDim=7) for
211       verification experiment global_ocean.cs32x15.seaice and update results.
212    o pkg/exf:
213     - new S/R EXF_GETFIELD_START to return starting-time of a forcing field
214       (according to useExfYearlyFields).
215    o pkg/cal:
216     - move calendar setting & summary (previously in cal_readparams.F) into new
217       S/R CAL_INIT_FIXED to be called later in the initialisation process, once
218       length of the simulation is set (after SET_PARMS call); This is an attempt
219       to fix Pb when, e.g.: pkg/longstep, modifies the length of the run.
220     - For safety: keep a record of pkg/cal parameter settings status
221               to allow to STOP if one pkg/cal S/R is called too early.
222     - add a stop in all basic pkg/cal subroutines if called before setting is done.
223     - modify cal_getdate.F: stop when nothing was returned;
224       if called with myIter=-1, simply retrun modelBaseDate (1,2 = startDate_1,_2);
225       this allows to remove "cal.h" from seaice_read_parms.F & init_mnc_vars.F.
226    
227    checkpoint63l (2012/04/04)
228    o pkg/bbl:
229      - fix call to FIND_RHO_2D in bbl_calc_rho.F (case multi-tiles per proc);
230        update global_with_exf output.yearly.txt file.
231    o pkg/cal:
232      - start to clean-up cal_set.F ; fix for the case where baseTime is non-zero.
233      - remove 2 unsused and very short (1 line only) functions ;
234      - remove unsused subroutines from AD-Diff list.
235    o model/src:
236      - start to implement clean wait to stop in initialization S/R (config_check.F,
237         packages_check.F, ini_parms.F and pkg/obcs/obcs_check.F + pkg/mypackage)
238    o folowing PRINT_MESSAGE changes:
239      - remove reminder multiple print to the same file (STDOUT) when multi-threads.
240    o pkg/bbl:
241      - modification so it can work with z*
242      - replace deltaT with dTtracerLev(k) for asynchronous time stepping
243      - global_with_exf/input.yearly verification; changes output.yearly.txt
244    o eesupp/src:
245      - PRINT_MESSAGE: use OpenMP critical instruction (similar to PRINT_ERROR);
246        writing to unit 0 (if unit=errorMessageUnit) extended to the case myThid=1
247      - CHECK_THREADS: specific code if using OpenMP threading: improve checking of
248        # of threads across processors (e.g., different env OMP_NUM_THREADS setting)
249      - improve special preliminary call to EESET_PARMS (if eedata is read 2 times).
250      - when using MPI, always set usingMPI=T ; set default accordingly and stop
251        if not consistent.
252      - ALL_PROC_DIE: add a BARRIER after MPI_FINALIZE call ; skip this when thread
253        argument is zero (in case called within single-thread section).
254    o pkg/fizhi:
255        clean-up turbulence cold-start switch: decided in fizhi_init_vars.F, stored
256        in common bloc (fizhi_coms.h) and then passed as argument up to S/R TURBIO.
257    o pkg/exch2:
258      - add argument "updateCorners" to S/R exch2_get_uv_bounds (enable to
259        activate EXCH_IGNORE_CORNERS in vector EXCH S/R).
260      - switch 1rst EXCH call to IGNORE_CORNERS (instead of UPDATE_CORNERS)
261        but keep the 2nd with UPDATE_CORNERS: this prevents overwriting good data
262        with bad ones coming from a not-yet-updated halo.
263        This should fix the problem when sNx <> sNy and GCD(sNx,sNy) < 2*Olx.
264    o pkg/frazil:
265        move FrzForcT diag from frazil_diagnostics_state.F to frazil_calc_rhs.F
266        http://mitgcm.org/pipermail/mitgcm-devel/2012-March/005384.html
267    o model/src/config_check.F: add a check for OLx>sNx/OLy>sNy
268    o verification/lab_sea
269      * #undef SEAICE_EXCLUDE_FOR_EXACT_AD_TESTING
270      * #define ALLOW_SST_CONTROL & ALLOW_SST_CONTROL
271      * nTimeSteps 3 -> 4
272      * changed reference output accordingly
273    o pkg/ctrl:
274      * fix ctrl_get_gen for xx_sst, xx_sss
275    o pkg/fizhi:
276      - fix 2 calls to S/R GRD2MSC (argument igrd) in update_earth_exports.F
277        update results of exp. fizhi-cs-32x32x40 (fail with only 6 digits for cg2d)
278      - by default, use new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE);
279        fix few out-of-bounds indices in referencing vars (initialise igrd to 1);
280        clean-up fizhi_turb.F (remove unused & uninitialised qdiaglsm array).
