4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/seaice: |
8 |
|
new S/R seaice_solve4temp.F: this is the merged version of Ian Fenty |
9 |
|
code (seaice_budget_ice_if.F) which enable to recover old standard |
10 |
|
code (seaice_budget_ice.F) when option USE_ORIGINAL_SBI is defined. |
11 |
|
temporary: add "#define USE_ORIGINAL_SBI" at the top of seaice_solve4temp.F. |
12 |
|
o model/src (rStar): |
13 |
|
use simple average (not area weighted) of rStarFac at U,V point when using |
14 |
|
vectorInvariant and selectKEscheme=1,3 (consistent with mom. vertical advection) |
15 |
|
update output of exp. fizhi-cs-32x32x40 and fizhi-cs-aqualev20. |
16 |
|
|
17 |
|
checkpoint62k (2010/09/17) |
18 |
|
o adjoint |
19 |
|
* changed verification/global_ocean.cs32x15 ; adjoint now tests |
20 |
|
Adams-Bashforth 3 + NLFS + RSTAR |
21 |
|
* some more modifs required for ECCO-GODAE v4 |
22 |
|
o pkg/seaice |
23 |
|
add SEAICE_AGE_VOL option to use volume instead of area for |
24 |
|
integrating SEAICE_AGE |
25 |
|
o model/src: |
26 |
|
first check-in of sigma & hybrid-sigma coordinate code ; also includes |
27 |
|
non-linear free-surface parts ; but pressure-gradient not yet coded. |
28 |
|
o pkg/ptracers: |
29 |
|
option for ptracer to convert Salt Relax into additional EmP. |
30 |
|
tested in exp. global_ocean.90x40x15.dwnslp (update output) |
31 |
|
|
32 |
|
checkpoint62j (2010/08/25) |
33 |
|
o pkg/ggl90: |
34 |
|
other minor changes: remove 3-D temp array gTKE (+ add argument myIter) |
35 |
|
o pkg/dic: car_flux.F, phos_flux.F |
36 |
|
- reduce number of exp-calls in order to improve performance |
37 |
|
- clean up a little (replace fields by their macros, etc., fix |
38 |
|
typo in CPP-flag) |
39 |
|
o pkg/ggl90: minor changes |
40 |
|
- GGL90diffKrS was removed --> always use GGL90diffKr |
41 |
|
- GGL90viscAr was removed --> replaced with GGL90viscArU, GGL90viscArV |
42 |
|
- hack of mxlMaxFlag=2 --> ensure mixing between first and second level |
43 |
|
(commented out for now) |
44 |
|
- change in max/min operations to ensure that smoothing is ok |
45 |
|
- smoothing of GGL90viscAr was moved to ggl90_calc.F (as done for GGL90diffKr) |
46 |
|
- always use diffKrNrT as background profile (i.e. never use diffKr field) |
47 |
|
o pkg/cfc: bug fix, AREA(i,j,1,bi,bj) -> AREA(i,j,bi,bj) |
48 |
|
o pkg/dic: |
49 |
|
- model/src/impldiff.F: if TARGET_NEC_SX, extend loop ranges for better |
50 |
|
vectorization |
51 |
|
- small bug fix in insol for the unlikely case of a cartesian grid |
52 |
|
- towards vectorizing the dic package: bio_export.F, car_flux.F, phos_flux.F |
53 |
|
+ now vectorize, which also removes adjoint recomputations; |
54 |
|
+ replace integer maksp1 by _RL maskp1 |
55 |
|
+ replace a**x by exp(x*log(a)) in phos_flux.F for speed |
56 |
|
|
57 |
|
checkpoint62i (2010/07/21) |
58 |
|
o pkg/flt: |
59 |
|
- with OBCS: stop floats which enter the OB region |
60 |
|
o model/src: |
61 |
|
- use tempVertAdvScheme & saltVertAdvScheme (instead of horizontal ones) |
62 |
|
for implicit vertical advection. |
63 |
|
o pkg/seaice: |
64 |
|
- account for melting in seaice age evolution. |
65 |
|
- remove double counting of seaice ridging effect on seaice age. |
66 |
|
|
67 |
|
checkpoint62h (2010/06/18) |
68 |
|
o pkg/exch2: |
69 |
|
- remove exch2_*xy_rx files: call was replaced with exch2_*3d_rx(myNz=1). |
70 |
|
o tools/genmake2 |
71 |
|
- remove "-pdefault" option: redundant with the use of "packages.conf"; |
