/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.1522 by mlosch, Wed Oct 26 09:30:32 2011 UTC revision 1.1625 by jmc, Sat Mar 17 14:58:45 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint63k (2012/03/17)
8    o model/src:
9       - selectAddFluid (ALLOW_ADDFLUID): add missing term in horizontal momentum
10         flux-form (mom_fluxform.F) and vertical momentum (calc_gw.F) equations.
11       - SOLVE_DIAGONAL: switch default to use adjoinable & vectorized version
12         (#undef SOLVE_DIAGONAL_LOWMEMORY); update output of exp. front_relax.bvp.
13    o model/src: solve_*diagonal.F
14       - replace division with multiplication by inverse (similar to original version)
15         update output of AD exp. global_ocean.90x40x15.
16       - fix pkg/gmredi/gmredi_calc_psi_bvp.F & pkg/ggl90/ggl90_calc.F
17         to enable the use of the vectorized & differentiable solve_tridiagonal.F
18       - test exp. global_ocean.90x40x15/input_ad: switch to advection scheme 20 for
19         vertical advection (to get solve_tridiagonal tested in AD mode).
20    o pkg/seaice: ECCO-CLIVAR merge:
21      1. seaice AREA relaxation
22         * CPP option: SEAICE_ALLOW_AREA_RELAXATION
23         * runtime flag: SEAICE_tauAreaObsRelax
24      2. modified global mean cost imbalance code: CPP option
25          ALLOW_SSH_GLOBMEAN_COST_CONTRIBUTION
26    o another iteration on solve_*diagonal.F
27       Make choices independent of AUTODIFF
28       Default will be the adjoinable vectorized version.
29       Alternative choices are:
30       * non-adjoinable original version with low memory footprint:
31         #define SOLVE_DIAGONAL_LOWMEMORY
32       * still adjoinable but does not vectorize (k as inner-most loop):
33         #define SOLVE_DIAGONAL_KINNER (keeping SOLVE_DIAGONAL_LOWMEMORY undef)
34    o testreport
35     - add option to use a home made wrapper around "make"
36     - remove MITGCM_IEEE env. variable (no longer active)
37    o pkg/shelfice
38     - improve computation of friction velocity for velocity dependent
39       exchange coefficients: include velocities into SHELFICEBoundaryLayer
40       block to average velocities vertically
41     - add TAF store directives for SHI_ALLOW_GAMMAFRICT
42    o Modify diagonal solvers, now three versions (upon request):
43      #ifndef SOLVE_DIAGONAL_AUTODIFF
44        1. default version (dating back a while ago)
45      #else /* def SOLVE_DIAGONAL_AUTODIFF */
46      # ifdef SOLVE_DIAGONAL_KINNER
47        2. adjoinable version with k-innermost loop (G. Forget)
48      # else
49        3. adjoinable vectorized version of 2.
50      # endif
51      #endif /* SOLVE_DIAGONAL_AUTODIFF */
52      All flags are currently set within routines, but could/should be moved to CPP-options.
53      Array bounds for 1. are as before, for 2.,3. cover the entire domain
54      (could be changed for 1. too).
55    o verification/lab_sea (fwd):
56      - update the 4 fwd lab_sea test experiment: no longer SEAICE_GROWTH_LEGACY,
57        use 7 categories (except hb87), new solve4temp params (except salt_plume),
58        constant salinity (=4) or variable salinity (salt_plume) done through
59        SItracer.
60    o pkg/seaice:
61      - rename parameters: SIsalFrac to SEAICE_saltFrac & SIsal0 to SEAICE_salt0;
62      - remove old parameters ( SEAICE_freeze, SEAICEturbFluxFormula, SEAICE_gamma_t,
63         SEAICE_gamma_t_frz, SEAICE_availHeatTaper & SEAICE_availHeatFracFrz)
64        from SEAICE_PARMS.h ; still need to fix seaice_cost_sst.F (broken when
65        SEAICE_freeze got retired) but already better than previously with
66        SEAICE_freeze=123456.7 deg.C;
67      - move setting of facOpenGrow/Melt from SEAICE_INIT_FIXED to SEAICE_READPARMS
68        (safer multi-threaded setting); always set SEAICEuseEVP;
69      - setting of ocean-ice turb. flux coeff: moved from SEAICE_CHECK to
70        SEAICE_READPARMS & SEAICE_INIT_FIXED (this fixes wrong summary report);
71        stop if multiple specifications for the same coeff; make sure default
72        SEAICE_mcPheePiston is compatible with drF(1) & deltaT.
73    o pkg/obcs:
74      - allow to switch to upwind 1rst order advection scheme for the advective
75        flux computation at the open-boundary; disabled for adjoint built.
