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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o build_options: |
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- rename "linux_ia64_ifort+mpi_ice_nas" to "linux_amd64_ifort+mpi_ice_nas" |
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o pkg/dic: |
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change DIC atmos-CO2 box (method 3, dic_int1=3) initialisation & restart: |
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- use binary pickup file for restart; |
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- initialise atmos-CO2 box from dic_pCO2 parameter; |
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- fix multi-threaded. |
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o pkg/rbcs: |
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- clean-up RBCS code: add RBCS_OPTIONS.h file ; fix multi-threaded ; |
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change (+ fix IO calls) type of array RBC_mask from _RL to _RS. |
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- add RBCS to exp4 passive tracer 01 (rbcs was previously untested) |
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and update output.txt |
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o pkg/kpp: |
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- add diagnostics for KPP non-local flux of Temp, Salinity and pTracers; |
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- change diagnostic of KPP non-local term: output average of KPPghat*KPPdiffKzS |
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(= ratio of KPP non-local (salt) flux relative to surface-flux) when |
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using pkg/timeave & pkg/diagnostics (diag 'KPPghatK' replaces 'KPPghat '); |
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- change pkg/offline to read-in average KPPghat*KPPdiffKzS from file |
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KPP_ghatKFile (instead of the average of KPPghat from file KPP_ghatFile). |
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o pkg/offline: |
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fix bug in S/R OFFLINE_FIELDS_LOAD regarding surfaceForcing conversion factor |
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(bug was added in version 1.10 on 2007-08-23). |
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o pkg/offline: |
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- no need to specify periodicExternalForcing, etc ... to use offline pack |
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- offline input files no longer just single prec --> parameter offlineLoadPrec |
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o verification/lab_sea: |
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change AD test to multi-tile setup and update all 4 AD output. |
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NOTE: while cost function values remain very similar, |
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gradients are very different, although gradient checks are self-consistent |
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Should try to get to the bottom of this (cost function summation order?) |
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o pkg/dic: |
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in carbon_chem.F, replace log10 (AUTODIFF) with explicit form to avoid |
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a weakness of TAF that drops part of double precision in log10 derivative. |
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<= changes removed since problem has been fixed in current TAF version 1.9.71 |
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update AD output of exp. tutorial_dic_adjoffline & tutorial_global_oce_biogeo. |
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o pkg/ecco: |
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add missing "_d 0" in cost_readers.F, cost_readtopex.F & cost_readtopexmean.F |
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update all 4 lab_sea AD output. |
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checkpoint62d (2010/03/22) |
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o build_options: |
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remove '-r8' (and '-i4') from linux_*pgf and linux_*ifort optfiles. |
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o remove unbalanced quote (single or double) in commented line of source code |
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(may cause some warning with some preprocessor/makedepend versions). |
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o pkg/seaice: |
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fix seaice_model.F for adjoint (gael) and update AD results of experiments |
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lab_sea (std + evp + noseaicedyn) and offline_exf_seaice. |
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o testreport: |
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add option '-runonly' (short: '-ro') to just do the run part (without make). |
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o eesupp: remove JAM communication code (obsolete). |
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o add option to genmake2 & testreport to switch "_RS" type to "real*4" |
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(if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return |
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to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1 |
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(update also the output). |
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checkpoint62c (2010/03/02) |
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o tools/build_options : |
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move (some) old optfiles from build_options/ to build_options/unsupported/ |
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o model/src and pkg/exf |
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surface relaxation -- separating data and data.exf options |
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The point is to ensure that we specify the surface relaxation |
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either in data or in data.exf (but not half and half) and to |
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avoid an accidental relaxation to 0 (which happened if a time |
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scale was specified but the file name was left empty) |
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o model/src model/inc and pkg/mom_common |
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ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity |
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=> addition to the viscosity field as computed by others schemes |
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o tools/build_options: |
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- rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile) |
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but keep the former optfile for few weeks for smooth transition |
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o pkg/ecco |
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- allow user defined cost function contributions |
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CPP: ALLOW_USERCOST_CONTRIBUTION |
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USAGE: compute contributions in cost_usercost_all.F |
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- note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was. |
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the two options are complementary. |
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o pkg/smooth |
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- migration from contrib to the main repository |
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checkpoint62b (2010/01/26) |
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o pkg/monitor: |
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- change back mon_printstats_rl.F & mon_stats_rl.F and add a stop |
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(in case someone forgot to update customized pieces of code) |
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o nonHydrostatic: |
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- add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested); |
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- add a simple 2-D experiment (short_surf_wave) to test it. |
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o pkg/icefront: |
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adding the shell of, and the hooks to, a new package that |
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will model melting and freezing of vertical glacier ice fronts |
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o momentum: |
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add diagnostics of momentum tendency from Hydrostatic pressure gradient |
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(without surf.pressure term: would need a 2nd filling since implicit term). |
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o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace |
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two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR |
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cannot deal with the former |
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o cleaning: |
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- remove all (except OpenAD) old TLM output from results_ad dirs. |
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- remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R) |
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- comment out maskH definition (replaced by maskInC) |
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o pkg/monitor: |
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- change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl |
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& mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs. |
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checkpoint62a (2010/01/15) |
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o model/src: |
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- bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4) |
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o pkg/diagnostics: |
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- add optional level number diagnostics (i.e., level number to be define |
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explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X". |
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- strictly check for valid parser-code(10) ; |
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- check if adding diag to the list from the right place. |
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o pkg/longstep: |
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- change parameters and fix tracer conservation with rstar/nonlinear free surface |
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o diagnostics: |
o diagnostics: |
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- in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer |
- in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer |
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S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics. |
S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics. |
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