72 |
|
- remove file pkg/pkg_default : set the default as a pkg group |
73 |
|
("default_pkg_list") defined in pkg/pkg_groups; |
74 |
|
- fix for case pkg/pkg_depend is missing (was hanging before); |
75 |
|
- add option "-pgroups" to specify a different pkg_groups than the default. |
76 |
|
o verification/adjustment.cs-32x32x1: |
77 |
|
add a "minimal" set-up test (code_min & input_min) which only compiles |
78 |
|
eesupp/src and the 2 pkgs (exch2 & debug) which don't need model/src & inc. |
79 |
|
o tools/genmake2 |
80 |
|
- extend pkg_depend rules to model & eesupp (e.g., if model depend on [pkg])) |
81 |
|
- fix details of checking for mnc & profile pkg when NetCDF is unavailable. |
82 |
|
o pkg/exf: merge exf_bulk_largeyeager04 into exf_bulkformulae because these |
83 |
|
files are nearly the same anyway. |
84 |
|
Step 1: make exf_bulkformulae look like exf_bulk_largeyeager04: |
85 |
|
- redefinition of tau(i,i) (by a factor of ustar) |
86 |
|
- 1./exf(Const/T) -> exf(-Const/T) (big change in the results) |
87 |
|
- replace rhonil by rhoConstFresh in computation of evap (bug fix) |
88 |
|
- replace u/vstress=tau*rd*ws*cw by tau*rd*u/vwind (changes results) |
89 |
|
- replace |
90 |
|
rd(i,j)= rdn(i,j)/(exf_one - rdn(i,j)/karman*psimh ) |
91 |
|
shn = sh(i,j,bi,bj)*rd(i,j)/rdn(i,j) |
92 |
|
by |
93 |
|
shn = sh(i,j,bi,bj)/(exf_one - rdn(i,j)/karman*psimh ) |
94 |
|
(changes results) |
95 |
|
-> exf_bulkformulae v1.22, |
96 |
|
update verification experiments lab_sea, offline_exf_seaice, seaice_obcs |
97 |
|
(lab_sea: output.hb87.txt 1.11, output.lsr.txt 1.25, output.salt_plume.txt 1.13, |
98 |
|
output.txt 1.63 |
99 |
|
offline_exf_seaice: output.seaicetd.txt 1.7 |
100 |
|
seaice_obcs: output.txt 1.10) |
101 |
|
Step 2: do the actual merge and remove exf_bulk_largeyeager04.F |
102 |
|
-> exf_bulkformulae v1.23, |
103 |
|
unfortunately requires updating lab_sea.salt_plume (6 matching digits), |
104 |
|
and global_ocean.cs32x15.icedyn (only 11 matching digits) |
105 |
|
Also update output_adm of exp. lab_sea (all 4) and offline_exf_seaice. |
106 |
|
o adjoint of exch-1: |
107 |
|
- pass high-level EXCH S/R through TAF (eesupp/src/exch_ad_diff.list) |
108 |
|
(note: was already like this when using EXCH-2) and remove flow dir |
109 |
|
and hand-written AD version of high-level EXCH S/R (pkg/autodiff); |
110 |
|
- provide flow-dir for low-level exch1 S/R (eesupp/src/exch1_ad.flow); |
111 |
|
- update pkg/exch2 diff list. |
112 |
|
|
113 |
|
checkpoint62g (2010/05/19) |
114 |
|
o eesupp/src (exch-1): |
115 |
|
- split exch_rx.F into Forward S/R (exch1_rx.F) and Adjoint S/R (exch1_rx_ad.F) |
116 |
|
and remove argument "simulationMode"; same thing for all exch_*rx_cube.F |
117 |
|
(renamed to exch1_*rx_cube.F). |
118 |
|
- change accordingly exch_*_rx.template and AD version in pkg/autodiff |
119 |
|
to call new exch1 S/R ; update Makefile and .cvsignore. |
120 |
|
- replace call to exch2_xy_rx S/R with exch2_*3d_rx(myNz=1) (will remove |
121 |
|
exch2_xy_rx later) |
122 |
|
Note: after updating your code, need to run "make clean" in eesupp/src |
123 |
|
o test experiment bottom_ctrl_5x5: |
124 |
|
new output_adm.txt with fewer grdchk & less monitor output. |
125 |
|
o model/src: |
126 |
|
remove the call to ini_cori in initialise_varia.F (just keep the usual one |
127 |
|
in initialise_fixed.F). More consistent with coriolis & horizontal grid |
128 |
|
