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revision 1.1224 by jmc, Sat Jan 23 20:28:01 2010 UTC revision 1.1255 by dimitri, Mon Apr 26 18:50:14 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7  o non-hydrostatic:  o pkg/icefront
8      - ALLOW_SUBGLACIAL_RUNOFF option adds capability for time-evolving
9        specification of addmass array based on a 2D field, which is added
10        at bottommost wet level at each horizontal location.
11    o model/src:
12     horizontal grid initialisation (other than curvilinear): add code for Exch2 IO
13     layout; (not always compatible with delX,delY setting; commented out for now).
14    o pkg/exch2:
15     change tile to processor setting (case nSy*nPy > 1): allows default model mapping
16     (myX and myYGlobalLow) to be used for simple (1 facet, no blank tile) config.
17    
18    checkpoint62e (2010/04/15)
19    o pkg/obcs:
20      - fix wrong index in OBCS_SPONGE_V for Eastern-OB (reported by David Hebert).
21    o pkg/dic:
22      -fix bug in fe_chem.F for multi-tile (nSx*nSy > 1) set-up;
23        (note: not presently tested in any forward verification exp.)
24       update tutorial_global_oce_biogeo AD output file.
25    o pkg/exf:
26      - account for the variation of albedo as a function of zenith angle
27        by defining ALLOW_ZENITHANGLE in EXF_OPTIONS.h
28    o build_options:
29     - rename "linux_ia64_ifort+mpi_ice_nas" to "linux_amd64_ifort+mpi_ice_nas"
30    o pkg/dic:
31      change DIC atmos-CO2 box (method 3, dic_int1=3) initialisation & restart:
32      - use binary pickup file for restart;
33      - initialise atmos-CO2 box from dic_pCO2 parameter;
34      - fix multi-threaded.
35    o pkg/rbcs:
36     - clean-up RBCS code: add RBCS_OPTIONS.h file ; fix multi-threaded ;
37       change (+ fix IO calls) type of array RBC_mask from _RL to _RS.
38     - add RBCS to exp4 passive tracer 01 (rbcs was previously untested)
39       and update output.txt
40    o pkg/kpp:
41     - add diagnostics for KPP non-local flux of Temp, Salinity and pTracers;
42     - change diagnostic of KPP non-local term: output average of KPPghat*KPPdiffKzS
43       (= ratio of KPP non-local (salt) flux relative to surface-flux) when
44       using pkg/timeave & pkg/diagnostics (diag 'KPPghatK' replaces 'KPPghat ');
45     - change pkg/offline to read-in average KPPghat*KPPdiffKzS from file
46       KPP_ghatKFile (instead of the average of KPPghat from file KPP_ghatFile).
47    o pkg/offline:
48      fix bug in S/R OFFLINE_FIELDS_LOAD regarding surfaceForcing conversion factor
49      (bug was added in version 1.10 on 2007-08-23).
50    o pkg/offline:
51      - no need to specify periodicExternalForcing, etc ... to use offline pack
52      - offline input files no longer just single prec --> parameter offlineLoadPrec
53    o verification/lab_sea:
54      change AD test to multi-tile setup and update all 4 AD output.
55      NOTE: while cost function values remain very similar,
56      gradients are very different, although gradient checks are self-consistent
57      Should try to get to the bottom of this (cost function summation order?)
58    o pkg/dic:
59      in carbon_chem.F, replace log10 (AUTODIFF) with explicit form to avoid
60      a weakness of TAF that drops part of double precision in log10 derivative.
61      <= changes removed since problem has been fixed in current TAF version 1.9.71
62      update AD output of exp. tutorial_dic_adjoffline & tutorial_global_oce_biogeo.
63    o pkg/ecco:
64      add missing "_d 0" in cost_readers.F, cost_readtopex.F & cost_readtopexmean.F
65      update all 4 lab_sea AD output.
66    
67    checkpoint62d (2010/03/22)
68    o build_options:
69      remove '-r8' (and '-i4') from linux_*pgf and linux_*ifort optfiles.
70    o remove unbalanced quote (single or double) in commented line of source code
71      (may cause some warning with some preprocessor/makedepend versions).
72    o pkg/seaice:
73      fix seaice_model.F for adjoint (gael) and update AD results of experiments
74       lab_sea (std + evp + noseaicedyn) and offline_exf_seaice.
75    o testreport:
76      add option '-runonly' (short: '-ro') to just do the run part (without make).
77    o eesupp: remove JAM communication code (obsolete).
78    o add option to genmake2 & testreport to switch "_RS" type to "real*4"
79      (if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return
80      to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1
81      (update also the output).
82    
83    checkpoint62c (2010/03/02)
84    o tools/build_options :
85       move (some) old optfiles from build_options/ to build_options/unsupported/
86    o model/src and pkg/exf
87       surface relaxation -- separating data and data.exf options
88       The point is to ensure that we specify the surface relaxation
89       either in data or in data.exf (but not half and half) and to
90       avoid an accidental relaxation to 0 (which happened if a time
91       scale was specified but the file name was left empty)
92    o model/src model/inc and pkg/mom_common
93       ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity
94       => addition to the viscosity field as computed by others schemes
95    o tools/build_options:
96      - rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile)
97        but keep the former optfile for few weeks for smooth transition
98    o pkg/ecco
99      - allow user defined cost function contributions
100            CPP: ALLOW_USERCOST_CONTRIBUTION
101            USAGE: compute contributions in cost_usercost_all.F
102      - note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was.
103          the two options are complementary.
104    o pkg/smooth
105      - migration from contrib to the main repository
106    
107    checkpoint62b (2010/01/26)
108    o pkg/monitor:
109      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
110        (in case someone forgot to update customized pieces of code)
111    o nonHydrostatic:
112    - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);    - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
113    - add a simple 2-D experiment (short_surf_wave) to test it.    - add a simple 2-D experiment (short_surf_wave) to test it.
114  o pkg/icefront:  o pkg/icefront:
# Line 22  o cleaning: Line 126  o cleaning:
126    - comment out maskH definition (replaced by maskInC)    - comment out maskH definition (replaced by maskInC)
127  o pkg/monitor:  o pkg/monitor:
128    - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl    - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
129      & mon_calc_stats_rl) to be the RL pendant to mon_printstats_rs & mon_stats_rs.      & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
130    
131  checkpoint62a (2010/01/15)  checkpoint62a (2010/01/15)
132  o model/src:  o model/src:
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