/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.1469 by ifenty, Wed Jun 29 21:44:26 2011 UTC revision 1.1501 by jmc, Tue Sep 20 22:34:03 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/kpp:
8      - move ptracer/salt correction to KPP diffusivity from calc_3d_diffusivity.F
9        to S/R KPP_CALC_DIFF_PTR (+ add tracer-index to argument list).
10    o optfiles:
11      - merged few MPI specific (*+mpi*) and multi-threads specific (*+mth) optfiles
12        into corresponding standard one, which now support different build:
13        (when using "genmake2 -mpi" for MPI built, "genmake2 -omp" for OpenMP built)
14      - add "darwin_amd64_gfortran" optfile (initially from Constantinos, tested by Gael)
15    o pkg/obcs (seaice):
16      - add missing EXCH for uIce,vIce after applying OBCS;
17      - remove S/R EXF_SWAPFFIELDS_X/Y , disable S/R EXF_SET_OBCS_X/Y by adding
18        argument = number of levels to S/R EXF_SWAPFFIELDS_XZ/YZ and S/R
19        EXF_SET_OBCS_XZ/YZ ; update obcs_exf_load.F;
20      - fix EXF_SET_OBCS_XZ/YZ for multi-threaded (assuming loaded arrays are shared)
21      - verification exp. seaice_obcs: split domain in 2 tiles ; add SIZE.h_mpi
22        and eedata.mth for MPI and mutlti-threaded testing.
23    o pkg/flt:
24      - make FLT EXCH working with multi-threads (and MPI + multi-threads);
25      - use buffer for floats IO (trajectories & profiles); size set in FLT_SIZE.h;
26      - fix pickup and trajectories + profiles output with multi-threads;
27      - add parameter to select group of fields to write along trajectory and
28        profile (default unchanged);
29      - only call PORT_RAND* function when flt_noise <> 0;
30      - add multi-threaded test for verification exp. flt_example.
31    o eesupp/src:
32      - fix S/R ALL_PROC_DIE for MPI+multi-threads.
33      - USE_OMP_THREADING: check that number of threads (from eedata) matches
34        actual number (from env.var. setting).
35    o pkg/ebm:
36      - fix multi-threading in ebm_area_t.F ; clean-up EBM.h header file.
37      - add multi-threaded test for verification exp. global_ocean_ebm
38    
39    checkpoint63b (2011/08/29)
40    o pkg/ebm:
41      - fix sign of runoff;
42      - update directly forcing fields (Qnet,EmPmR) to use standard
43        external_forcing_surf.F (remove ebm_forcing_surf.F);
44      - avoid loading forcing fields a 2nd time (1rst time from ini_forcing.F);
45      - set either tauThetaClimRelax (in data) or tauThetaZonRelax (in data.ebm)
46        and apply relaxation towards corresponding SST field (2-D map or ZonAver).
47      - update global_ocean_ebm parameters file data and update output (fwd+ad).
48    o verification/matrix_example:
49      - split domain in 8 tiles (2x4); add SIZE.h_mpi and eedata.mth for
50        MPI and mutlti-threaded testing.
51    o pkg/matrix:
52      - change name of S/R MATRIX_INIT to S/R MATRIX_INIT_VARIA ;
53      - fix for multi-tiles (add bi,bj indices to exp/impMatrixCounter);
54      - fix for multi-threaded (remove DATA statement);
55      - use standard DIFFERENT_MULTIPLE function;
56      - add MATRIX_OPTIONS.h
57    o verification/matrix_example:
58       To allow to split the domain in several tiles, change the domain size
59        from 31x31 to 32x32 by adding 1 row (on Southern side) + 1 column (on
60        Western side) of land points.
61    o (*_)write_pickup:
62      - fix few bugs in mypackage_read/write_pickup.F
63      - in MDS_WR_METAFILES calls, replace "myTime" by a local copy into
64        array of length 1 (was caught by compiler syntax-check).
65    o pkg/diagnostics (velocity potential solver):
66      - fix initialisation of main diagonal matrix (for overlap values)
67    o tools/build_options:
68      - towards single optfile for MPI and non-MPI built: merge few +mpi optfile
69        into previously non MPI one (linux_am64 pgf77,open64,pathf90,ifort11)
70      - linux_amd64_gfortran: merge +mpi_generic version into standard optfile:
71        * move IEEE flags to DEVEL section; take IEEE flags from +mpi_generic ;
72        * FAST case: for now, keep -O3 with ini_masks_etc.F in NOOPTFILES list;
73        and use "-devel" testreport option for standard testing on baudelaire.
74    o pkg/grdchk:
75      - Assume that all gradient-check position are within the same tile
76        corresponding to global indices (iGloTile,jGloTile) and that
77        positions (i,j indices or nbeg) are local to this tile;
78      - set tile local-indices and proc. number according to tile global-indices;
79      - remove grdchkwhichproc from namelist (retired param);
80      - send adjoint gradient to all procs so that all procs print it to STDOUT;
81      - switch on MPI test for global_ocean.90x40x15 AD test experiment.
82    o adding package bbl (Bottom Boundary Layer)
83      description in MITgcm/pkg/bbl/bbl_description.tex
84      example/test experiment in MITgcm_contrib/bbl
85    o adjoint verifications
86      - changed 5 experiments to multi-tiles
87        * global_ocean.90x40x15
88        * obcs_ctrl
89        * offline_exf_seaice
90        * tutorial_dic_adjoffline
91        * tutorial_tracer_adjsens
92        changed reference output for those that crossed tile boundaries
93        (changed choices of gradient check positions)
94      - with same tiling, switch on MPI test for the last 4 (add SIZE.h_mpi)
95      - temporary bug fix in grdchk_loc.F for obcs
96    o genmake2 & testreport
97      - add target "obj" (just for OBJFILES files) to Makefile;
98      - add option to specify FEXTRAFLAGS on command line.