beeing treated in the same way (ini_grid is not called a 2nd time). |
129 |
|
o pkg/exf: |
130 |
|
- rewrite exf_bulk_largeyeager04.F for better vectorization, changes |
131 |
|
global_ocean.cs32x15/input.icedyn (11 digits of agreement), updated |
132 |
|
- fix adjoint (used worked for ALLOW_ATM_WIND defined, works for this now) |
133 |
|
- cosmetic changes to exf_bulkformulae.F to make it look more like |
134 |
|
exf_bulk_largeyeager04.F |
135 |
|
o eesupp/src (exch-1): |
136 |
|
- Fix AD EXCH code for 2-D domain special cases (Nx=1 or Ny=1). |
137 |
|
- Separate buffer filling and MPI sending: allow EXCH-1 to work for local |
138 |
|
array (non-shared) when using MPI+MTH. Also reduces number of BARRIER |
139 |
|
(even without using MPI). |
140 |
|
- Message mode: move RecvAck setting (indicator of buffer being ready) |
141 |
|
from send_put to recv_get S/R (was useless before, but not sure if |
142 |
|
it's much more useful now); |
143 |
|
- Switch the order of sync: MPI-proc 1rst and then threads; |
144 |
|
- take out spin-waiting code (#undef EXCH_USE_SPINNING), use BARRIER instead. |
145 |
|
- fix AD code for communication mode ='get' (but not used). |
146 |
|
o model/src: |
147 |
|
initialise dPhiHydX,dPhiHydY inside calc_grad_phi_hyd.F (so that TAF does |
148 |
|
not drop it in S/R mddynamics, producing NaN in hs94.1x64x5 AD-test exp). |
149 |
|
o utils/matlab/rdmnc.m: adapt to be able to use the generic matlab netcdf API |
150 |
|
o pkg/ctrl: require a specific set of control variables and exf-flags for |
151 |
|
adjoint of seaice (stop in ctrl_check.F if conditions are not satisfied) |
152 |
|
o model/src: |
153 |
|
a) 1rst version of a new driver S/R to turn-off output freq and flags after the |
154 |
|
1rst forward sweep, to avoid over-writing output files during recomputations |
155 |
|
recomputations (& grdchk); called from cost_final.F (& ctrl_init_ctrlvar.F ?) |
156 |
|
b) 2nd version: |
157 |
|
- add specific pkg S/R for seaice & ptracers (called from S/R TURNOFF_MODEL_IO); |
158 |
|
- switch-off more output flags (exf_monFreq, chkPtFreq, dumpInitAndLast, |
159 |
|
writePickupAtEnd) + seaice & ptracers output; |
160 |
|
- do not switch off MNC flags (otherwise, won't get admonitor netcdf file) |
161 |
|
o model/src: |
162 |
|
- new S/R rotate_uv2en_rl (..._rs) that rotates vector fields. |
163 |
|
o pkg/exch2: |
164 |
|
- remove "simulationMode" from arg. list of S/R EXCH2_RX1,2_CUBE ; |
165 |
|
- add argument "signOption" to EXCH2_RX1_CUBE (will be needed for SM exch). |
166 |
|
o pkg/autodiff & exch2: |
167 |
|
process exch_uv_agrid_3d_rx.f & exch2_uv_agrid_3d_rx.f through TAF |
168 |
|
(for now, only if ALLOW_EXCH2 is defined). |
169 |
|
o pkg/autodiff: |
170 |
|
- include PACKAGES_CONFIG.h in exch*ad.flow & exch*ad.F |
171 |
|
(not supposed to be in CPP_OPTIONS.h) to get ALLOW_EXCH2 defined correctly. |
172 |
|
+ clean-up comments (_RS is not always real*4) |
173 |
|
- fix bug in ADEXCH_UV_3D_RX (without EXCH2, was calling the forward exch S/R) |
174 |
|
- add a stop in ADEXCH_UV_AGRID_3D_RX if trying to use it with EXCH2: |
175 |
|
was calling a forward exch2, which is wrong ; used in SEAICE & EXF pkgs. |
176 |
|
o testreport (AD-tests): |
177 |
|
no longer link files from dir "../input" (1rst link files from |
178 |
|
"../input_ad.[xx]" if secondary test "xx" and then from "../input_ad") |
179 |
|
|
180 |
|
checkpoint62f (2010/04/29) |
181 |
|
o model/src/the_main_loop.F: |
182 |
