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revision 1.1571 by mlosch, Fri Jan 6 09:40:35 2012 UTC revision 1.1659 by jmc, Fri May 11 23:38:25 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o model/src (CG-solvers):
8     - modify Single-Reduction version (CG2D_SR) in case cg2dMaxIters is reached
9       (similar final residual output and max-Iter number as with standard version);
10     - allows to store and use lowest-residual solution (standard & _SR versions);
11     - cleaning up (remove old, commented out code, LETS_MAKE_JAM ...).
12     - by default, also compile CG2D_SR version (define ALLOW_SRCG in CPP_OPTIONS.h)
13    o eesup/src:
14     - global_vec_sum.F cleaning: add a BARRIER ; update comments ; remove ndef
15       ALWAYS_USE_MPI (no longer needed after fixing usingMPI settings - March 2012)
16    o pkg/salt_plume added to lab_sea/input_ad.noseaicedyn
17    
18    checkpoint63m (2012/04/27)
19    o pkg/shelfice:
20     - account for partical cells in surface level below ice-shelf for hydrostatic
21       pressure calculion (set uniformFreeSurfLev to F); update isomip experiments.
22    o ad test experiments:
23     - update and rename to "ad_optfile.local" local AD-optfile specific to a
24       particular adjoint verification experiment (in verification/*/code_ad/)
25    o pkg/seaice & pkg/exf:
26     - Part two of ECCO-CLIVAR code merges.
27       Completes merge of seaice area relax. code.
28       Requires unified CPP option EXF_ALLOW_SEAICE_RELAX
29       to be set in EXF_OPTIONS.h since this pkg controls its I/O
30       (and avoids second CPP option in SEAICE_OPTIONS.h)
31     - change default value of costIceStart & costIceEnd to a valid date.
32     - add snowPrecip to HSNOW in seaice_growth
33    o pkg/ptracers:
34     - move ptracers summary and setup check into separated S/R ; add a check for
35       valid PTRACERS_Iter0 value (error+stop or just warning).
36    o pkg/cal (+ pkg/ecco):
37     - avoid calling a S/R with 2 times the same arg (FWD: unless both are only used
38       as input; and for AD, unless both are not differentiable (e.g., k index)).
39    o model/src:
40     - define internal flag "uniformFreeSurfLev" (=T when free-surface level-index
41       is everywhere k=1) to speed-up some calculations (by pass kSurf reference);
42       temporary set to usingZCoords value (to be changed to F when using shelfice).
43     - hydrostatic pressure: implement partial cell near the surface also for
44       Z-coordinates (for the case where uniformFreeSurfLev=F); replace test on
45       usingZCoords with test on uniformFreeSurfLev where needed (in NonHyd code).
46    o pkg/ctrl/ctrl_init.F:
47     - add a formal parameter to s/r ctrl_init_rec to print
48       xx_$(ctrl_valiable)_file for easier debugging
49     - move call of cal_* routines into the if-block where they are really
50       needed so that xx_$(ctrl_variable)_period can be 0 or -12 without having
51       to specify a startdate
52    o pkg/seaice:
53     - update comments in SEAICE_OPTIONS.h (+ similar update of lab_sea/code and
54       global_ocean.cs32x15/code versions).
55     - turn on seaice Multi-category (in data.seaice, SEAICE_multDim=7) for
56       verification experiment global_ocean.cs32x15.seaice and update results.
57    o pkg/exf:
58     - new S/R EXF_GETFIELD_START to return starting-time of a forcing field
59       (according to useExfYearlyFields).
60    o pkg/cal:
61     - move calendar setting & summary (previously in cal_readparams.F) into new
62       S/R CAL_INIT_FIXED to be called later in the initialisation process, once
63       length of the simulation is set (after SET_PARMS call); This is an attempt
64       to fix Pb when, e.g.: pkg/longstep, modifies the length of the run.
65     - For safety: keep a record of pkg/cal parameter settings status
66               to allow to STOP if one pkg/cal S/R is called too early.