281    o pkg/gmredi:
282      - add diagnostic of Redi (main diagnonal) vertical diffusive flux of Temp
283    o pkg/fizhi:
284      - fix few initialisation and multi-tile Pb: aqualev & gridalt now pass the
285        (old)aces open64 tuv test.
286    o pkg/icefront: fix bug and reorder loop in icefront_init_varia.F
287    o pkg/mom_vecinv:
288      - fix 1 loop range in mom_vecinv.F to be like all the other loops which
289        set/update gu,gv/Diss (fix Pb of uninitialised fVerUkp in admom_vecinv
290        with non-lin free-surf).
291    o model/src: move k-loop outside of i/j-loops when (re-)computing R_low
292      in ini/update_masks_etc.F in order to avoid -O3 optimization problems with
293      some compilers (gfortran 4.6.0 on MacOS)
294    o momentum:
295      - separate fVer?(:,:,kUp) & fVer?(:,:,kDown) in argument list of MOM_FLUXFORM
296        & MOM_VECINV subroutines (to help TAF). This fixes Pb of uninitialised
297        fVer?(kUp) in admom_fluxform with non-lin free-surf or bottom control.
298    
299    checkpoint63k (2012/03/17)
300    o model/src:
301       - selectAddFluid (ALLOW_ADDFLUID): add missing term in horizontal momentum
302         flux-form (mom_fluxform.F) and vertical momentum (calc_gw.F) equations.
303       - SOLVE_DIAGONAL: switch default to use adjoinable & vectorized version
304         (#undef SOLVE_DIAGONAL_LOWMEMORY); update output of exp. front_relax.bvp.
305    o model/src: solve_*diagonal.F
306       - replace division with multiplication by inverse (similar to original version)
307         update output of AD exp. global_ocean.90x40x15.
308       - fix pkg/gmredi/gmredi_calc_psi_bvp.F & pkg/ggl90/ggl90_calc.F
309         to enable the use of the vectorized & differentiable solve_tridiagonal.F
310       - test exp. global_ocean.90x40x15/input_ad: switch to advection scheme 20 for
311         vertical advection (to get solve_tridiagonal tested in AD mode).
312    o pkg/seaice: ECCO-CLIVAR merge:
313      1. seaice AREA relaxation
314         * CPP option: SEAICE_ALLOW_AREA_RELAXATION
315         * runtime flag: SEAICE_tauAreaObsRelax
316      2. modified global mean cost imbalance code: CPP option
317          ALLOW_SSH_GLOBMEAN_COST_CONTRIBUTION
318    o another iteration on solve_*diagonal.F
319       Make choices independent of AUTODIFF
320       Default will be the adjoinable vectorized version.
321       Alternative choices are:
322       * non-adjoinable original version with low memory footprint:
323         #define SOLVE_DIAGONAL_LOWMEMORY
324       * still adjoinable but does not vectorize (k as inner-most loop):
325         #define SOLVE_DIAGONAL_KINNER (keeping SOLVE_DIAGONAL_LOWMEMORY undef)
326    o testreport
327     - add option to use a home made wrapper around "make"
328     - remove MITGCM_IEEE env. variable (no longer active)
329    o pkg/shelfice
330     - improve computation of friction velocity for velocity dependent
331       exchange coefficients: include velocities into SHELFICEBoundaryLayer
332       block to average velocities vertically
333     - add TAF store directives for SHI_ALLOW_GAMMAFRICT
334    o Modify diagonal solvers, now three versions (upon request):
335      #ifndef SOLVE_DIAGONAL_AUTODIFF
336        1. default version (dating back a while ago)
337      #else /* def SOLVE_DIAGONAL_AUTODIFF */
338      # ifdef SOLVE_DIAGONAL_KINNER
339        2. adjoinable version with k-innermost loop (G. Forget)
340      # else
341        3. adjoinable vectorized version of 2.
342      # endif
343      #endif /* SOLVE_DIAGONAL_AUTODIFF */
344      All flags are currently set within routines, but could/should be moved to CPP-options.
345      Array bounds for 1. are as before, for 2.,3. cover the entire domain
346      (could be changed for 1. too).