76    o pkg/ptracers:
77      - rename PTRACERS_RESTART.h -> PTRACERS_START.h
78      - rename ptracers_fields_blocking_exchanges.F -> ptracers_fields_blocking_exch.F
79      - add parameter to decide when to start a tracer; use internal flag to
80        know which tracer to step-forward; switch this internal flag at the top
81        of forward_step.F (new S/R PTRACERS_SWITCH_ONOFF); for now, not enabled
82        for adjoint built.
83    o pkg/seaice:
84      - add SEAICE_SIZE.h anywhere in the code where SEAICE.h is included ;
85      - move MULTDIM declaration and setting from SEAICE.h to SEAICE_SIZE.h ;
86      - keep experiment offline_exf_seaice truly single category (set MULTDIM=1).
87    o pkg/ecco:
88      - fix writing of output file DiagnosCost_ClimSalt/Theta
89        and DiagnosCost_DriftSalt/Theta (if multi-tiles per proc).
90    o pkg/seaice:
91      - add missing initialisation of COR_ICE array in dynsolver.F
92      - merging SEAICE_MULTICATEGORY define and undef cases. Now the same code is
93        compiled either way, and is tested in all exps (multidim was only tested
94        in lab_sea ad before).
95      - cosmetic change to prepare for future addition of ITD. no change to results.
96        no defaults change.
97      - added run time param SEAICE_multDim (7 for SEAICE_MULTICATEGORY, 1 otherwise).
98      - by lack of adequate verification experiments, I further used custom versions
99        of global_ocean.cs32x15 to test multicat or not, with pickup or not. All
100        should be correct.
101      - avoid recomputations in ad.
102    o array initialisation in adjoint mode:
103      1) pkg/mom_common/mom_calc_ke.F:
104        add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC):
105        The S/R which calls MOM_CALC_KE initialises KE but in some recomputation
106        part this initialisation is gone, resulting in Floating Point Exception
107        (caught by open64 compiler with debug option).
108      2) model/src/convective_weights.F
109        set output convectCount over the full array range (instead of doing
110        an update): this fix a similar issue when called within recomputation (adjoint)
111        which could by-pass the initialisation (normally done in the caller S/R).
112    o pkg/seaice:
113      - final version of turbulent flux params, as agreed at MIT ice meet:
114           SEAICE_mcPheePiston (default is ~ 0.000875)
115           SEAICE_mcPheeTaper (default is 0.)
116           SEAICE_frazilFrac (defualt is 1.)
117           SEAICE_mcPheeStepFunc (default is false)
118      - changes results at trunction error level
119      - ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo
120    o added pkg/frazil:
121      - see frazil_description.tex for details
122      - verification experiment is global_with_exf/input.yearly; changes output.yearly.txt
123    o pkg/shelfice/shelfice_thermodynamics.F
124      - fix exponents for velocity dependent exchange coefficients: change
125        from 2/3(=0) to 0.66666666666666667
126      - move computation of velocity dependent exchange coefficients into
127        separate loop, so that it applies to both thermodynamics
128      - move some divisions by constants out of loops
129    
130    checkpoint63j (2012/02/16)
131    o pkg/seaice:
132      - overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc.
133      - SItracer:  added run time params, and allow coupling to ocn salinity.
134    o pkg/seaice: remove (almost) all divisions by constants within loops
135      in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d
136      results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only
137      those, caused by 1/QI -> recip_QI) -> update output.seaice.txt,
138      output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt
139    o pkg/seaice :
140      - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula
141        = 1 or 2, using newly added run time parameter SEAICE_availHeatTaper.
142      - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.
143      - add permanent SItflux diag that corresponds to TFLUX but includes
144        ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.
145      - allow activation/testing of a fix for suspected missing term in
146        ocn-ice heat budget (to be confirmed). To test this, you want to
147        undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param
148        SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.
149      - no change in results, fwd or ad.
150    o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below:
151      - switch to variable freezing point.
152           Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.
153      - bug fix : the sublimation term that was missing is now activated.
154           Results change : cg2d -> 2 digits; ad -> 8-6-6 digits.
155      - bug fix : flooding sign term for SIsal0.NE.0.
156           Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.
157    o pkg/seaice:
158      - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT
159        is now the default, and the old default constant freezing point is recovered
160        with SEAICE_tempFrz0    = -1.96,
161             SEAICE_dTempFrz_dS = 0.,
162      - retire SEAICE_freeze (= the old way of specifycing the constant freezing point)
163      - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.
164      - bug fix (thanks to M. Losch) : the sublimation term that was missing is now
165        activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM.
166      - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)
167        was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).
168      - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in
169        seaice_growth r149 for legacy branch (no results change).
170      - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code
171        from I. Fenty).
172      - results did not change except for global_ocean.cs32x15, mostly due to the
173        switch to variable freezing point (see above item for detail).
174    o pkg/thsice:
175      - fix and simplify interface to salt_plume pkg ; diagnose directly amount of
176        seawater freezing in thsice_calc_thickn (not used).
177    o pkg/seaice: turbulent flux term specification via run time params.
