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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/ecco, pkg/ctrl, pkg/grdchk: |
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add cost penalty terms for initial uvel, vvel, eta controls |
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and I/O for prior error files |
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o pkg/mdsio: |
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move mds_check4file.F from eesupp/src to mdsio_check4file.F ; add option |
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(new argument) to check for tiled file in mdsioLocalDir : this fix the |
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restart from pickup_som , pickup_dic (& dic_co2atm) with mdsioLocalDir. |
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o pkg/ctrl: |
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- ctrl_obcsbal.F, ctrl_obcsvol.F: replace last calls of ctrl_getrec by |
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ctrl_get_gen_rec, put a stop statement into ctrl_getrec. Remove |
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unused and superfluous variables |
| 18 |
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- ctrl_get_gen_rec.F: catch the case of xx_genperiod=0. |
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o pkg/ecco |
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- enable adjoint of Stevens OB |
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o pkg/ctrl/ecco/grdchk: |
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- remove global declaration of tmpfldx/yz and tmpfldx/yz2. |
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Fortunately, we do not have any tests for the numerous cpp-flagged |
| 24 |
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option of "obcs as control parameters" so we will never know |
| 25 |
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if this is an improvement (but at least now things compile). |
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- remove an obsolete initialization from ecco_cost_init_barfiles.F |
| 27 |
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- fix some problems within never used ifdefs to make the code compile |
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o pkg/obcs: |
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- Refine Interior mask definition to work with more complex OB (e.g. |
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if OB_Ie < OB_Iw); In case default setting is not sufficient, allows to |
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read in Interior mask from file. Check if Interior mask is consistent |
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with OB list of indices. |
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o pkg/seaice |
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- beginning code for a seaice tracer package, |
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but currently only used for seaice age: SEAICE_AGE |
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SEAICE_num = 4 |
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iTracer = 1: area-weighted ice age |
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= 2: volume-weighted ice age |
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= 3, 4: template for one-year vs. multi-year ice |
| 40 |
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data.seaice has new namelist SEAICE_PARM03 for arrays related to |
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SEAICE_num |
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checkpoint62t (2011/03/05) |
| 44 |
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o pkg/obcs: |
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- obcs_apply_uv.F: change to a 2 steps method, first tangential component; |
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then normal component. This ensures that the normal component is set |
| 47 |
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correctly even when it conficts with tangential setting from an other OB. |
| 48 |
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Affects results of test-experiment seaice_obcs: update the output.txt |
| 49 |
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o pkg/obcs: |
| 50 |
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- add code to monitor statistics of dynamical fields at OB. |
| 51 |
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- take OBCS_BALANCE code out of obcs_calc.F into new S/R OBCS_BALANCE_FLOW : |
| 52 |
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- fix to OBCS_BALANCE code (right hFac ; deal with simple OB intersection). |
| 53 |
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- change default: balance the Net inflow through all OB (instead of balancing |
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each OB separately); keep the old method if setting OBC_balanceFacX < 0. |
| 55 |
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- switch on useOBCSbalance in dome experiment: only correct Western OB outflow |
| 56 |
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to match Nortern OB inflow (OBCS_balanceFacN=0). |
| 57 |
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o pkg/seaice: |
| 58 |
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- redefined actual sea ice age to be ICEAGE/HEFF ifdef SEAICE_AGE_VOL |
| 59 |
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o pkg/seaice (seaice_growth v 1.113): |
| 60 |
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- reverting seaice_growth to v 1.111 in order to have code with exact bit |
| 61 |
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compatibility with MITgcm_contrib/ifenty/Fenty_seaice_thermo_code_merge |
| 62 |
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CPP option SEAICE_OCN_MELT_ACT_ON_AREA removed in v 1.112 is reintroduced |
| 63 |
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runtime flag SEAICEareaFormula is kept but is inactive |
| 64 |
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o model/src: |
| 65 |
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- add new param to scale curvilinear grid distance and area when using |
| 66 |
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a different sphere radius from the grid-files. |
| 67 |
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- test/check multi-threads EXCH applied to local variable (cg2d_x) |
| 68 |
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o adjoint: |
| 69 |
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- enable adjoint of Stevens OB |
| 70 |
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- add dummy_in_dynamics to enable extraction of ADJrhoinsitu |
| 71 |
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(a bit delicate because of potentially modified adj. common block structure; |
| 72 |
