/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.1471 by jmc, Wed Jul 6 01:50:38 2011 UTC revision 1.1502 by jmc, Wed Sep 21 16:29:49 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/exch2:
8      - add new CPP option to disable Cumul-Sum matrix (to save storage when using
9        many tiles); until alternative coding is added, just add a stop.
10    o pkg/kpp:
11      - move ptracer/salt correction to KPP diffusivity from calc_3d_diffusivity.F
12        to S/R KPP_CALC_DIFF_PTR (+ add tracer-index to argument list).
13    o optfiles:
14      - merged few MPI specific (*+mpi*) and multi-threads specific (*+mth) optfiles
15        into corresponding standard one, which now support different build:
16        (when using "genmake2 -mpi" for MPI built, "genmake2 -omp" for OpenMP built)
17      - add "darwin_amd64_gfortran" optfile (initially from Constantinos, tested by Gael)
18    o pkg/obcs (seaice):
19      - add missing EXCH for uIce,vIce after applying OBCS;
20      - remove S/R EXF_SWAPFFIELDS_X/Y , disable S/R EXF_SET_OBCS_X/Y by adding
21        argument = number of levels to S/R EXF_SWAPFFIELDS_XZ/YZ and S/R
22        EXF_SET_OBCS_XZ/YZ ; update obcs_exf_load.F;
23      - fix EXF_SET_OBCS_XZ/YZ for multi-threaded (assuming loaded arrays are shared)
24      - verification exp. seaice_obcs: split domain in 2 tiles ; add SIZE.h_mpi
25        and eedata.mth for MPI and mutlti-threaded testing.
26    o pkg/flt:
27      - make FLT EXCH working with multi-threads (and MPI + multi-threads);
28      - use buffer for floats IO (trajectories & profiles); size set in FLT_SIZE.h;
29      - fix pickup and trajectories + profiles output with multi-threads;
30      - add parameter to select group of fields to write along trajectory and
31        profile (default unchanged);
32      - only call PORT_RAND* function when flt_noise <> 0;
33      - add multi-threaded test for verification exp. flt_example.
34    o eesupp/src:
35      - fix S/R ALL_PROC_DIE for MPI+multi-threads.
36      - USE_OMP_THREADING: check that number of threads (from eedata) matches
37        actual number (from env.var. setting).
38    o pkg/ebm:
39      - fix multi-threading in ebm_area_t.F ; clean-up EBM.h header file.
40      - add multi-threaded test for verification exp. global_ocean_ebm
41    
42    checkpoint63b (2011/08/29)
43    o pkg/ebm:
44      - fix sign of runoff;
45      - update directly forcing fields (Qnet,EmPmR) to use standard
46        external_forcing_surf.F (remove ebm_forcing_surf.F);
47      - avoid loading forcing fields a 2nd time (1rst time from ini_forcing.F);
48      - set either tauThetaClimRelax (in data) or tauThetaZonRelax (in data.ebm)
49        and apply relaxation towards corresponding SST field (2-D map or ZonAver).
50      - update global_ocean_ebm parameters file data and update output (fwd+ad).
51    o verification/matrix_example:
52      - split domain in 8 tiles (2x4); add SIZE.h_mpi and eedata.mth for
53        MPI and mutlti-threaded testing.
54    o pkg/matrix:
55      - change name of S/R MATRIX_INIT to S/R MATRIX_INIT_VARIA ;
56      - fix for multi-tiles (add bi,bj indices to exp/impMatrixCounter);
57      - fix for multi-threaded (remove DATA statement);
58      - use standard DIFFERENT_MULTIPLE function;
59      - add MATRIX_OPTIONS.h
60    o verification/matrix_example:
61       To allow to split the domain in several tiles, change the domain size
62        from 31x31 to 32x32 by adding 1 row (on Southern side) + 1 column (on
63        Western side) of land points.
64    o (*_)write_pickup:
65      - fix few bugs in mypackage_read/write_pickup.F
66      - in MDS_WR_METAFILES calls, replace "myTime" by a local copy into
67        array of length 1 (was caught by compiler syntax-check).
68    o pkg/diagnostics (velocity potential solver):
69      - fix initialisation of main diagonal matrix (for overlap values)
70    o tools/build_options:
71      - towards single optfile for MPI and non-MPI built: merge few +mpi optfile
72        into previously non MPI one (linux_am64 pgf77,open64,pathf90,ifort11)
73      - linux_amd64_gfortran: merge +mpi_generic version into standard optfile:
74        * move IEEE flags to DEVEL section; take IEEE flags from +mpi_generic ;
75        * FAST case: for now, keep -O3 with ini_masks_etc.F in NOOPTFILES list;
76        and use "-devel" testreport option for standard testing on baudelaire.