178      - replace CPP switches with run time switches to facilitate testing
179      - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX,
180                       GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR
181      - added runtime parameter : SEAICEturbFluxFormula
182      - move Mcphee constants to SEAICE_PARAMS.h
183      - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;
184                 SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply);
185                 remove seaice_summary call (moved to seaice_init_fixed)
186      - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on
187        SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)
188      - seaice_summary.F : add missing report of read turbulent flux term set up
189                           and SITRACER.
190      - seaice_check.F : check range; inform and stop if retired CPPs are used
191                         (incl. SEAICE_AGE).
192      - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without
193             CPP switch, same computation as before for the different options.
194      - change results at the truncation level.
195    o pkg/seaice:
196      - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:
197        useMaykutSatVapPoly (default=F), postSolvTempIter (default=2) and
198        SEAICE_wetAlbTemp (default=-1e-3). Remove option SEAICE_SOLVE4TEMP_LEGACY.
199      - update verification/*/input*/data.seaice:
200        to reproduce previous results with former #defined SEAICE_SOLVE4TEMP_LEGACY
201        code, set useMaykutSatVapPoly=T & postSolvTempIter=0 ;
202        and to reproduce previous results with former non-SOLVE4TEMP_LEGACY code,
203        set SEAICE_wetAlbTemp=0 & SEAICE_snowThick=0.
204    o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY):
205      - remove LEGACY code for solving for tsurf (A1,A2,A3) but maintain the same
206        algorithm (same choice: useMaykutPolySatVap=T, postSolvTempIter=0);
207        difference in results only due to machine truncation.
208      - remove MAX_TICE (tsurf is always =< TMELT anyway); keep MIN_TICE if using
209        MaykutPolySatVap; keep MIN_LWDOWN.
210      - adapt SEAICE_MODIFY_GROWTH_ADJ code (untested) to non-legacy formulation.
211      - update output of verification exp. lab_sea (4 fwd: 11 cg2d digits except hb87,
212        + 3 AD: 6 digits except evp) and offline_exf_seaice.seaice (12 digits).
213    o pkg/salt_plume:
214      - isolate saltPlumeFlux array exch into a specific S/R called from
215        do_oceanic_phys.F
216      - add interface to pkg/salt_plume (filling of saltPlumeFlux) in pkg/thsice.
217    o verification:
218      - move untested set-up to MITgcm_contrib/verification_other.
219    o pkg/seaice:
220      - retire old way of SEAICE_AGE. Now replaced with ALLOW_SITRACER.
221    o pkg/seaice:
222      - seaice_solve4temp.F (keeping results unchanged):
223        * add 2 future run-time params to select which saturation vapor pressure
224          formula is used and how post-iteration fluxes are set.
225          Temporary set these 2 params according to option SOLVE4TEMP_LEGACY;
226        * New piece of code (not used) to update surf. atmos. heat flux F_ia using
227          the linearized expression to stay consistent with tsurf finding.
228      - seaice_freedrift.F avoid floating exception in sqrt(y) since y=sqrt(x*x)-x
229        can be < 0.
230    o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY undef):
231      - remove from F_ia (and from it's derivative dFiDTs1) the contribution of
232        conductive heat flux F_c , and add it explicitly when updating tsurf as
233        solution of: Fc = Fia + d/dT(Fia - Fc) *delta.tsurf
234        so that now F_ia has a consistent meaning through the entire routine.
235        This causes differences at truncation level: update output of fwd exp.
236        global_ocean.cs32x15.seaice.
237    o pkg/seaice:
238      - lots of editing/cleaning in seaice_solve4temp.F + better documentation
239        of arrays, sign/direction of fluxes; no effect on results.
240      - replace hard coded 273.16 (=previous value of celsius2K) by celsius2K
241        in seaice_budget_ocean.F & seaice_solve4temp.F (SOLVE4TEMP_LEGACY part);
242        note: this should have been done before changing celsius2K default.
243      - to keep results unchanged, add back old value of celsius2K in verification
244        exp. input*/data : lab_sea (AD), offline_exf_seaice (fwd+AD) & seaice_obcs
245      - replace hard coded seawater freezing temp in seaice_solve4temp.F (part
246        SOLVE4TEMP_LEGACY) of 271.20 (=previous value of celsius2K + default
247        value of SEAICE_freeze) by celsius2K+SEAICE_freeze so that seawater
248        freezing temp is consistent with value in seaice_growth.F ; this causes
249        differences at machine truncation level: update lab_sea AD output (3/4).
250    o pkg/seaice:
251      - mask (in exf_init_fixed.F) atemp,aqh,evap,precip,runoff,lwflx,areamask
252        and climsst/sss even when using seaice (to prevent calculation that might
253        use SST on land); does not affect any verification exp.
254      - apply mask to taux,tauy (in seaice_get_dynforcing.F); update output
255        of lab_sea.fd & lab_sea.hb87 and global_ocean.cs32x15.seaice_dynmix.