347    o verification/lab_sea (fwd):
348      - update the 4 fwd lab_sea test experiment: no longer SEAICE_GROWTH_LEGACY,
349        use 7 categories (except hb87), new solve4temp params (except salt_plume),
350        constant salinity (=4) or variable salinity (salt_plume) done through
351        SItracer.
352    o pkg/seaice:
353      - rename parameters: SIsalFrac to SEAICE_saltFrac & SIsal0 to SEAICE_salt0;
354      - remove old parameters ( SEAICE_freeze, SEAICEturbFluxFormula, SEAICE_gamma_t,
355         SEAICE_gamma_t_frz, SEAICE_availHeatTaper & SEAICE_availHeatFracFrz)
356        from SEAICE_PARMS.h ; still need to fix seaice_cost_sst.F (broken when
357        SEAICE_freeze got retired) but already better than previously with
358        SEAICE_freeze=123456.7 deg.C;
359      - move setting of facOpenGrow/Melt from SEAICE_INIT_FIXED to SEAICE_READPARMS
360        (safer multi-threaded setting); always set SEAICEuseEVP;
361      - setting of ocean-ice turb. flux coeff: moved from SEAICE_CHECK to
362        SEAICE_READPARMS & SEAICE_INIT_FIXED (this fixes wrong summary report);
363        stop if multiple specifications for the same coeff; make sure default
364        SEAICE_mcPheePiston is compatible with drF(1) & deltaT.
365    o pkg/obcs:
366      - allow to switch to upwind 1rst order advection scheme for the advective
367        flux computation at the open-boundary; disabled for adjoint built.
368    o pkg/ptracers:
369      - rename PTRACERS_RESTART.h -> PTRACERS_START.h
370      - rename ptracers_fields_blocking_exchanges.F -> ptracers_fields_blocking_exch.F
371      - add parameter to decide when to start a tracer; use internal flag to
372        know which tracer to step-forward; switch this internal flag at the top
373        of forward_step.F (new S/R PTRACERS_SWITCH_ONOFF); for now, not enabled
374        for adjoint built.
375    o pkg/seaice:
376      - add SEAICE_SIZE.h anywhere in the code where SEAICE.h is included ;
377      - move MULTDIM declaration and setting from SEAICE.h to SEAICE_SIZE.h ;
378      - keep experiment offline_exf_seaice truly single category (set MULTDIM=1).
379    o pkg/ecco:
380      - fix writing of output file DiagnosCost_ClimSalt/Theta
381        and DiagnosCost_DriftSalt/Theta (if multi-tiles per proc).
382    o pkg/seaice:
383      - add missing initialisation of COR_ICE array in dynsolver.F
384      - merging SEAICE_MULTICATEGORY define and undef cases. Now the same code is
385        compiled either way, and is tested in all exps (multidim was only tested
386        in lab_sea ad before).
387      - cosmetic change to prepare for future addition of ITD. no change to results.
388        no defaults change.
389      - added run time param SEAICE_multDim (7 for SEAICE_MULTICATEGORY, 1 otherwise).
390      - by lack of adequate verification experiments, I further used custom versions
391        of global_ocean.cs32x15 to test multicat or not, with pickup or not. All
392        should be correct.
393      - avoid recomputations in ad.
394    o array initialisation in adjoint mode:
395      1) pkg/mom_common/mom_calc_ke.F:
396        add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC):
397        The S/R which calls MOM_CALC_KE initialises KE but in some recomputation
398        part this initialisation is gone, resulting in Floating Point Exception
399        (caught by open64 compiler with debug option).
400      2) model/src/convective_weights.F
401        set output convectCount over the full array range (instead of doing
402        an update): this fix a similar issue when called within recomputation (adjoint)
403        which could by-pass the initialisation (normally done in the caller S/R).
404    o pkg/seaice:
405      - final version of turbulent flux params, as agreed at MIT ice meet:
406           SEAICE_mcPheePiston (default is ~ 0.000875)
407           SEAICE_mcPheeTaper (default is 0.)
408           SEAICE_frazilFrac (defualt is 1.)
409           SEAICE_mcPheeStepFunc (default is false)
410      - changes results at trunction error level
411      - ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo
412    o added pkg/frazil:
413      - see frazil_description.tex for details
414      - verification experiment is global_with_exf/input.yearly; changes output.yearly.txt
415    o pkg/shelfice/shelfice_thermodynamics.F
416      - fix exponents for velocity dependent exchange coefficients: change
417        from 2/3(=0) to 0.66666666666666667
418      - move computation of velocity dependent exchange coefficients into
419        separate loop, so that it applies to both thermodynamics
420      - move some divisions by constants out of loops
421    
422    checkpoint63j (2012/02/16)
423    o pkg/seaice:
424      - overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc.
425      - SItracer:  added run time params, and allow coupling to ocn salinity.