67     - add a stop in all basic pkg/cal subroutines if called before setting is done.
68     - modify cal_getdate.F: stop when nothing was returned;
69       if called with myIter=-1, simply retrun modelBaseDate (1,2 = startDate_1,_2);
70       this allows to remove "cal.h" from seaice_read_parms.F & init_mnc_vars.F.
71    
72    checkpoint63l (2012/04/04)
73    o pkg/bbl:
74      - fix call to FIND_RHO_2D in bbl_calc_rho.F (case multi-tiles per proc);
75        update global_with_exf output.yearly.txt file.
76    o pkg/cal:
77      - start to clean-up cal_set.F ; fix for the case where baseTime is non-zero.
78      - remove 2 unsused and very short (1 line only) functions ;
79      - remove unsused subroutines from AD-Diff list.
80    o model/src:
81      - start to implement clean wait to stop in initialization S/R (config_check.F,
82         packages_check.F, ini_parms.F and pkg/obcs/obcs_check.F + pkg/mypackage)
83    o folowing PRINT_MESSAGE changes:
84      - remove reminder multiple print to the same file (STDOUT) when multi-threads.
85    o pkg/bbl:
86      - modification so it can work with z*
87      - replace deltaT with dTtracerLev(k) for asynchronous time stepping
88      - global_with_exf/input.yearly verification; changes output.yearly.txt
89    o eesupp/src:
90      - PRINT_MESSAGE: use OpenMP critical instruction (similar to PRINT_ERROR);
91        writing to unit 0 (if unit=errorMessageUnit) extended to the case myThid=1
92      - CHECK_THREADS: specific code if using OpenMP threading: improve checking of
93        # of threads across processors (e.g., different env OMP_NUM_THREADS setting)
94      - improve special preliminary call to EESET_PARMS (if eedata is read 2 times).
95      - when using MPI, always set usingMPI=T ; set default accordingly and stop
96        if not consistent.
97      - ALL_PROC_DIE: add a BARRIER after MPI_FINALIZE call ; skip this when thread
98        argument is zero (in case called within single-thread section).
99    o pkg/fizhi:
100        clean-up turbulence cold-start switch: decided in fizhi_init_vars.F, stored
101        in common bloc (fizhi_coms.h) and then passed as argument up to S/R TURBIO.
102    o pkg/exch2:
103      - add argument "updateCorners" to S/R exch2_get_uv_bounds (enable to
104        activate EXCH_IGNORE_CORNERS in vector EXCH S/R).
105      - switch 1rst EXCH call to IGNORE_CORNERS (instead of UPDATE_CORNERS)
106        but keep the 2nd with UPDATE_CORNERS: this prevents overwriting good data
107        with bad ones coming from a not-yet-updated halo.
108        This should fix the problem when sNx <> sNy and GCD(sNx,sNy) < 2*Olx.
109    o pkg/frazil:
110        move FrzForcT diag from frazil_diagnostics_state.F to frazil_calc_rhs.F
111        http://mitgcm.org/pipermail/mitgcm-devel/2012-March/005384.html
112    o model/src/config_check.F: add a check for OLx>sNx/OLy>sNy
113    o verification/lab_sea
114      * #undef SEAICE_EXCLUDE_FOR_EXACT_AD_TESTING
115      * #define ALLOW_SST_CONTROL & ALLOW_SST_CONTROL
116      * nTimeSteps 3 -> 4
117      * changed reference output accordingly
118    o pkg/ctrl:
119      * fix ctrl_get_gen for xx_sst, xx_sss
120    o pkg/fizhi:
121      - fix 2 calls to S/R GRD2MSC (argument igrd) in update_earth_exports.F
122        update results of exp. fizhi-cs-32x32x40 (fail with only 6 digits for cg2d)
123      - by default, use new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE);
124        fix few out-of-bounds indices in referencing vars (initialise igrd to 1);
125        clean-up fizhi_turb.F (remove unused & uninitialised qdiaglsm array).