256    o pkg/seaice/seaice_growth.F: add mask to avoid non-zero ice thickness
257      over land (non-legacy code)
258    o vectorize salt_plume package:
259      - add extra code to salt_plume_frac and salt_plume_tendency_apply_s
260      - this code computes plumebk everywhere (also over land), thus requires
261        code to avoid divisions by zero and catch the case of kLev=Nr.
262      - efficiency of salt_plume_frac is still sub-optimal
263    o tools (genmake2):
264      - fix makefile NAME specification (option: -makefile NAME) by adding
265        "-f $MAKEFILE" in few places where it was missing including makedepend
266        command (contribution from Paul).
267    
268    checkpoint63i (2012/01/24)
269    o model/src:
270      - add factorized versions of some EOS code to find_rho.F,
271        define USE_FACTORIZED_EOS to turn it on (default for TARGET_NEC_SX)
272    o model/src:
273      - add celsius2K to namelist PARM01; remove unused recip_rhoNil from PARAMS.h;
274      - change default celsius2K from 273.16 to 273.15
275      - to keep results unchanged, add back old value of celsius2K in verification
276        exp. input*/data : aim.5l_cs, 1D_ocean_ice_column, lab_sea (fwd),
277         global_ocean.cs32x15(seaice) & cpl_aim+ocn(input_atm).
278    o model/src: add a little initialisation trick to find_rho.F and find_alpha.F
279      to make TAF generate vectorizable code
280    o pkg/seaice/seaice_evp.F: add code (copied from CICE) that avoids underflows.
281       Turn on by defining SEAICE_EVP_ELIMINATE_UNDERFLOWS. Most compilers
282       have flags that do this more efficiently.
283    o pkg/diagnostics/diagstats_calc.F
284      - for TARGET_NEC_SX fix the treatment of the scaling factor tmpFac=scaleFact
285    o pkg/obcs (with exch2):
286      - derive OB indices in overlap region from OB-InsideMask (in obcs_init_fixed.F)
287        and remove code (in obcs_readparms.F) which was based on EXCH of indices
288        (through buffer) and did not account for exch2 (e.g., CS-grid) topology.
289    o pkg/exf and seaice exp:
290      - change offline_exf_seaice.seaicetd test exp. to use default DIFF1 value (=0)
291        so that switching off area & heff advection flags does not affect results.
292      - change default EXF_LWDOWN_WITH_EMISSIVITY to #define in EXF_OPTIONS.h
293      - keep exp. seaice_obcs & 1D_ocean_ice_column(ad) unchanged (using #undef
294        EXF_LWDOWN_WITH_EMISSIVITY) and, using pkg/exf default emissivities, update
295        results of verification experiments: 1D_ocean_ice_column(fwd),
296        global_ocean.cs32x15.seaice(fwd+ad) & seaice_dynmix(ad), lab_sea (all 8)
297        and offline_exf_seaice (all 4).
298    o pkg/seaice:
299      - remove array YNEG, RIVER, TMIX (replaced by local var) from common block;
300        remove also areaNm1 & hEffNm1 when SEAICE_GROWTH_LEGACY is undef.
301      - fix bug: areaNm1 & hEffNm1 are needed in seaice_growth (SEAICE_GROWTH_LEGACY)
302        but were not filled when resp. SEAICEadvArea=F & SEAICEadvHeff=F and
303        not multi-dim advection;
304      - fix seaice_growth.F to compile with both SEAICE_GROWTH_LEGACY and
305        SHORTWAVE_HEATING #undef.
306    o optim: make Makefile more robust (?)
307    o pkg/obcs:
308      * fix treatment of obcs_read_pickup for TAF
309    o pkg/shelfice:
310      * add missing initialisation of num_shifwflx
311      * new adjoint verification exp. for isomip
312      * change Prandtl and Schmidt numbers from generic formulations
313        (in terms of model diffus. and visc.) to separate runtime
314        parameters, with Holland and Jenkins (1999) default values.
315    o pkg/exf (interpolation):
316      - extended input field (2 rows) near the N & S poles:
317        * fill in with the symetric value (when even Nb of data in longitude)
318        * add average value at the poles only for scalar quantities ; for vector
319          component interpolation, skip the averaging and keep duplicated values,
320          unless the 2 components have same location (uvInterp=T) in which case
321          interpolate the 2 components together using S/R EXF_INTERP_UV.
322      - new S/R EXF_INTERP_UV to interpolate the 2 components of a vector field
323        together: this allows to account properly for local orientation when
324        averaging at N & S pole.
325      - add CPP option EXF_USE_OLD_INTERP_POLE to recover old results regarding
326        exf-interpolation near N & S poles. Undef by default.
327      - add debug check/print on 1rst iter if debugLevel >=2.