426  o pkg/seaice: remove (almost) all divisions by constants within loops  o pkg/seaice: remove (almost) all divisions by constants within loops
427    in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d    in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d
428    results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only    results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only
429    those, caused by 1/QI -> recip_QI) -> update output.seaice.txt,    those, caused by 1/QI -> recip_QI) -> update output.seaice.txt,
430    output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt    output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt
431  o pkg/seaice :  o pkg/seaice :
432    - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula.EQ.    - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula
433    1 or 2, using newly added run time parameter SEAICE_availHeatTaper.      = 1 or 2, using newly added run time parameter SEAICE_availHeatTaper.
434    - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.    - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.
435    - add permanent SItflux diag that corresponds to TFLUX but includes    - add permanent SItflux diag that corresponds to TFLUX but includes
436    ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.      ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.
437    - allow activation/testing of a fix for suspected missing term in    - allow activation/testing of a fix for suspected missing term in
438    ocn-ice heat budget (to be confirmed). To test this, you want to      ocn-ice heat budget (to be confirmed). To test this, you want to
439    undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param      undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param
440    SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.      SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.
441    - no change in results, fwd or ad.    - no change in results, fwd or ad.
442  o global_ocean.cs32x15/results: three changes following from the pkg/seaice commit below.  o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below:
443    - switch to variable freezing point.    - switch to variable freezing point.
444         Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.         Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.
445    - bug fix : the sublimation term that was missing is now activated.    - bug fix : the sublimation term that was missing is now activated.
# Line 29  o global_ocean.cs32x15/results: three ch Line 448  o global_ocean.cs32x15/results: three ch
448         Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.         Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.
449  o pkg/seaice:  o pkg/seaice:
450    - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT    - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT
451   is now the default, and the old default constant freezing point is recovered with      is now the default, and the old default constant freezing point is recovered
452   SEAICE_tempFrz0    = -1.96,      with SEAICE_tempFrz0    = -1.96,
453   SEAICE_dTempFrz_dS = 0.,           SEAICE_dTempFrz_dS = 0.,
454    - retire SEAICE_freeze that was the old way of specifycing the constant freezing point.    - retire SEAICE_freeze (= the old way of specifycing the constant freezing point)
455    - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.    - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.
456    - bug fix (thanks to M. Losch) : the sublimation term that was missing is now    - bug fix (thanks to M. Losch) : the sublimation term that was missing is now
457   activated. To reproduce old results that had this bug define SEAICE_DISABLE_SUBLIM.      activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM.
458    - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)    - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)
459   was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).      was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).
460    - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in    - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in
461   seaice_growth r149 for legacy branch (no results change).      seaice_growth r149 for legacy branch (no results change).
462    - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code from I. Fenty).    - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code
463    - results did not change except for global_ocean.cs32x15, mostly due to the switch      from I. Fenty).
464    to variable freezing point (see above item for detail).    - results did not change except for global_ocean.cs32x15, mostly due to the
465        switch to variable freezing point (see above item for detail).
466  o pkg/thsice:  o pkg/thsice:
467    - fix and simplify interface to salt_plume pkg ; diagnose directly amount of    - fix and simplify interface to salt_plume pkg ; diagnose directly amount of
468      seawater freezing in thsice_calc_thickn (not used).      seawater freezing in thsice_calc_thickn (not used).
469  o pkg/seaice: turbulent flux term specification via run time params.  o pkg/seaice: turbulent flux term specification via run time params.
470    - replace CPP switches with run time switches to facilitate testing    - replace CPP switches with run time switches to facilitate testing
471    - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX, GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR    - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX,
472                       GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR
473    - added runtime parameter : SEAICEturbFluxFormula    - added runtime parameter : SEAICEturbFluxFormula
474    - move Mcphee constants to SEAICE_PARAMS.h    - move Mcphee constants to SEAICE_PARAMS.h
475    - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;    - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;
476      SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply); remove               SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply);
477      seaice_summary call (moved to seaice_init_fixed)               remove seaice_summary call (moved to seaice_init_fixed)
478    - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on    - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on
479      SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)      SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)
480    - seaice_summary.F : add missing report of read turbulent flux term set up (and SITRACER).    - seaice_summary.F : add missing report of read turbulent flux term set up
481    - seaice_check.F : check range; inform and stop if retired CPPs are used (incl. SEAICE_AGE).                         and SITRACER.
482      - seaice_check.F : check range; inform and stop if retired CPPs are used
483                         (incl. SEAICE_AGE).
484    - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without    - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without
485          CPP switch, same computation as before for the different options.           CPP switch, same computation as before for the different options.
486    - change results at the truncation level.    - change results at the truncation level.
487  o pkg/seaice:  o pkg/seaice:
488    - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:    - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:
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