99    o pkg/mypackage:
100      - remove bi,bj arguments from argument list of S/R MYPACKAGE_CALC_RHS
101    
102    checkpoint63a (2011/08/02)
103    o pkg/diagnostics (velocity potential):
104      - fix velocity-potential calculation when using OBCS: balance net inflow
105        at each level (new S/R OBCS_DIAG_BALANCE).
106      - fix some of the problems with OBCS in stream-function calculation.
107    o pkg/exf/exf_readparms.F
108      - make treatment of optional namelists (EXF_NML_04, EXF_NML_SGRUNOFF,
109        EXF_NML_OBCS) more consistent, so that you need not have these lists
110        in data.exf when they are not used.
111    o optim/optim_readdata.F:
112      - add some output about obcs variables that might help debugging
113      - add a check about nvarlength
114    o pkg/ctrl: once again, fix computation of endrec in s/r ctrl_init_rec
115    o pkg/diagnostics (velocity potential):
116      - fix mask for OBCS (still problems in stream-function with OBCS);
117      - add specific parameter (default = main code CG2D params) for solver;
118      - in case of poor convergence, use solution corresponding to lowest residual.
119    o pkg/seaice/seaice_growth.F: small changes that permit vectorizable
120      adjoint code. In general statements like tmpscal=fld(i,j) are problematic
121      and should be avoided where possible.
122    o model/src (rStar):
123      - include r* effect on reference-state (PhiRef) in totPhiHyd
124        (so that it's really the potential anomaly at the cell center);
125        affect solution only if z* with full pressure in EOS.
126      - test-exp global_ocean.90x40x15: reduce viscA4 (was not stable) and
127        update output (because of z* in totPhiHyd and viscA4 changes);
128      - keep the previous diagnostics as "PHIHYDcR" (closer to potential anomaly
129        @ constant r) until interpolation at constant r is implemented.
130    o pkg/diagnostics
131      - fix RCENTER diagnostics in case cell center is not at interface middle
132    o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use
133      this eos with eosType = 'TEOS10', in data (PARM01). This eos implies
134      that THETA and SALT are "conservative temperature" and "absolute
135      salinity"
136    o pkg/ctrl
137      - fix computation of endrec in s/r ctrl_init_rec
138      - ctrl_pack/unpack_*: remove unused variables and some obsolete code
139    o pkg/seaice/seaice_growth.F
140      - fix recomputation with FENTY_AREA_EXPANSION_CONTRACTION code,
141        remove then obsolete STORE directives
142      - fix STORE directives for tice and tices, so that only the
143        appropriate part of the fields are stored (and not the entire
144        field); update global_ocean.cs32x15.seaice AD output.
145      - cosmetic changes: adjust CPP flags and indentation for better
146        legibilty
147    o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by
148      Chris Wilson)
149    o pkg/gmredi:
150       Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),
151       and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)
152    
153    checkpoint63  (2011/07/11)
154    o pkg/exch2:
155     - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h
156     - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the
157       (2*nTiles)x(nTiles) Cumul-Sum matrix and Master Proc collects all tiles X,Y
158       increments, calculates Cumul-Sum @ tile origin and sends results to each tile.
159    o pkg/diagnostics:
160     - deal with pairs of post-processed diags which are computed together; in
161       particular, re-order list of diags within 1 file to save 2nd computation.
162     - add S/R to compute velocity stream-function (called after velocity-potential
163       calculation) from divergence free transport -> new diagnostics "PsiVEL".
164     - add parameter to select grid-point location where PsiVEL == 0.
165    o eesupp/src:
166       new S/R to calculate cumulated sum on tiled array, corner grid-cell location
167       (specific S/R needed with exch2 topology - for now, just print an error msg)
168  o pkg/shelfice  o pkg/shelfice
169   - Implement friction velocity-dependent transfer coefficients following   - Implement friction velocity-dependent transfer coefficients following
170     Holland and Jenkins, JPO, 1999     Holland and Jenkins, JPO, 1999
# Line 27  o pkg/seaice/seaice_growth.F: Line 188  o pkg/seaice/seaice_growth.F:
188      when SEAICE_ADD_SUBLIMATION_TO_FWBUDGET is used in conjunction with the      when SEAICE_ADD_SUBLIMATION_TO_FWBUDGET is used in conjunction with the
189      non-legacy seaice_solve4temp.      non-legacy seaice_solve4temp.
190    - add diagnostic of the residual sublimation freshwater flux (the freshwater    - add diagnostic of the residual sublimation freshwater flux (the freshwater
191      flux taken from the ocean if the total actual latent heat fluxes exceed      flux taken from the ocean if the total actual latent heat fluxes exceed
192      the maximum)      the maximum)
193    - remove the CPP switch around the *_FWbySublim unit change and move diagnostic    - remove the CPP switch around the *_FWbySublim unit change and move diagnostic
194     fill for SIatmQnt, SIfwSubl, SIatmFW to the end of seaice_growth.F.     fill for SIatmQnt, SIfwSubl, SIatmFW to the end of seaice_growth.F.
Legend:
Removed from v.1.1469  
changed lines
  Added in v.1.1501
  ViewVC Help
Powered by ViewVC 1.1.22