328    o pkg/exf:
329      - change masking flags definition (no longer "parameter"), put them in
330        common block and set them in S/R EXF_INIT_FIXED.
331      - change recognized masking flag from s,u,v to c,w,s since the mask
332        to use (maskC,W,S) depends on position on model grid and has little to
333        do with scalar/vector difference; fix masking if using P-coordinates.
334      - fix masking of wind-stress (was wrong if interpolated or read on A-grid)
335        and update results of exp. global_with_exf (x2).
336      - fix setting of zenith-angle table when SHORTWAVE_HEATING is undef.
337    o pkg/obcs
338      - S/R obcs_calc_stevens: fix a small bug (gammat -> gammas where appropriate)
339    o pkg/exf (interpolation):
340      - assume periodicity in X only if input field cover full longitude range.
341      - improve search for lat. index (supposed to be faster, in ~log2(ny) steps,
342        and should vectorise).
343      - fix input lat of the 2 added row (in case we provide N.pole data).
344    
345    checkpoint63h (2011/12/30)
346    o pkg/seaice:
347      - change declaration of UVM from _RL to _RS in order to get B-grid
348        uIce,vIce monitor when _RS = real*4
349    o pkg/offline:
350      - new S/R OFFLINE_RESET_PARMS for resetting main-model params (switch off flags);
351      - compute vertical velocity if not read from file (switch on exactConserv
352        & staggerTimeStep);
353      - fix output of ptracer monitor iter & time for default PTRACERS_monitorFreq.
354    o verification:
355      - update grid-files (in tutorial_held_suarez_cs/input and fizhi-cs-32x32x40/input)
356        with grid-angle generated using "utils/matlab/cs_grid/cubeCalcAngle.m":
357        fix Pb in yG definition @ 2 missing corners (previously yG was averaged);
358      - update output of exp. global_ocean.cs32x15.viscA4 after changing
359        grid-file angles (used here for coriolis-3d);
360      - remove (or gzip) few files not needed to run fizhi-cs experiments.
361    o pkg/exf (vector interpolation):
362      - rotate vector component toward local grid-axis orientation using grid-angles
363        (stored in GRID.h) instead of locally computed rotation angle; keep old code
364        available with exf option EXF_USE_OLD_VEC_ROTATION (undef by default).
365    o pkg/seaice:
366      - allow to compile with exf options ALLOW_ATM_TEMP or ALLOW_DOWNWARD_RADIATION
367        undefined. Fix and remove the stop when ALLOW_RUNOFF is undefined.
368    o pkg/PKG_OPTIONS.h files:
369      - move #include "CPP_OPTIONS.h" just after #include "PACKAGES_CONFIG.h",
370        outside of the #ifdef ALLOW_THISPKG / #endif block.
371      - update verification/*/code/PKG_OPTIONS.h files.
372    o add a verification experiment (offline_exf_seaice/input.seaice) that test
373      the B-grid LSOR solver
374    o pkg/seaice: sort out emissivity and long wave radiation step 2:
375      - add emissivity for snow and ice as new run-time parameters
376        (unfortunately) that default to the corresponding exf values; this
377        changes results in most verification experiments so that for backward
378        compatibility these parameter have to be set explicitly to inconsistent
379        values (ugly);
380      - the exf-flag EXF_LWDOWN_WITH_EMISSIVITY then gets rid off the hard-wired
381        emissivities of 0.97 associated with lwdownloc in S/R seaice_solve4temp
382        until we agree how to handle this bug properly
383    o pkg/exf (interpolation):
384      - add a set of run-time param ({inputfield}_interpMethod), one for
385        each interpolated input field, to select the interpolation method
386        with a value of zero switching off the interpolation;
387      - print interpolation parameters to standard output;
388      - refine exf_check.F accordingly ; stop if USE_NO_INTERP_RUNOFF is defined
389        (to use instead runoff_interpMethod=0 in data.exf).
390      - simplify default setting of interpolation parameters (for all fields,
391        set position to match model grid cell-center position, leading to trivial
392        interpolation in case of regular Lat-Lon grid) and fix for the case of
393        non-uniform delY.
394    o pkg/exf/exf_radiation.F: add the factor ocean_emissivity to lwdown, for
395       within #ifdef EXF_LWDOWN_WITH_EMISSIVITY/#endif. Unless ocean_emissivity=1.
396       this factor is absolutely required, because the lw exitance (= out-going
397       long wave radiation) is emissivity*stefanBoltzmann*T^4 + rho*lwdown,
398       where the reflectivity rho = 1-emissivity for conservation reasons. Once
399       this is established, we can remove the CPP-Flag (if we want to).