|
adjust store directives for seaice evp and multicategory according to |
183 |
|
pkg/ecco/the_main_loop.F |
184 |
|
o adjoint: |
185 |
|
global_sum_ad was incomplete (noted many times by many people ;) |
186 |
|
nice description by Jean U. as follows: |
187 |
|
* allreduce(var) in global_sum.F can be interpreted as |
188 |
|
reduce(sum) followed by broadcast of sum. |
189 |
|
* The adjoint of that is |
190 |
|
sum(adjoint) followed by broadcast(summed adjoint value) |
191 |
|
or in other words, allreduce(sum, adjoint vars) |
192 |
|
We were missing the sum(adjoint)! |
193 |
|
Benign, except(!) for "global" scalars appearing in tile loops (bi,bj) |
194 |
|
(noted by J.M. Campin, e.g., in cost_ssh_mean, variable offset). |
195 |
|
The fix should produce 16-digit accuracy between |
196 |
|
single-CPU multi-tile (e.g. nSx=2, nPx=1) and |
197 |
|
multi-CPU single-tile (e.g. nSx=1, nPx-2) |
198 |
|
We'll probably change this yet again shortly |
199 |
|
o eesupp/src: |
200 |
|
- fix global_sum_r4 (wrong from previous modif in Jun 2009; ever used ?) |
201 |
|
o pkg/icefront |
202 |
|
- ALLOW_SUBGLACIAL_RUNOFF option adds capability for time-evolving |
203 |
|
specification of addmass array based on a 2D field, which is added |
204 |
|
at bottommost wet level at each horizontal location. |
205 |
|
o model/src: |
206 |
|
horizontal grid initialisation (other than curvilinear): add code for Exch2 IO |
207 |
|
layout; (not always compatible with delX,delY setting; commented out for now). |
208 |
|
o pkg/exch2: |
209 |
|
change tile to processor setting (case nSy*nPy > 1): allows default model mapping |
210 |
|
(myX and myYGlobalLow) to be used for simple (1 facet, no blank tile) config. |
211 |
|
|
212 |
|
checkpoint62e (2010/04/15) |
213 |
|
o pkg/obcs: |
214 |
|
- fix wrong index in OBCS_SPONGE_V for Eastern-OB (reported by David Hebert). |
215 |
|
o pkg/dic: |
216 |
|
-fix bug in fe_chem.F for multi-tile (nSx*nSy > 1) set-up; |
217 |
|
(note: not presently tested in any forward verification exp.) |
218 |
|
update tutorial_global_oce_biogeo AD output file. |
219 |
|
o pkg/exf: |
220 |
|
- account for the variation of albedo as a function of zenith angle |
221 |
|
by defining ALLOW_ZENITHANGLE in EXF_OPTIONS.h |
222 |
|
o build_options: |
223 |
|
- rename "linux_ia64_ifort+mpi_ice_nas" to "linux_amd64_ifort+mpi_ice_nas" |
224 |
|
o pkg/dic: |
225 |
|
change DIC atmos-CO2 box (method 3, dic_int1=3) initialisation & restart: |
226 |
|
- use binary pickup file for restart; |
227 |
|
- initialise atmos-CO2 box from dic_pCO2 parameter; |
228 |
|
- fix multi-threaded. |
229 |
|
o pkg/rbcs: |
230 |
|
- clean-up RBCS code: add RBCS_OPTIONS.h file ; fix multi-threaded ; |
231 |
|
change (+ fix IO calls) type of array RBC_mask from _RL to _RS. |
232 |
|
- add RBCS to exp4 passive tracer 01 (rbcs was previously untested) |
233 |
|
and update output.txt |
234 |
|
o pkg/kpp: |
235 |
|
- add diagnostics for KPP non-local flux of Temp, Salinity and pTracers; |
236 |
|
- change diagnostic of KPP non-local term: output average of KPPghat*KPPdiffKzS |
237 |
|
(= ratio of KPP non-local (salt) flux relative to surface-flux) when |
238 |
|
using pkg/timeave & pkg/diagnostics (diag 'KPPghatK' replaces 'KPPghat '); |
239 |
|
- change pkg/offline to read-in average KPPghat*KPPdiffKzS from file |
240 |
|
KPP_ghatKFile (instead of the average of KPPghat from file KPP_ghatFile). |
241 |
|
o pkg/offline: |
242 |
|