77    o pkg/grdchk:
78      - Assume that all gradient-check position are within the same tile
79        corresponding to global indices (iGloTile,jGloTile) and that
80        positions (i,j indices or nbeg) are local to this tile;
81      - set tile local-indices and proc. number according to tile global-indices;
82      - remove grdchkwhichproc from namelist (retired param);
83      - send adjoint gradient to all procs so that all procs print it to STDOUT;
84      - switch on MPI test for global_ocean.90x40x15 AD test experiment.
85    o adding package bbl (Bottom Boundary Layer)
86      description in MITgcm/pkg/bbl/bbl_description.tex
87      example/test experiment in MITgcm_contrib/bbl
88    o adjoint verifications
89      - changed 5 experiments to multi-tiles
90        * global_ocean.90x40x15
91        * obcs_ctrl
92        * offline_exf_seaice
93        * tutorial_dic_adjoffline
94        * tutorial_tracer_adjsens
95        changed reference output for those that crossed tile boundaries
96        (changed choices of gradient check positions)
97      - with same tiling, switch on MPI test for the last 4 (add SIZE.h_mpi)
98      - temporary bug fix in grdchk_loc.F for obcs
99    o genmake2 & testreport
100      - add target "obj" (just for OBJFILES files) to Makefile;
101      - add option to specify FEXTRAFLAGS on command line.
102    o pkg/mypackage:
103      - remove bi,bj arguments from argument list of S/R MYPACKAGE_CALC_RHS
104    
105    checkpoint63a (2011/08/02)
106    o pkg/diagnostics (velocity potential):
107      - fix velocity-potential calculation when using OBCS: balance net inflow
108        at each level (new S/R OBCS_DIAG_BALANCE).
109      - fix some of the problems with OBCS in stream-function calculation.
110    o pkg/exf/exf_readparms.F
111      - make treatment of optional namelists (EXF_NML_04, EXF_NML_SGRUNOFF,
112        EXF_NML_OBCS) more consistent, so that you need not have these lists
113        in data.exf when they are not used.
114    o optim/optim_readdata.F:
115      - add some output about obcs variables that might help debugging
116      - add a check about nvarlength
117    o pkg/ctrl: once again, fix computation of endrec in s/r ctrl_init_rec
118    o pkg/diagnostics (velocity potential):
119      - fix mask for OBCS (still problems in stream-function with OBCS);
120      - add specific parameter (default = main code CG2D params) for solver;
121      - in case of poor convergence, use solution corresponding to lowest residual.
122    o pkg/seaice/seaice_growth.F: small changes that permit vectorizable
123      adjoint code. In general statements like tmpscal=fld(i,j) are problematic
124      and should be avoided where possible.
125    o model/src (rStar):
126      - include r* effect on reference-state (PhiRef) in totPhiHyd
127        (so that it's really the potential anomaly at the cell center);
128        affect solution only if z* with full pressure in EOS.
129      - test-exp global_ocean.90x40x15: reduce viscA4 (was not stable) and
130        update output (because of z* in totPhiHyd and viscA4 changes);
131      - keep the previous diagnostics as "PHIHYDcR" (closer to potential anomaly
132        @ constant r) until interpolation at constant r is implemented.
133    o pkg/diagnostics
134      - fix RCENTER diagnostics in case cell center is not at interface middle
135    o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use
136      this eos with eosType = 'TEOS10', in data (PARM01). This eos implies
137      that THETA and SALT are "conservative temperature" and "absolute
138      salinity"
139    o pkg/ctrl
140      - fix computation of endrec in s/r ctrl_init_rec
141      - ctrl_pack/unpack_*: remove unused variables and some obsolete code
142    o pkg/seaice/seaice_growth.F
143      - fix recomputation with FENTY_AREA_EXPANSION_CONTRACTION code,
144        remove then obsolete STORE directives
145      - fix STORE directives for tice and tices, so that only the
146        appropriate part of the fields are stored (and not the entire
147        field); update global_ocean.cs32x15.seaice AD output.
148      - cosmetic changes: adjust CPP flags and indentation for better
149        legibilty
150    o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by
151      Chris Wilson)
152    o pkg/gmredi:
153       Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),
154       and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)
155    
156    checkpoint63  (2011/07/11)
157    o pkg/exch2:
158     - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h
159     - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the
160       (2*nTiles)x(nTiles) Cumul-Sum matrix and Master Proc collects all tiles X,Y
161       increments, calculates Cumul-Sum @ tile origin and sends results to each tile.
162  o pkg/diagnostics:  o pkg/diagnostics:
163   - deal with pairs of post-processed diags which are computed together; in   - deal with pairs of post-processed diags which are computed together; in
164     particular, re-order list of diags within 1 file to save 2nd computation.     particular, re-order list of diags within 1 file to save 2nd computation.
Legend:
Removed from v.1.1471  
changed lines
  Added in v.1.1502
  ViewVC Help
Powered by ViewVC 1.1.22