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current switch is ALLOW_AUTODIFF_MONITOR_DIAG, could be changed later) |
| 73 |
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|
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checkpoint62s (2011/02/15) |
| 75 |
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o pkg/seaice (seaice_growth v 1.112): |
| 76 |
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- introduce SEAICEareaFormula run time parameter, which selects the recipe for |
| 77 |
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computing the ice cover tendency from effective thickness tendencies. Include |
| 78 |
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Ian Fenty's formula. |
| 79 |
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- remove 'undef SEAICE_OCN_MELT_ACT_ON_AREA' which may now be achieved using |
| 80 |
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SEAICEareaFormula. |
| 81 |
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- simplify notations for the various d_HEFF/d_AREA terms. |
| 82 |
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o pkg/gmredi: |
| 83 |
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- add Boundary-Value-Problem bolus transport (Ferrari etal, OM 2010) code |
| 84 |
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from Christopher Wolfe (UCSD); add partial cell factor in vertical derivative; |
| 85 |
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add a verification test-run (front_relax.bvp) to test GM_useBVP. |
| 86 |
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o pkg/seaice (seaice_growth v 1.111): |
| 87 |
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- for SEAICE_DO_OPEN_WATER_GROWTH, replace Gael's implementation with Ian's. |
| 88 |
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- the new SEAICE_DO_OPEN_WATER_MELT allows open-water air-sea heat fluxes to |
| 89 |
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also melt ice. |
| 90 |
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o pkg/seaice: |
| 91 |
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- McPhee formula for Ice-Ocean fluxes (provided by Ian Fenty). |
| 92 |
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- can be used by #define MCPHEE_OCEAN_ICE_HEAT_FLUX in SEAICE_OPTIONS.h |
| 93 |
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o pkg/cheapaml: |
| 94 |
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- from Nico Wienders: New version of this package. |
| 95 |
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o pkg/flt: |
| 96 |
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- add CPP options to prevent floats to re-enter the opposite side of |
| 97 |
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a periodic domain (default: keep periodicity) |
| 98 |
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o pkg/gmredi: |
| 99 |
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- apply exchange to GM_PsiX,GM_PsiY to get valid values near CS-corners |
| 100 |
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(needed for multi-dim advection). |
| 101 |
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- switch on GM Advective form in global_ocean.cs32x15 and update output.txt |
| 102 |
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o model/src: |
| 103 |
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- fix wrong re-setting of addMass array (ALLOW_ADDFLUID) for atmospheric run. |
| 104 |
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o tutorial_tracer_adjsens |
| 105 |
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- extend to NLFS and replace maskC by hFacC |
| 106 |
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(change reference output accordingly) |
| 107 |
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|
| 108 |
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checkpoint62r (2011/01/24) |
| 109 |
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o testreport: |
| 110 |
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- add option -deloutp (-do) to remove output file after successful run |
| 111 |
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- add option -mfile (-mf) for MPI machile-file and for each test-exp, |
| 112 |
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extract exact list of procs from this file ; adjust COMMAND by |
| 113 |
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replacing TR_MFILE & TR_NPROC with local machile-file & Nb of MPI procs. |
| 114 |
o pkg/ecco: replace old ineffective way of penalizing deviations from |
o pkg/ecco: replace old ineffective way of penalizing deviations from |
| 115 |
first guess (of obcs) with code by Matt Mazloff |
first guess (of obcs) with code by Matt Mazloff |
| 116 |
o pkg/ctrl: add code that allows the use of ALLOW_OBCS?_CONTROL without |
o pkg/ctrl: add code that allows the use of ALLOW_OBCS?_CONTROL without |
| 117 |
exf/cal |
exf/cal |
| 118 |
- ctrl_init: fix initialisation (computation of diffrec) for obcs-ctrl |
- ctrl_init: fix initialisation (computation of diffrec) for obcs-ctrl |
| 119 |
and handle case of obcs?period == 0 |
and handle case of obcs?period == 0 |
| 120 |
Not affected by these changes: There is still an inconsistency in |
Not affected by these changes: There is still an inconsistency in |
| 121 |
the computation of start/endrec for the obcs variables for ALLOW_CAL |
the computation of start/endrec for the obcs variables for ALLOW_CAL |
| 122 |
defined (see comment by Menemenlis, 7-Mar-2003) |
defined (see comment by Menemenlis, 7-Mar-2003) |
| 123 |
- make S/R ctrl_get_gen_rec return something meaningful even if |
- make S/R ctrl_get_gen_rec return something meaningful even if |
| 124 |
ALLOW_CAL is not defined |
ALLOW_CAL is not defined |
| 125 |
- ctrl_getobcs?: simplify code so that it does not need to use |
- ctrl_getobcs?: simplify code so that it does not need to use |
| 126 |
S/R exf_swapfields |
S/R exf_swapfields |
| 127 |
o testreport: |
o testreport: |
| 128 |
allow to test MPI with different number of processors for each experiment: |
allow to test MPI with different number of processors for each experiment: |
| 131 |
o model/src, pkg/autodiff, pkg/ecco, pkg/seaice: |
o model/src, pkg/autodiff, pkg/ecco, pkg/seaice: |
| 132 |
alleviate the need for additional 3D tapes when using |
alleviate the need for additional 3D tapes when using |
| 133 |
the non-inear free surface in the adjoint. This is done |
the non-inear free surface in the adjoint. This is done |
| 134 |
by adding an 'update' of hfacc etc. to their current |
by adding an 'update' of hfacc etc. to their current |
| 135 |
value at the beginning of forward_step.F. |
value at the beginning of forward_step.F. |
| 136 |
o pkg/seaice |
o pkg/seaice |
| 137 |
seaice_lsr: move stress-divergence computations out of outer pseudo- |
seaice_lsr: move stress-divergence computations out of outer pseudo- |
| 138 |
timestepping loop |
timestepping loop |
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