fix bug in S/R OFFLINE_FIELDS_LOAD regarding surfaceForcing conversion factor |
243 |
|
(bug was added in version 1.10 on 2007-08-23). |
244 |
|
o pkg/offline: |
245 |
|
- no need to specify periodicExternalForcing, etc ... to use offline pack |
246 |
|
- offline input files no longer just single prec --> parameter offlineLoadPrec |
247 |
|
o verification/lab_sea: |
248 |
|
change AD test to multi-tile setup and update all 4 AD output. |
249 |
|
NOTE: while cost function values remain very similar, |
250 |
|
gradients are very different, although gradient checks are self-consistent |
251 |
|
Should try to get to the bottom of this (cost function summation order?) |
252 |
|
o pkg/dic: |
253 |
|
in carbon_chem.F, replace log10 (AUTODIFF) with explicit form to avoid |
254 |
|
a weakness of TAF that drops part of double precision in log10 derivative. |
255 |
|
<= changes removed since problem has been fixed in current TAF version 1.9.71 |
256 |
|
update AD output of exp. tutorial_dic_adjoffline & tutorial_global_oce_biogeo. |
257 |
|
o pkg/ecco: |
258 |
|
add missing "_d 0" in cost_readers.F, cost_readtopex.F & cost_readtopexmean.F |
259 |
|
update all 4 lab_sea AD output. |
260 |
|
|
261 |
|
checkpoint62d (2010/03/22) |
262 |
|
o build_options: |
263 |
|
remove '-r8' (and '-i4') from linux_*pgf and linux_*ifort optfiles. |
264 |
|
o remove unbalanced quote (single or double) in commented line of source code |
265 |
|
(may cause some warning with some preprocessor/makedepend versions). |
266 |
|
o pkg/seaice: |
267 |
|
fix seaice_model.F for adjoint (gael) and update AD results of experiments |
268 |
|
lab_sea (std + evp + noseaicedyn) and offline_exf_seaice. |
269 |
|
o testreport: |
270 |
|
add option '-runonly' (short: '-ro') to just do the run part (without make). |
271 |
|
o eesupp: remove JAM communication code (obsolete). |
272 |
|
o add option to genmake2 & testreport to switch "_RS" type to "real*4" |
273 |
|
(if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return |
274 |
|
to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1 |
275 |
|
(update also the output). |
276 |
|
|
277 |
|
checkpoint62c (2010/03/02) |
278 |
|
o tools/build_options : |
279 |
|
move (some) old optfiles from build_options/ to build_options/unsupported/ |
280 |
|
o model/src and pkg/exf |
281 |
|
surface relaxation -- separating data and data.exf options |
282 |
|
The point is to ensure that we specify the surface relaxation |
283 |
|
either in data or in data.exf (but not half and half) and to |
284 |
|
avoid an accidental relaxation to 0 (which happened if a time |
285 |
|
scale was specified but the file name was left empty) |
286 |
|
o model/src model/inc and pkg/mom_common |
287 |
|
ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity |
288 |
|
=> addition to the viscosity field as computed by others schemes |
289 |
|
o tools/build_options: |
290 |
|
- rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile) |
291 |
|
but keep the former optfile for few weeks for smooth transition |
292 |
|
o pkg/ecco |
293 |
|
- allow user defined cost function contributions |
294 |
|
CPP: ALLOW_USERCOST_CONTRIBUTION |
295 |
|
USAGE: compute contributions in cost_usercost_all.F |
296 |
|
- note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was. |
297 |
|
the two options are complementary. |
298 |
|
o pkg/smooth |
299 |
|
- migration from contrib to the main repository |
300 |
|
|
301 |
|
checkpoint62b (2010/01/26) |