126    o pkg/gmredi:
127      - add diagnostic of Redi (main diagnonal) vertical diffusive flux of Temp
128    o pkg/fizhi:
129      - fix few initialisation and multi-tile Pb: aqualev & gridalt now pass the
130        (old)aces open64 tuv test.
131    o pkg/icefront: fix bug and reorder loop in icefront_init_varia.F
132    o pkg/mom_vecinv:
133      - fix 1 loop range in mom_vecinv.F to be like all the other loops which
134        set/update gu,gv/Diss (fix Pb of uninitialised fVerUkp in admom_vecinv
135        with non-lin free-surf).
136    o model/src: move k-loop outside of i/j-loops when (re-)computing R_low
137      in ini/update_masks_etc.F in order to avoid -O3 optimization problems with
138      some compilers (gfortran 4.6.0 on MacOS)
139    o momentum:
140      - separate fVer?(:,:,kUp) & fVer?(:,:,kDown) in argument list of MOM_FLUXFORM
141        & MOM_VECINV subroutines (to help TAF). This fixes Pb of uninitialised
142        fVer?(kUp) in admom_fluxform with non-lin free-surf or bottom control.
143    
144    checkpoint63k (2012/03/17)
145    o model/src:
146       - selectAddFluid (ALLOW_ADDFLUID): add missing term in horizontal momentum
147         flux-form (mom_fluxform.F) and vertical momentum (calc_gw.F) equations.
148       - SOLVE_DIAGONAL: switch default to use adjoinable & vectorized version
149         (#undef SOLVE_DIAGONAL_LOWMEMORY); update output of exp. front_relax.bvp.
150    o model/src: solve_*diagonal.F
151       - replace division with multiplication by inverse (similar to original version)
152         update output of AD exp. global_ocean.90x40x15.
153       - fix pkg/gmredi/gmredi_calc_psi_bvp.F & pkg/ggl90/ggl90_calc.F
154         to enable the use of the vectorized & differentiable solve_tridiagonal.F
155       - test exp. global_ocean.90x40x15/input_ad: switch to advection scheme 20 for
156         vertical advection (to get solve_tridiagonal tested in AD mode).
157    o pkg/seaice: ECCO-CLIVAR merge:
158      1. seaice AREA relaxation
159         * CPP option: SEAICE_ALLOW_AREA_RELAXATION
160         * runtime flag: SEAICE_tauAreaObsRelax
161      2. modified global mean cost imbalance code: CPP option
162          ALLOW_SSH_GLOBMEAN_COST_CONTRIBUTION
163    o another iteration on solve_*diagonal.F
164       Make choices independent of AUTODIFF
165       Default will be the adjoinable vectorized version.
166       Alternative choices are:
167       * non-adjoinable original version with low memory footprint:
168         #define SOLVE_DIAGONAL_LOWMEMORY
169       * still adjoinable but does not vectorize (k as inner-most loop):
170         #define SOLVE_DIAGONAL_KINNER (keeping SOLVE_DIAGONAL_LOWMEMORY undef)
171    o testreport
172     - add option to use a home made wrapper around "make"
173     - remove MITGCM_IEEE env. variable (no longer active)
174    o pkg/shelfice
175     - improve computation of friction velocity for velocity dependent
176       exchange coefficients: include velocities into SHELFICEBoundaryLayer
177       block to average velocities vertically
178     - add TAF store directives for SHI_ALLOW_GAMMAFRICT
179    o Modify diagonal solvers, now three versions (upon request):
180      #ifndef SOLVE_DIAGONAL_AUTODIFF
181        1. default version (dating back a while ago)
182      #else /* def SOLVE_DIAGONAL_AUTODIFF */
183      # ifdef SOLVE_DIAGONAL_KINNER
184        2. adjoinable version with k-innermost loop (G. Forget)
185      # else
186        3. adjoinable vectorized version of 2.
187      # endif
188      #endif /* SOLVE_DIAGONAL_AUTODIFF */
189      All flags are currently set within routines, but could/should be moved to CPP-options.
190      Array bounds for 1. are as before, for 2.,3. cover the entire domain
191      (could be changed for 1. too).
