4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/obcs: |
8 |
|
- obcs_apply_uv.F: change to a 2 steps method, first tangential component; |
9 |
|
then normal component. This ensures that the normal component is set |
10 |
|
correctly even when it conficts with tangential setting from an other OB. |
11 |
|
Affects results of test-experiment seaice_obcs: update the output.txt |
12 |
|
o pkg/obcs: |
13 |
|
- add code to monitor statistics of dynamical fields at OB. |
14 |
|
- take OBCS_BALANCE code out of obcs_calc.F into new S/R OBCS_BALANCE_FLOW : |
15 |
|
- fix to OBCS_BALANCE code (right hFac ; deal with simple OB intersection). |
16 |
|
- change default: balance the Net inflow through all OB (instead of balancing |
17 |
|
each OB separately); keep the old method if setting OBC_balanceFacX < 0. |
18 |
|
- switch on useOBCSbalance in dome experiment: only correct Western OB outflow |
19 |
|
to match Nortern OB inflow (OBCS_balanceFacN=0). |
20 |
|
o pkg/seaice: |
21 |
|
- redefined actual sea ice age to be ICEAGE/HEFF ifdef SEAICE_AGE_VOL |
22 |
|
o pkg/seaice (seaice_growth v 1.113): |
23 |
|
- reverting seaice_growth to v 1.111 in order to have code with exact bit |
24 |
|
compatibility with MITgcm_contrib/ifenty/Fenty_seaice_thermo_code_merge |
25 |
|
CPP option SEAICE_OCN_MELT_ACT_ON_AREA removed in v 1.112 is reintroduced |
26 |
|
runtime flag SEAICEareaFormula is kept but is inactive |
27 |
|
o model/src: |
28 |
|
- add new param to scale curvilinear grid distance and area when using |
29 |
|
a different sphere radius from the grid-files. |
30 |
|
- test/check multi-threads EXCH applied to local variable (cg2d_x) |
31 |
|
|
32 |
|
checkpoint62s (2011/02/15) |
33 |
|
o pkg/seaice (seaice_growth v 1.112): |
34 |
|
- introduce SEAICEareaFormula run time parameter, which selects the recipe for |
35 |
|
computing the ice cover tendency from effective thickness tendencies. Include |
36 |
|
Ian Fenty's formula. |
37 |
|
- remove 'undef SEAICE_OCN_MELT_ACT_ON_AREA' which may now be achieved using |
38 |
|
SEAICEareaFormula. |
39 |
|
- simplify notations for the various d_HEFF/d_AREA terms. |
40 |
|
o pkg/gmredi: |
41 |
|
- add Boundary-Value-Problem bolus transport (Ferrari etal, OM 2010) code |
42 |
|
from Christopher Wolfe (UCSD); add partial cell factor in vertical derivative; |
43 |
|
add a verification test-run (front_relax.bvp) to test GM_useBVP. |
44 |
|
o pkg/seaice (seaice_growth v 1.111): |
45 |
|
- for SEAICE_DO_OPEN_WATER_GROWTH, replace Gael's implementation with Ian's. |
46 |
|
- the new SEAICE_DO_OPEN_WATER_MELT allows open-water air-sea heat fluxes to |
47 |
|
also melt ice. |
48 |
|
o pkg/seaice: |
49 |
|
- McPhee formula for Ice-Ocean fluxes (provided by Ian Fenty). |
50 |
|
- can be used by #define MCPHEE_OCEAN_ICE_HEAT_FLUX in SEAICE_OPTIONS.h |
51 |
|
o pkg/cheapaml: |
52 |
|
- from Nico Wienders: New version of this package. |
53 |
|
o pkg/flt: |
54 |
|
- add CPP options to prevent floats to re-enter the opposite side of |
55 |
|
a periodic domain (default: keep periodicity) |
56 |
|
o pkg/gmredi: |
57 |
|
- apply exchange to GM_PsiX,GM_PsiY to get valid values near CS-corners |
58 |
|
(needed for multi-dim advection). |
59 |
|
- switch on GM Advective form in global_ocean.cs32x15 and update output.txt |
60 |
|
o model/src: |
61 |
|
- fix wrong re-setting of addMass array (ALLOW_ADDFLUID) for atmospheric run. |
62 |
|
o tutorial_tracer_adjsens |
63 |
|
- extend to NLFS and replace maskC by hFacC |
64 |
|
(change reference output accordingly) |
65 |
|
|
66 |
|
checkpoint62r (2011/01/24) |
67 |
|
o testreport: |
68 |
|
- add option -deloutp (-do) to remove output file after successful run |
69 |
|
- add option -mfile (-mf) for MPI machile-file and for each test-exp, |
70 |
|
extract exact list of procs from this file ; adjust COMMAND by |
71 |
|
replacing TR_MFILE & TR_NPROC with local machile-file & Nb of MPI procs. |
72 |
|
o pkg/ecco: replace old ineffective way of penalizing deviations from |
73 |
|
first guess (of obcs) with code by Matt Mazloff |
74 |
|
o pkg/ctrl: add code that allows the use of ALLOW_OBCS?_CONTROL without |
75 |
|
exf/cal |
76 |
|
- ctrl_init: fix initialisation (computation of diffrec) for obcs-ctrl |
77 |
|
and handle case of obcs?period == 0 |