400    o pkg/seaice:
401      - qualify a stop statement in S/R seaice_check: EXF_READ_EVAP and
402        ALLOW_BULKFORMULAE are only required if SEAICE_EXTERNAL_FLUXES is defined
403      - sort out emissivity and long wave radiation, step 1: make SEAICE_emissivity
404        what the name implies (and not emissivity*BoltzmannConstant), this means
405        the old default value of 5.5e-8 now means
406        5.5e-8/5.670e-8 = 0.97001763668430343479 as ocean_emissivity in
407        S/R exf_readparms
408      - FV-discretization of the B-grid LSOR solver, turn on with
409        SEAICE_LSRBNEW. This new solver also involves a slight re-organization
410        of the calling routine dynsolver, so that B and C-grid code look a
411        little more alike.
412      - fix index bugs in ostres.F (B-grid code)
413    o pkg/seaice/seaice_ocean_budget.F: change (unused) code to make it look better
414    o pkg/seaice/seaice_readparms.F: make ocean_emissivity*stefanBoltzmann the
415      default for SEAICE_emissivity, if useEXF; requires setting a wrong
416      parameter value in global_ocean.cs32x15/input.seaice/data.seaice for
417      backward compatiblity
418    o model/src: use sigmaR in calc_ivdc
419    
420    checkpoint63g (2011/12/16)
421    o pkg/seaice/seaice_growth.F:
422      fix heat conservation of the coupled ocean-seaice system.
423      when SEAICE_HEAT_CONSERV_FIX is defined, the mismatch of
424      solid vs liquid water treatment is resolved via QNET.
425    o pkg/seaice/seaice_growth.F:
426      add missing term for sublimation in saltFlux, which was breaking conservation.
427    o pkg/seaice/seaice_model.F:
428      Remove this patholigical case treatment in evolution branch,
429      where it is un-necessary and breaks conservation.
430      Update global_ocean.cs32x15/results accordingly for
431      output.seaice.txt output_adm.seaice.txt and output_adm.seaice_dynmix.txt
432    o model/src:
433      useRealFreshWaterFlux: remove masking of EmPmP (using maskInC) in
434      external_forcing_surf.F and apply mask directly in S/R SOLVE_FOR_PRESSURE.
435    o pkg/obcs:
436      modify Stevens boundary conditions so that S/R obcs_calc_stevens computes
437      tendency for temperature and salinity that is then applied to update
438      theta and salt in S/R obcs_apply_ts; this requires proper masking of all
439      horizontal advection and diffusion contributions on the boundary (in
440      S/Rs gad_advection, gad_calc_rhs, gmredi_rtransport, gmredi_calc_diff), and
441      removing the mask in S/R timestep_tracer. The advantage of this approach is
442      that the updated tracer values include contributions from the surface
443      forcing and vertical diffusion.
444      This modification changes exp4.stevens because of vertical diffusion.
445    o model/src:
446      change non-curvilinear grid setting to also work with exch2 + blank tiles:
447      - move delX,delY to new header file (SET_GRID.h) and adjust length to 1rst
448        face dimensions.
449      - new S/R INI_LOCAL_GRID to define model tile-local grid (using same units
450        as delX,delY) and called from S/R INI_CARTESIAN_GRID, INI_CYLINDER_GRID
451        and INI_SPHERICAL_POLAR_GRID.
452      change test-experiment global_ocean.90x40x15:
453      - split the domain in many more tiles (9x4 tiles of 10x10 each);
454      - switch to exch2 and remove 1 blank-tile (but only for MPI test).
455      - update results of both test (std & dwnslp).
456    o pkg/diagnostics/diagstat_calc.F: fix problem with non-initialised halos in
457       tmp-fields for TARGET_NEC_SX at the cost of extra loops and less vectorisation
458    o model/src:
459      - take sigma-coords related code out of update_etah.F into new S/R UPDATE_ETAWS
460        and fix initialisation when using sigma-coords.
461    o model/src:
462     - improve Gael's changes from Jan 14, 2011 "addition of an 'update' of hfacc etc.
463       to their current value at the beginning of forward_step.F": add a new run-time
464       switch "doResetHFactors" (default=false) and use it to do (or not) the resetting.
465     - set doResetHFactors=T in the following test exp:
466        global_ocean.90x40x15/input (rStar) & input.dwnslp (linFS),
467        global_ocean.cs32x15/input.seaice (rStar), hs94.cs-32x32x5/input.impIGW (linFS)
468        and tutorial_global_oce_in_p (nonLinFS in p)
469    o pkg/ecco
470      - added IES cost term
471    o verification/advect_xz
472      - scale down the depth by 1/100 (from 200 km to just 2.km)
473      - add secondary test using divergent flow, r-star and implicit vertical advection.
474      - add note (check_conserve_TS.txt) and matlab script to check global
475        conservation of T & S with NonLin-FreeSurf and Adams-Bashforth.
476    o pkg/rbcs:
477      - add missing relaxUFile & relaxVFile in namelist (in rbcs_readparms.F).