192    o verification/lab_sea (fwd):
193      - update the 4 fwd lab_sea test experiment: no longer SEAICE_GROWTH_LEGACY,
194        use 7 categories (except hb87), new solve4temp params (except salt_plume),
195        constant salinity (=4) or variable salinity (salt_plume) done through
196        SItracer.
197    o pkg/seaice:
198      - rename parameters: SIsalFrac to SEAICE_saltFrac & SIsal0 to SEAICE_salt0;
199      - remove old parameters ( SEAICE_freeze, SEAICEturbFluxFormula, SEAICE_gamma_t,
200         SEAICE_gamma_t_frz, SEAICE_availHeatTaper & SEAICE_availHeatFracFrz)
201        from SEAICE_PARMS.h ; still need to fix seaice_cost_sst.F (broken when
202        SEAICE_freeze got retired) but already better than previously with
203        SEAICE_freeze=123456.7 deg.C;
204      - move setting of facOpenGrow/Melt from SEAICE_INIT_FIXED to SEAICE_READPARMS
205        (safer multi-threaded setting); always set SEAICEuseEVP;
206      - setting of ocean-ice turb. flux coeff: moved from SEAICE_CHECK to
207        SEAICE_READPARMS & SEAICE_INIT_FIXED (this fixes wrong summary report);
208        stop if multiple specifications for the same coeff; make sure default
209        SEAICE_mcPheePiston is compatible with drF(1) & deltaT.
210    o pkg/obcs:
211      - allow to switch to upwind 1rst order advection scheme for the advective
212        flux computation at the open-boundary; disabled for adjoint built.
213    o pkg/ptracers:
214      - rename PTRACERS_RESTART.h -> PTRACERS_START.h
215      - rename ptracers_fields_blocking_exchanges.F -> ptracers_fields_blocking_exch.F
216      - add parameter to decide when to start a tracer; use internal flag to
217        know which tracer to step-forward; switch this internal flag at the top
218        of forward_step.F (new S/R PTRACERS_SWITCH_ONOFF); for now, not enabled
219        for adjoint built.
220    o pkg/seaice:
221      - add SEAICE_SIZE.h anywhere in the code where SEAICE.h is included ;
222      - move MULTDIM declaration and setting from SEAICE.h to SEAICE_SIZE.h ;
223      - keep experiment offline_exf_seaice truly single category (set MULTDIM=1).
224    o pkg/ecco:
225      - fix writing of output file DiagnosCost_ClimSalt/Theta
226        and DiagnosCost_DriftSalt/Theta (if multi-tiles per proc).
227    o pkg/seaice:
228      - add missing initialisation of COR_ICE array in dynsolver.F
229      - merging SEAICE_MULTICATEGORY define and undef cases. Now the same code is
230        compiled either way, and is tested in all exps (multidim was only tested
231        in lab_sea ad before).
232      - cosmetic change to prepare for future addition of ITD. no change to results.
233        no defaults change.
234      - added run time param SEAICE_multDim (7 for SEAICE_MULTICATEGORY, 1 otherwise).
235      - by lack of adequate verification experiments, I further used custom versions
236        of global_ocean.cs32x15 to test multicat or not, with pickup or not. All
237        should be correct.
238      - avoid recomputations in ad.
239    o array initialisation in adjoint mode:
240      1) pkg/mom_common/mom_calc_ke.F:
241        add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC):
242        The S/R which calls MOM_CALC_KE initialises KE but in some recomputation
243        part this initialisation is gone, resulting in Floating Point Exception
244        (caught by open64 compiler with debug option).
245      2) model/src/convective_weights.F
246        set output convectCount over the full array range (instead of doing
247        an update): this fix a similar issue when called within recomputation (adjoint)
248        which could by-pass the initialisation (normally done in the caller S/R).
