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revision 1.1474 by jmc, Thu Jul 14 17:06:12 2011 UTC revision 1.1495 by jmc, Fri Aug 26 20:27:15 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o verification/matrix_example:
8      - split domain in 8 tiles (2x4); add SIZE.h_mpi and eedata.mth for
9        MPI and mutlti-threaded testing.
10    o pkg/matrix:
11      - change name of S/R MATRIX_INIT to S/R MATRIX_INIT_VARIA ;
12      - fix for multi-tiles (add bi,bj indices to exp/impMatrixCounter);
13      - fix for multi-threaded (remove DATA statement);
14      - use standard DIFFERENT_MULTIPLE function;
15      - add MATRIX_OPTIONS.h
16    o verification/matrix_example:
17       To allow to split the domain in several tiles, change the domain size
18        from 31x31 to 32x32 by adding 1 row (on Southern side) + 1 column (on
19        Western side) of land points.
20    o (*_)write_pickup:
21      - fix few bugs in mypackage_read/write_pickup.F
22      - in MDS_WR_METAFILES calls, replace "myTime" by a local copy into
23        array of length 1 (was caught by compiler syntax-check).
24    o pkg/diagnostics (velocity potential solver):
25      - fix initialisation of main diagonal matrix (for overlap values)
26    o tools/build_options:
27      - towards single optfile for MPI and non-MPI built: merge few +mpi optfile
28        into previously non MPI one (linux_am64 pgf77,open64,pathf90,ifort11)
29      - linux_amd64_gfortran: merge +mpi_generic version into standard optfile:
30        * move IEEE flags to DEVEL section; take IEEE flags from +mpi_generic ;
31        * FAST case: for now, keep -O3 with ini_masks_etc.F in NOOPTFILES list;
32        and use "-devel" testreport option for standard testing on baudelaire.
33    o pkg/grdchk:
34      - Assume that all gradient-check position are within the same tile
35        corresponding to global indices (iGloTile,jGloTile) and that
36        positions (i,j indices or nbeg) are local to this tile;
37      - set tile local-indices and proc. number according to tile global-indices;
38      - remove grdchkwhichproc from namelist (retired param);
39      - send adjoint gradient to all procs so that all procs print it to STDOUT;
40      - switch on MPI test for global_ocean.90x40x15 AD test experiment.
41    o adding package bbl (Bottom Boundary Layer)
42      description in MITgcm/pkg/bbl/bbl_description.tex
43      example/test experiment in MITgcm_contrib/bbl
44    o adjoint verifications
45      - changed 5 experiments to multi-tiles
46        * global_ocean.90x40x15
47        * obcs_ctrl
48        * offline_exf_seaice
49        * tutorial_dic_adjoffline
50        * tutorial_tracer_adjsens
51        changed reference output for those that crossed tile boundaries
52        (changed choices of gradient check positions)
53      - with same tiling, switch on MPI test for the last 4 (add SIZE.h_mpi)
54      - temporary bug fix in grdchk_loc.F for obcs
55    o genmake2 & testreport
56      - add target "obj" (just for OBJFILES files) to Makefile;
57      - add option to specify FEXTRAFLAGS on command line.
58    o pkg/mypackage:
59      - remove bi,bj arguments from argument list of S/R MYPACKAGE_CALC_RHS
60    
61    checkpoint63a (2011/08/02)
62    o pkg/diagnostics (velocity potential):
63      - fix velocity-potential calculation when using OBCS: balance net inflow
64        at each level (new S/R OBCS_DIAG_BALANCE).
65      - fix some of the problems with OBCS in stream-function calculation.
66    o pkg/exf/exf_readparms.F
67      - make treatment of optional namelists (EXF_NML_04, EXF_NML_SGRUNOFF,
68        EXF_NML_OBCS) more consistent, so that you need not have these lists
69        in data.exf when they are not used.
70    o optim/optim_readdata.F:
71      - add some output about obcs variables that might help debugging
72      - add a check about nvarlength
73    o pkg/ctrl: once again, fix computation of endrec in s/r ctrl_init_rec
74    o pkg/diagnostics (velocity potential):
75      - fix mask for OBCS (still problems in stream-function with OBCS);
76      - add specific parameter (default = main code CG2D params) for solver;
77      - in case of poor convergence, use solution corresponding to lowest residual.
78    o pkg/seaice/seaice_growth.F: small changes that permit vectorizable
79      adjoint code. In general statements like tmpscal=fld(i,j) are problematic
80      and should be avoided where possible.
81    o model/src (rStar):
82      - include r* effect on reference-state (PhiRef) in totPhiHyd
83        (so that it's really the potential anomaly at the cell center);
84        affect solution only if z* with full pressure in EOS.
85      - test-exp global_ocean.90x40x15: reduce viscA4 (was not stable) and
86        update output (because of z* in totPhiHyd and viscA4 changes);
87      - keep the previous diagnostics as "PHIHYDcR" (closer to potential anomaly
88        @ constant r) until interpolation at constant r is implemented.
89    o pkg/diagnostics
90      - fix RCENTER diagnostics in case cell center is not at interface middle
91    o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use
92      this eos with eosType = 'TEOS10', in data (PARM01). This eos implies
93      that THETA and SALT are "conservative temperature" and "absolute
94      salinity"
95    o pkg/ctrl
96      - fix computation of endrec in s/r ctrl_init_rec
97      - ctrl_pack/unpack_*: remove unused variables and some obsolete code
98    o pkg/seaice/seaice_growth.F
99      - fix recomputation with FENTY_AREA_EXPANSION_CONTRACTION code,
100        remove then obsolete STORE directives
101      - fix STORE directives for tice and tices, so that only the
102        appropriate part of the fields are stored (and not the entire
103        field); update global_ocean.cs32x15.seaice AD output.
104      - cosmetic changes: adjust CPP flags and indentation for better
105        legibilty
106    o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by
107      Chris Wilson)
108  o pkg/gmredi:  o pkg/gmredi:
109     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),
110     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)
111    
112  checkpoint63 (2011/07/11)  checkpoint63  (2011/07/11)
113  o pkg/exch2:  o pkg/exch2:
114   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h
115   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the
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