478    o pkg/obcs (Stevens BCs):
479      - fix various problems in the phase speed computations of the Stevens
480        boundary conditions:
481        - sign error for western and southern boundaries,
482        - time tendencies were underestimated by factor of dTracerLev and some just
483          zero (for multidim advection schemes) -> now estimate time tendencies
484          from difference between previous (n) time level and the one before (n-1);
485          this requires storing a field per tracer per boundary, also in the pickup
486          files.
487        - replace deltaTmom in cflMer/Zon computation with dTracerLev
488        - set default phase velocity to cflMer/Zon
489      - update verification experiment exp4.stevens
490    o pkg/generic_advdiff (implicit_r):
491      - fix implicit vertical advection conservation with AB and/or NonLin-FreeSurf
492        (remove Tr*d/dz(w) in gad_implicit_r.F and add it in gad_calc_rhs.F);
493      - fix implicit vertical diffusion or advection with NonLin FreeSurf
494        (was using current recip_hFacC instead of future recip_hFacC): set future
495        recip_hFac in thermodynamics.F and pass & use it in all vertical implicit
496        solver S/R ;
497      - fill diagnostics of vertical advective fluxes (computed from tendency)
498        when using implicit vert. advection;
499      - update output of exp that uses NonLin-FreeSurf & implicit vertical diffusion:
500         global_ocean.90x40x15 (fwd+AD), global_ocean.cs32x15 (4 fwd +4 AD),
501         tutorial_global_oce_in_p (fwd), tutorial_tracer_adjsens (AD)
502         and cpl_aim+ocn (used in ocean); to be fixed: bottom_ctrl_5x5.
503    o pkg/diagnostics:
504      - add diags for T & S tendency which goes through Adams-Bashforth.
505    
506    checkpoint63f (2011/11/30)
507    o pkg/obcs/obcs_calc_stevens.F:
508      - join some loops to reduce number of if-statements
509      - fix a bug in code for northern and southern boundaries.
510    o pkg/seaice/seaice_init_varia.F
511      - undo resetting UVM=0 that has slipped in unnoticed in r1.49 and
512        caused zero ice-velocities for the B-grid code
513    o pkg/seaice/seaice_init_fixed.F
514      - fix a bug in the initialisation of the second metric terms
515        k2AtC and k2AtZ: k2AtC was set to the value of k2AtZ and k2AtZ was 0.
516      - this affects all seaice configurations with useCurviLinearGrid = .true.
517        and SEAICEuseDynamics = .true. (default) and SEAICEuseMetricTerms
518        = .true. (default)
519      - the only verification experiment affected is global_ocean.cs32x15:
520        icedyn, seaice, and seaice_dynmix (AD)
521    o pkg/thsice/thsice_diagnostics_state.F
522      - only for TARGET_NEC_SX: initialise all of tmpFld, so that overlap does
523        not contain garbage that can lead to surprises in diagstats_calc.F
524    o model/src:
525      - move bi,bj loops inside INTEGR_CONTINUITY ;
526      - call INTEGR_CONTINUITY directly from forward_step.F
527        (previously called from momentum_correction_step.F)
528      - call UPDATE_ETAH from integr_continuity.F and update initialise_varia.F,
529        forward_step.F and pkg/ecco/the_main_loop.F
530    o model/src/do_oceanic_phys.F:
531      - reset addMass to zero only if useICEFRONT ;
532      - separated k-loop for rhoInSitu calculation ;
533      - add 2 diagnostics for wVel*delta^k(Rho) at constant pressure (= WdRHO_P)
534        and at constant T,S (= WdRHOdP);
535      NOTE: change diagnostics WRHOMASS : this is now simply the Vertical transport
536        of In-Situ Density (Anomaly) (=wVel*rho^bar-k) (previously was Vertical
537        transport of locally-referenced potential density);
538        to recover old diag: (WRHOMASS)_old = (WRHOMASS)_new -1/2 * (WdRHOdP)
539    o gluemnc:
540      - replace ncrcat with ncks when adding variables to *.glob.nc
541      - change the way variables without record dimensions are handled so that
542        files that have variables with and without record variables can be glued:
543        add a record dimension with a new unique name to be able to differentiate
544        between variable with and without a-prior record dimensions. Remove
545        this record dimension before adding the variable to the *.glob.nc file.
546        This procedure automatically works also for grid.*.nc files that do not
547        have any record dimension.
548    o verification/cpl_aim+ocn:
549      - generate new reference output on baudelaire (gfortran, mpich2) (previously
550        from old aces-grid cluster, ao + ifort) and update 'run_cpl_test' script.
551    o pkg/obcs/obcs_calc_stevens.F:
552      - add code for northern and southern boundaries.
553      - reorder some loops to save some operations and so that drFBar can be scalar
554    o model/src:
555      - re-arrange extrapolation calculation in Adams-Bashforth S/R (affects machine
556        truncation) and add diagnostics for Adams-Bashforth tendency increment.