249    o pkg/seaice:
250      - final version of turbulent flux params, as agreed at MIT ice meet:
251           SEAICE_mcPheePiston (default is ~ 0.000875)
252           SEAICE_mcPheeTaper (default is 0.)
253           SEAICE_frazilFrac (defualt is 1.)
254           SEAICE_mcPheeStepFunc (default is false)
255      - changes results at trunction error level
256      - ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo
257    o added pkg/frazil:
258      - see frazil_description.tex for details
259      - verification experiment is global_with_exf/input.yearly; changes output.yearly.txt
260    o pkg/shelfice/shelfice_thermodynamics.F
261      - fix exponents for velocity dependent exchange coefficients: change
262        from 2/3(=0) to 0.66666666666666667
263      - move computation of velocity dependent exchange coefficients into
264        separate loop, so that it applies to both thermodynamics
265      - move some divisions by constants out of loops
266    
267    checkpoint63j (2012/02/16)
268    o pkg/seaice:
269      - overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc.
270      - SItracer:  added run time params, and allow coupling to ocn salinity.
271    o pkg/seaice: remove (almost) all divisions by constants within loops
272      in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d
273      results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only
274      those, caused by 1/QI -> recip_QI) -> update output.seaice.txt,
275      output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt
276    o pkg/seaice :
277      - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula
278        = 1 or 2, using newly added run time parameter SEAICE_availHeatTaper.
279      - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.
280      - add permanent SItflux diag that corresponds to TFLUX but includes
281        ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.
282      - allow activation/testing of a fix for suspected missing term in
283        ocn-ice heat budget (to be confirmed). To test this, you want to
284        undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param
285        SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.
286      - no change in results, fwd or ad.
287    o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below:
288      - switch to variable freezing point.
289           Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.
290      - bug fix : the sublimation term that was missing is now activated.
291           Results change : cg2d -> 2 digits; ad -> 8-6-6 digits.
292      - bug fix : flooding sign term for SIsal0.NE.0.
293           Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.
294    o pkg/seaice:
295      - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT
296        is now the default, and the old default constant freezing point is recovered
297        with SEAICE_tempFrz0    = -1.96,
298             SEAICE_dTempFrz_dS = 0.,
299      - retire SEAICE_freeze (= the old way of specifycing the constant freezing point)
300      - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.
301      - bug fix (thanks to M. Losch) : the sublimation term that was missing is now
302        activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM.
303      - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)
304        was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).
305      - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in
306        seaice_growth r149 for legacy branch (no results change).
307      - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code
308        from I. Fenty).
309      - results did not change except for global_ocean.cs32x15, mostly due to the
310        switch to variable freezing point (see above item for detail).
311    o pkg/thsice:
312      - fix and simplify interface to salt_plume pkg ; diagnose directly amount of
313        seawater freezing in thsice_calc_thickn (not used).
314    o pkg/seaice: turbulent flux term specification via run time params.
315      - replace CPP switches with run time switches to facilitate testing
316      - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX,
317                       GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR
318      - added runtime parameter : SEAICEturbFluxFormula
319      - move Mcphee constants to SEAICE_PARAMS.h
320      - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;
321                 SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply);
322                 remove seaice_summary call (moved to seaice_init_fixed)
323      - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on
324        SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)
325      - seaice_summary.F : add missing report of read turbulent flux term set up
326                           and SITRACER.
327      - seaice_check.F : check range; inform and stop if retired CPPs are used
328                         (incl. SEAICE_AGE).
329      - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without
330             CPP switch, same computation as before for the different options.
331      - change results at the truncation level.
332    o pkg/seaice:
333      - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:
334        useMaykutSatVapPoly (default=F), postSolvTempIter (default=2) and
335        SEAICE_wetAlbTemp (default=-1e-3). Remove option SEAICE_SOLVE4TEMP_LEGACY.
336      - update verification/*/input*/data.seaice:
337        to reproduce previous results with former #defined SEAICE_SOLVE4TEMP_LEGACY
338        code, set useMaykutSatVapPoly=T & postSolvTempIter=0 ;
339        and to reproduce previous results with former non-SOLVE4TEMP_LEGACY code,
340        set SEAICE_wetAlbTemp=0 & SEAICE_snowThick=0.