302 |
|
o pkg/monitor: |
303 |
|
- change back mon_printstats_rl.F & mon_stats_rl.F and add a stop |
304 |
|
(in case someone forgot to update customized pieces of code) |
305 |
|
o nonHydrostatic: |
306 |
|
- add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested); |
307 |
|
- add a simple 2-D experiment (short_surf_wave) to test it. |
308 |
|
o pkg/icefront: |
309 |
|
adding the shell of, and the hooks to, a new package that |
310 |
|
will model melting and freezing of vertical glacier ice fronts |
311 |
|
o momentum: |
312 |
|
add diagnostics of momentum tendency from Hydrostatic pressure gradient |
313 |
|
(without surf.pressure term: would need a 2nd filling since implicit term). |
314 |
|
o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace |
315 |
|
two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR |
316 |
|
cannot deal with the former |
317 |
|
o cleaning: |
318 |
|
- remove all (except OpenAD) old TLM output from results_ad dirs. |
319 |
|
- remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R) |
320 |
|
- comment out maskH definition (replaced by maskInC) |
321 |
|
o pkg/monitor: |
322 |
|
- change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl |
323 |
|
& mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs. |
324 |
|
|
325 |
|
checkpoint62a (2010/01/15) |
326 |
|
o model/src: |
327 |
|
- bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4) |
328 |
|
o pkg/diagnostics: |
329 |
|
- add optional level number diagnostics (i.e., level number to be define |
330 |
|
explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X". |
331 |
|
- strictly check for valid parser-code(10) ; |
332 |
|
- check if adding diag to the list from the right place. |
333 |
|
o pkg/longstep: |
334 |
|
- change parameters and fix tracer conservation with rstar/nonlinear free surface |
335 |
|
o diagnostics: |
336 |
|
- in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer |
337 |
|
S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics. |
338 |
|
o pkg/diagnostics: |
339 |
|
- Add option for writing vertical integral (sum of selected levels) of an output |
340 |
|
field instead of writing output field levels. Activate this option on a per |
341 |
|
output-file basis, by setting the 2nd character of fileflag to 'I'. |
342 |
|
- Add field-specific information relative to level integral in 3rd postion |
343 |
|
of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate |
344 |
|
vertically (x level-thickness x hFac), "r"=same but without hFac. |
345 |
|
o do_the_model_io: |
346 |
|
- pass end-of-model-run flag as argument, from forward_step to diagnostics_write: |
347 |
|
in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before |
348 |
|
writing pickups and stopping. |
349 |
|
o pkg/diagnostics (for now, only with mdsio): |
350 |
|
- write time information to meta file (and modify accordingly rdmds.m) : |
351 |
|
time-averaged diagnostics output: write starting and ending time of the |
352 |
|
time-averaging interval ; snap-shot diagnostics output remains unchanged; |
353 |
|
o pkg/timeave: |
354 |
|
- S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously |
355 |
|
always Nr), now assumed to be equal to number of levels of averaged field; |
356 |
|
only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F |
357 |
|
o pkg/sbo: |
358 |
|
- fix ocean bottom pressure global-average & 2-D time-ave output (was |
359 |
|
neither initialised nor filled). |