557      - update test-exp. AD output:
558        1D_ocean_ice_column, bottom_ctrl_5x5, lab_sea.noseaicedyn, obcs_ctrl;
559      and FWD output: exp4 (x3), fizhi-cs-32x32x40, fizhi-cs-aqualev20,
560        front_relax (x3), global_ocean.90x40x15 (x2), global_ocean.cs32x15 (x5),
561        global_ocean_ebm, ideal_2D_oce, internal_wave, isomip (x3), lab_sea (x4),
562        matrix_example, MLAdjust (x5), natl_box (x2), tutorial_advection_in_gyre,
563        tutorial_global_oce_in_p, tutorial_global_oce_latlon and
564        tutorial_plume_on_slope.
565    o pkg/diagnostics/diagstats_calc.F: add special code for TARGET_NEC_SX
566      that vectorises. This code uses 3 extra 2D fields, F90 array assignments
567      and F90 intrinsic routines SUM, MINVAL, MAXVAL, but since TARGET_NEC_SX
568      does not even come with an F77 compiler anymore, this should not be
569      a limitation
570    
571    checkpoint63e (2011/11/06)
572    o pkg/seaice adjoint of LSR:
573      - substantially rework STORE dirs.
574      - add new flag SEAICE_LSR_ADJOINT_ITER and parameter SOLV_MAX_FIXED
575        this flag will do SOLV_MAX_ITERS but only store SOLV_MAX_FIXED fields
576        and only perform SOLV_MAX_FIXED adjoint iters.
577        If flag SEAICE_LSR_ADJOINT_ITER is undef-ined, the store in the iteration
578        always goes to same record, meaning that the last forward field will be
579        the one used in the adjoint - an approximation.
580      - now produces non-zero LSR-related gradients, and acceptable gradients for
581        An's zonal (x-z) test case (to be checked in)
582      - lab_sea: produces acceptable gradients for lab_sea with forward/backward LSR
583        (but these are screwed up by the thermodynamics in the first place);
584        reduce from 4 to 3 timesteps to avoid t.d. issue as temporary solution;
585        output_adm.txt also reflects changes to seaice_lsr
586      - global_ocean.cs32x15:
587        * the "default" input_ad.seaice has been re-defined to always exclude dynamics
588          (output_adm.seaice.txt was updated)
589        * new input_ad.seaice_dynmix tests a forward LSR / backward free-drift
590          (output_adm.seaice_dynmix.txt)
591    o test-exp. exp4+stevens:
592      - switch off pTracers and nonHydrostatic (restart problems with NH); update output
593    o pkg/seaice (lsr solver):
594      - put coriolis term into FORCEX,Y (as in seaice_evp.F; previously in rhsU,V only);
595        update output (change truncation) of FWD test exp lab_sea & global_ocean.cs32x15
596      - fix SEAICEuseFREEDRIFT for new OBCS version (ndef OBCS_UVICE_OLD)
597      - new parameter "LSR_mixIniGuess" allows (if=2,4) to mix free-drift solution
598        into initial guess for linearised solver; use weight ~ (1/err)^2,4.
599      - compute (with new S/R) and print initial (+ free-driff sol. if available)
600        and final residual of linearised system.
601  o pkg/pp81: add diagnostics for vertical eddy viscosity and diffusivity  o pkg/pp81: add diagnostics for vertical eddy viscosity and diffusivity
602    (requires new subroutines pp81_init_fixed.F/pp81_diagnostics_init.F)    (requires new subroutines pp81_init_fixed.F/pp81_diagnostics_init.F)
603  o pkg/obcs: Stevens BCs (still only for east and west)  o pkg/obcs: Stevens BCs (still only for east and west)
604    - fix Stevens BCs by using intermediate velocities of previous    - fix Stevens BCs by using intermediate velocities of previous
605      time step as "baroclinic" contribution rather velocity of one grid cell      time step as "baroclinic" contribution rather velocity of one grid cell
606      inside the boundaries; more consistent but makes the entire treatment      inside the boundaries; more consistent but makes the entire treatment
607      more complicated, requires new pickup files and two new S/Rs:      more complicated, requires new pickup files and two new S/Rs:
608      obcs_copy_uv_n and obcs_save_uv_n      obcs_copy_uv_n and obcs_save_uv_n
609      keep old version with flag OBCS_STEVENS_USE_INTERIOR_VELOCITY      keep old version with flag OBCS_STEVENS_USE_INTERIOR_VELOCITY
610      (undefined by default)      (undefined by default)
611    - silently move computation of some grid factors into separate loops to    - silently move computation of some grid factors into separate loops to
612      save some recomputations      save some recomputations
613    - add a hack for non-linear free surface    - add a hack for non-linear free surface
614    - add a verification experiment to exp4 that tests this code    - add a verification experiment to exp4 that tests this code

Legend:
Removed from v.1.1522  
changed lines
  Added in v.1.1625

  ViewVC Help
Powered by ViewVC 1.1.22