341    o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY):
342      - remove LEGACY code for solving for tsurf (A1,A2,A3) but maintain the same
343        algorithm (same choice: useMaykutPolySatVap=T, postSolvTempIter=0);
344        difference in results only due to machine truncation.
345      - remove MAX_TICE (tsurf is always =< TMELT anyway); keep MIN_TICE if using
346        MaykutPolySatVap; keep MIN_LWDOWN.
347      - adapt SEAICE_MODIFY_GROWTH_ADJ code (untested) to non-legacy formulation.
348      - update output of verification exp. lab_sea (4 fwd: 11 cg2d digits except hb87,
349        + 3 AD: 6 digits except evp) and offline_exf_seaice.seaice (12 digits).
350    o pkg/salt_plume:
351      - isolate saltPlumeFlux array exch into a specific S/R called from
352        do_oceanic_phys.F
353      - add interface to pkg/salt_plume (filling of saltPlumeFlux) in pkg/thsice.
354    o verification:
355      - move untested set-up to MITgcm_contrib/verification_other.
356    o pkg/seaice:
357      - retire old way of SEAICE_AGE. Now replaced with ALLOW_SITRACER.
358    o pkg/seaice:
359      - seaice_solve4temp.F (keeping results unchanged):
360        * add 2 future run-time params to select which saturation vapor pressure
361          formula is used and how post-iteration fluxes are set.
362          Temporary set these 2 params according to option SOLVE4TEMP_LEGACY;
363        * New piece of code (not used) to update surf. atmos. heat flux F_ia using
364          the linearized expression to stay consistent with tsurf finding.
365      - seaice_freedrift.F avoid floating exception in sqrt(y) since y=sqrt(x*x)-x
366        can be < 0.
367    o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY undef):
368      - remove from F_ia (and from it's derivative dFiDTs1) the contribution of
369        conductive heat flux F_c , and add it explicitly when updating tsurf as
370        solution of: Fc = Fia + d/dT(Fia - Fc) *delta.tsurf
371        so that now F_ia has a consistent meaning through the entire routine.
372        This causes differences at truncation level: update output of fwd exp.
373        global_ocean.cs32x15.seaice.
374    o pkg/seaice:
375      - lots of editing/cleaning in seaice_solve4temp.F + better documentation
376        of arrays, sign/direction of fluxes; no effect on results.
377      - replace hard coded 273.16 (=previous value of celsius2K) by celsius2K
378        in seaice_budget_ocean.F & seaice_solve4temp.F (SOLVE4TEMP_LEGACY part);
379        note: this should have been done before changing celsius2K default.
380      - to keep results unchanged, add back old value of celsius2K in verification
381        exp. input*/data : lab_sea (AD), offline_exf_seaice (fwd+AD) & seaice_obcs
382      - replace hard coded seawater freezing temp in seaice_solve4temp.F (part
383        SOLVE4TEMP_LEGACY) of 271.20 (=previous value of celsius2K + default
384        value of SEAICE_freeze) by celsius2K+SEAICE_freeze so that seawater
385        freezing temp is consistent with value in seaice_growth.F ; this causes
386        differences at machine truncation level: update lab_sea AD output (3/4).
387    o pkg/seaice:
388      - mask (in exf_init_fixed.F) atemp,aqh,evap,precip,runoff,lwflx,areamask
389        and climsst/sss even when using seaice (to prevent calculation that might
390        use SST on land); does not affect any verification exp.
391      - apply mask to taux,tauy (in seaice_get_dynforcing.F); update output
392        of lab_sea.fd & lab_sea.hb87 and global_ocean.cs32x15.seaice_dynmix.
393    o pkg/seaice/seaice_growth.F: add mask to avoid non-zero ice thickness
394      over land (non-legacy code)
395    o vectorize salt_plume package:
396      - add extra code to salt_plume_frac and salt_plume_tendency_apply_s
397      - this code computes plumebk everywhere (also over land), thus requires
398        code to avoid divisions by zero and catch the case of kLev=Nr.
