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revision 1.1262 by jmc, Tue May 4 16:44:43 2010 UTC revision 1.1283 by jmc, Sun Jun 27 20:21:34 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/seaice:
8     - account for melting in seaice age evolution.
9    
10    checkpoint62h (2010/06/18)
11    o pkg/exch2:
12     - remove exch2_*xy_rx files: call was replaced with exch2_*3d_rx(myNz=1).
13    o tools/genmake2
14      - remove "-pdefault" option: redundant with the use of "packages.conf";
15      - remove file pkg/pkg_default : set the default as a pkg group
16        ("default_pkg_list") defined in pkg/pkg_groups;
17      - fix for case pkg/pkg_depend is missing (was hanging before);
18      - add option "-pgroups" to specify a different pkg_groups than the default.
19    o verification/adjustment.cs-32x32x1:
20       add a "minimal" set-up test (code_min & input_min) which only compiles
21       eesupp/src and the 2 pkgs (exch2 & debug) which don't need model/src & inc.
22    o tools/genmake2
23      - extend pkg_depend rules to model & eesupp (e.g., if model depend on [pkg]))
24      - fix details of checking for mnc & profile pkg when NetCDF is unavailable.
25    o pkg/exf: merge exf_bulk_largeyeager04 into exf_bulkformulae because these
26      files are nearly the same anyway.
27      Step 1: make exf_bulkformulae look like exf_bulk_largeyeager04:
28       - redefinition of tau(i,i) (by a factor of ustar)
29       - 1./exf(Const/T) -> exf(-Const/T) (big change in the results)
30       - replace rhonil by rhoConstFresh in computation of evap (bug fix)
31       - replace u/vstress=tau*rd*ws*cw by tau*rd*u/vwind (changes results)
32       - replace
33         rd(i,j)= rdn(i,j)/(exf_one - rdn(i,j)/karman*psimh )
34         shn    = sh(i,j,bi,bj)*rd(i,j)/rdn(i,j)
35         by
36         shn    = sh(i,j,bi,bj)/(exf_one - rdn(i,j)/karman*psimh )
37         (changes results)
38       -> exf_bulkformulae v1.22,
39          update verification experiments lab_sea, offline_exf_seaice, seaice_obcs
40          (lab_sea: output.hb87.txt 1.11, output.lsr.txt 1.25, output.salt_plume.txt 1.13,
41                    output.txt 1.63
42           offline_exf_seaice: output.seaicetd.txt 1.7
43           seaice_obcs: output.txt 1.10)
44      Step 2: do the actual merge and remove exf_bulk_largeyeager04.F
45       -> exf_bulkformulae v1.23,
46          unfortunately requires updating lab_sea.salt_plume (6 matching digits),
47          and global_ocean.cs32x15.icedyn (only 11 matching digits)
48      Also update output_adm of exp. lab_sea (all 4) and offline_exf_seaice.
49    o adjoint of exch-1:
50     - pass high-level EXCH S/R through TAF (eesupp/src/exch_ad_diff.list)
51       (note: was already like this when using EXCH-2) and remove flow dir
52       and hand-written AD version of high-level EXCH S/R (pkg/autodiff);
53     - provide flow-dir for low-level exch1 S/R (eesupp/src/exch1_ad.flow);
54     - update pkg/exch2 diff list.
55    
56    checkpoint62g (2010/05/19)
57    o eesupp/src (exch-1):
58     - split exch_rx.F into Forward S/R (exch1_rx.F) and Adjoint S/R (exch1_rx_ad.F)
59       and remove argument "simulationMode"; same thing for all exch_*rx_cube.F
60       (renamed to exch1_*rx_cube.F).
61     - change accordingly exch_*_rx.template and AD version in pkg/autodiff
62       to call new exch1 S/R ; update Makefile and .cvsignore.
63     - replace call to exch2_xy_rx S/R with exch2_*3d_rx(myNz=1) (will remove
64       exch2_xy_rx later)
65      Note: after updating your code, need to run "make clean" in eesupp/src
66    o test experiment bottom_ctrl_5x5:
67       new output_adm.txt with fewer grdchk & less monitor output.