360 |
|
- add starting iteration in suffix of global-average output file |
361 |
|
(to avoid over-writing the file after a restart) |
362 |
|
- use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb). |
363 |
|
o time-average: |
364 |
|
- use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj) |
365 |
|
(pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf, |
366 |
|
ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice) |
367 |
|
this fix DIC_COST cumulative-time array (previously: bi,bj,k) |
368 |
|
- fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice) |
369 |
|
- fix missing accumulation for pkg/opps. |
370 |
|
- cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0) |
371 |
|
(pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81); |
372 |
|
- fix initialisation of time-ave vars and do only full time-step increment |
373 |
|
(i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81); |
374 |
|
o pkg/layers: |
375 |
|
- use standard RW pkg S/R to write the output |
376 |
|
and remove local write_fld version (which had a problem). |
377 |
|
- use simple cumulative-time array (no level index) to fix time-ave S/R calls. |
378 |
|
- fix LAYERS_CALC argument list. |
379 |
|
o pkg/timeave: |
380 |
|
- store cumulative-time in a simple tiled array (drop the level index) |
381 |
|
- add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array. |
382 |
|
o pkg/ocn,aim_compon_interf |
383 |
|
- changes for multi-threaded coupled run. (tested with ifort-11 on danton) |
384 |
|
|
385 |
|
checkpoint62 (2009/12/23) |
386 |
|
o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output. |
387 |
|
(was not previously tested in any other exp.) |
388 |
|
o pkg/monitor: |
389 |
|
- clean-up _RL/_RS version: add specific S/R for statistics with mask & volume: |
390 |
|
mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one |
391 |
|
(mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics. |
392 |
|
- use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F). |
393 |
|
- change del2 calculation. |
394 |
|
- use interior masks (instead of maskH, <- to be remove). |
395 |
|
- shorter monitor suffix for forcing stats ("forcing" instead of "extforcing"). |
396 |
|
o mask & obcs: |
397 |
|
- define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S). |
398 |
|
- move global area computation from ini_masks_etc.F to ini_linear_phisurf.F |
399 |
|
(called after packages_init_fixed) |
400 |
|
o pkg/obcs: |
401 |
|
- move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once. |
402 |
|
Fixes bug in obcs+exf with nSx*nSy.GT.1 |
403 |
|
- fix multi-tile handling in obcs balance code |
404 |
o nonHydrostatic: |
o nonHydrostatic: |
405 |
- Implement AB-3 for non-hydrostatic vertical momentum ; |
- Implement AB-3 for non-hydrostatic vertical momentum ; |
406 |
(change ordering of var. stored in pickup file when using NH) |
(change ordering of var. stored in pickup file when using NH) |
409 |
(in prep. for new NH free surface form). |
(in prep. for new NH free surface form). |
410 |
o pkg/obcs: |
o pkg/obcs: |
411 |
add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe |
add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe |
412 |
o model/src: |
o model/src: |
413 |
fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography |
fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography |
414 |
|
|
415 |
checkpoint61z (2009/12/01) |
checkpoint61z (2009/12/01) |