399      - efficiency of salt_plume_frac is still sub-optimal
400    o tools (genmake2):
401      - fix makefile NAME specification (option: -makefile NAME) by adding
402        "-f $MAKEFILE" in few places where it was missing including makedepend
403        command (contribution from Paul).
404    
405    checkpoint63i (2012/01/24)
406    o model/src:
407      - add factorized versions of some EOS code to find_rho.F,
408        define USE_FACTORIZED_EOS to turn it on (default for TARGET_NEC_SX)
409    o model/src:
410      - add celsius2K to namelist PARM01; remove unused recip_rhoNil from PARAMS.h;
411      - change default celsius2K from 273.16 to 273.15
412      - to keep results unchanged, add back old value of celsius2K in verification
413        exp. input*/data : aim.5l_cs, 1D_ocean_ice_column, lab_sea (fwd),
414         global_ocean.cs32x15(seaice) & cpl_aim+ocn(input_atm).
415    o model/src: add a little initialisation trick to find_rho.F and find_alpha.F
416      to make TAF generate vectorizable code
417    o pkg/seaice/seaice_evp.F: add code (copied from CICE) that avoids underflows.
418       Turn on by defining SEAICE_EVP_ELIMINATE_UNDERFLOWS. Most compilers
419       have flags that do this more efficiently.
420    o pkg/diagnostics/diagstats_calc.F
421      - for TARGET_NEC_SX fix the treatment of the scaling factor tmpFac=scaleFact
422    o pkg/obcs (with exch2):
423      - derive OB indices in overlap region from OB-InsideMask (in obcs_init_fixed.F)
424        and remove code (in obcs_readparms.F) which was based on EXCH of indices
425        (through buffer) and did not account for exch2 (e.g., CS-grid) topology.
426    o pkg/exf and seaice exp:
427      - change offline_exf_seaice.seaicetd test exp. to use default DIFF1 value (=0)
428        so that switching off area & heff advection flags does not affect results.
429      - change default EXF_LWDOWN_WITH_EMISSIVITY to #define in EXF_OPTIONS.h
430      - keep exp. seaice_obcs & 1D_ocean_ice_column(ad) unchanged (using #undef
431        EXF_LWDOWN_WITH_EMISSIVITY) and, using pkg/exf default emissivities, update
432        results of verification experiments: 1D_ocean_ice_column(fwd),
433        global_ocean.cs32x15.seaice(fwd+ad) & seaice_dynmix(ad), lab_sea (all 8)
434        and offline_exf_seaice (all 4).
435    o pkg/seaice:
436      - remove array YNEG, RIVER, TMIX (replaced by local var) from common block;
437        remove also areaNm1 & hEffNm1 when SEAICE_GROWTH_LEGACY is undef.
438      - fix bug: areaNm1 & hEffNm1 are needed in seaice_growth (SEAICE_GROWTH_LEGACY)
439        but were not filled when resp. SEAICEadvArea=F & SEAICEadvHeff=F and
440        not multi-dim advection;
441      - fix seaice_growth.F to compile with both SEAICE_GROWTH_LEGACY and
442        SHORTWAVE_HEATING #undef.
443  o optim: make Makefile more robust (?)  o optim: make Makefile more robust (?)
444  o pkg/shelfice: add missing initialisation of num_shifwflx  o pkg/obcs:
445      * fix treatment of obcs_read_pickup for TAF
446    o pkg/shelfice:
447      * add missing initialisation of num_shifwflx
448      * new adjoint verification exp. for isomip
449      * change Prandtl and Schmidt numbers from generic formulations
450        (in terms of model diffus. and visc.) to separate runtime
451        parameters, with Holland and Jenkins (1999) default values.
452  o pkg/exf (interpolation):  o pkg/exf (interpolation):
453    - extended input field (2 rows) near the N & S poles:    - extended input field (2 rows) near the N & S poles:
454      * fill in with the symetric value (when even Nb of data in longitude)      * fill in with the symetric value (when even Nb of data in longitude)
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