68    o model/src:
69      remove the call to ini_cori in initialise_varia.F (just keep the usual one
70       in initialise_fixed.F). More consistent with coriolis & horizontal grid
71       beeing treated in the same way (ini_grid is not called a 2nd time).
72    o pkg/exf:
73      - rewrite exf_bulk_largeyeager04.F for better vectorization, changes
74      global_ocean.cs32x15/input.icedyn (11 digits of agreement), updated
75      - fix adjoint (used worked for ALLOW_ATM_WIND defined, works for this now)
76      - cosmetic changes to exf_bulkformulae.F to make it look more like
77        exf_bulk_largeyeager04.F
78    o eesupp/src (exch-1):
79      - Fix AD EXCH code for 2-D domain special cases (Nx=1 or Ny=1).
80      - Separate buffer filling and MPI sending: allow EXCH-1 to work for local
81        array (non-shared) when using MPI+MTH. Also reduces number of BARRIER
82        (even without using MPI).
83      - Message mode: move RecvAck setting (indicator of buffer being ready)
84        from send_put to recv_get S/R (was useless before, but not sure if
85        it's much more useful now);
86      - Switch the order of sync: MPI-proc 1rst and then threads;
87      - take out spin-waiting code (#undef EXCH_USE_SPINNING), use BARRIER instead.
88      - fix AD code for communication mode ='get' (but not used).
89    o model/src:
90      initialise dPhiHydX,dPhiHydY inside calc_grad_phi_hyd.F (so that TAF does
91      not drop it in S/R mddynamics, producing NaN in hs94.1x64x5 AD-test exp).
92    o utils/matlab/rdmnc.m: adapt to be able to use the generic matlab netcdf API
93    o pkg/ctrl: require a specific set of control variables and exf-flags for
94      adjoint of seaice (stop in ctrl_check.F if conditions are not satisfied)
95    o model/src:
96     a) 1rst version of a new driver S/R to turn-off output freq and flags after the
97       1rst forward sweep, to avoid over-writing output files during recomputations
98       recomputations (& grdchk); called from cost_final.F (& ctrl_init_ctrlvar.F ?)
99     b) 2nd version:
100      - add specific pkg S/R for seaice & ptracers (called from S/R TURNOFF_MODEL_IO);
101      - switch-off more output flags (exf_monFreq, chkPtFreq, dumpInitAndLast,
102         writePickupAtEnd) + seaice & ptracers output;
103      - do not switch off MNC flags (otherwise, won't get admonitor netcdf file)
104    o model/src:
105      - new S/R rotate_uv2en_rl (..._rs) that rotates vector fields.
106    o pkg/exch2:
107      - remove "simulationMode" from arg. list of S/R EXCH2_RX1,2_CUBE ;
108      - add argument "signOption" to EXCH2_RX1_CUBE (will be needed for SM exch).
109  o pkg/autodiff & exch2:  o pkg/autodiff & exch2:
110    process exch_uv_agrid_3d_rx.f & exch2_uv_agrid_3d_rx.f through TAF    process exch_uv_agrid_3d_rx.f & exch2_uv_agrid_3d_rx.f through TAF
111    (for now, only if ALLOW_EXCH2 is defined).    (for now, only if ALLOW_EXCH2 is defined).
112  o pkg/autodiff:  o pkg/autodiff:
113    - include PACKAGES_CONFIG.h in exch*ad.flow & exch*ad.F    - include PACKAGES_CONFIG.h in exch*ad.flow & exch*ad.F
114      (not supposed to be in CPP_OPTIONS.h) to get ALLOW_EXCH2 defined correctly.      (not supposed to be in CPP_OPTIONS.h) to get ALLOW_EXCH2 defined correctly.
115     + clean-up comments (_RS is not always real*4)     + clean-up comments (_RS is not always real*4)
116    - fix bug in ADEXCH_UV_3D_RX (without EXCH2, was calling the forward exch S/R)    - fix bug in ADEXCH_UV_3D_RX (without EXCH2, was calling the forward exch S/R)
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