78 |
|
Not affected by these changes: There is still an inconsistency in |
79 |
|
the computation of start/endrec for the obcs variables for ALLOW_CAL |
80 |
|
defined (see comment by Menemenlis, 7-Mar-2003) |
81 |
|
- make S/R ctrl_get_gen_rec return something meaningful even if |
82 |
|
ALLOW_CAL is not defined |
83 |
|
- ctrl_getobcs?: simplify code so that it does not need to use |
84 |
|
S/R exf_swapfields |
85 |
|
o testreport: |
86 |
|
allow to test MPI with different number of processors for each experiment: |
87 |
|
create file "SIZE.h.mpi" in each build dir. |
88 |
|
Note: update of "-command" argument not yet implemented. |
89 |
|
o model/src, pkg/autodiff, pkg/ecco, pkg/seaice: |
90 |
|
alleviate the need for additional 3D tapes when using |
91 |
|
the non-inear free surface in the adjoint. This is done |
92 |
|
by adding an 'update' of hfacc etc. to their current |
93 |
|
value at the beginning of forward_step.F. |
94 |
|
o pkg/seaice |
95 |
|
seaice_lsr: move stress-divergence computations out of outer pseudo- |
96 |
|
timestepping loop |
97 |
|
o pkg/obcs/obcs_prescribe_read.F: move 'CALL OBCS_EXTERNAL_FIELDS_LOAD' |
98 |
|
up, so that the calls of the ctrl_* subroutines are really at the end |
99 |
|
of the routine. |
100 |
|
o pkg/gmredi: |
101 |
|
allow to specify a 2-D horizontal map and a 1-D vertical profil |
102 |
|
as scaling factor for Isopycnal diffusivity (Redi) and GM diffusivity. |
103 |
|
o pkg/seaice: |
104 |
|
move lsr iterations from seaice_dynsolver to seaice_lsr. |
105 |
|
o pkg/seaice: |
106 |
|
reduce memory footprint of seaice mutldim advection tapes, |
107 |
|
by using a 2D tape independent of the generic_advdiff ones, |
108 |
|
and setting GAD_AREA=1 etc. rather than GAD_AREA=101 etc. |
109 |
|
|
110 |
|
checkpoint62q (2010/12/29) |
111 |
|
o model/src: |
112 |
|
- check horizontal grid-spacing for unset or zero/negative values. |
113 |
|
- change AD test hs94.1x64x5 to be truly a 2-D set-up. |
114 |
|
o pkg/flt: |
115 |
|
- use (recent) mdsio S/R MDS_READVEC_LOC instead of local FLT_MDSREADVECTOR |
116 |
|
- precision of input and output files set according to readBinaryPrec |
117 |
|
and writeBinaryPrec (previously always 64.b), pickup remains at 64 bits. |
118 |
|
- initial float position from tiled file was not converted to index space |
119 |
|
(looks like a bug): fixed to make it similar to initial pos. global file. |
120 |
|
o global_ocean.cs32x15: |
121 |
|
change SIZE.h of AD set-up to get same tiling as with MPI. |
122 |
|
Update output_adm, output_adm.thsice (pass@14) & output_adm.seaice (fail@11) |
123 |
|
o model/src: |
124 |
|
add flag to control printing of domain fields (bathymetry, hFac ...) in |
125 |
|
ini_mask_etc (call to plot_fieds_xy*). |
126 |
|
o pkg/thsice: |
127 |
|
if useEXF, some forcing fields are not valid in overlap: fixed by computing |
128 |
|
over the interior only + apply EXCH at the end (like with SEAICE advection). |
129 |
|
o pkg/mdsio: |
130 |
|
- add 2 arguments to S/R MDS_PASS_R4/8toRL/S for overlap size of buffer |
131 |
|
to copy to/from, so that it can be used to replace MDS_PASS_WH_R8toRL/RS. |
132 |
|
- change barrier call for safe multi-threads access to 3-D shared buffer. |
133 |
|
- MDS_READ/WRITEVEC_LOC use buffers from MDSIO_BUFF_3D.h (instead of local ones) |
134 |
|
- replace call to MDS_PASS_WH_R4/8toRL with call to MDS_PASS_R4/8toRL and |
135 |
|
remove the 4 S/R MDS_PASS_WH_R4/8toRL/S. |
136 |
|
o pkg/flt: |
137 |
|
- add fourth-order Runge-Kutta integration |
138 |
|
- add basic exch2 support (only 1 facet supported so far!) |
139 |
|
o pkg/mdsio+rw: |
140 |
|
new S/R to read local (or tile independent) vector (read counterpart of |
141 |
|
mds_writevec_loc, and front-end write_glvec_rl/rs). |
142 |
|
o global_ocean.cs32x15: additional input_ad.seaice experiment |
143 |
|
that uses pkg/seaice rather than pkg/thsice. |
144 |
|
(using multidim advection for seaice) |
145 |
|
o towards more F95 syntax for array specification in namelist: |
146 |
|
- change "data.diagnostics" (data.ptracers was changed before checkpoint62p) |
147 |
|
of all verification experiments. |
148 |
|
e.g.: line: fields(1,3)='ETAN ','ETANSQ ', |
149 |
|
was changed to: fields(1:2,3)='ETAN ','ETANSQ ', |
150 |
|
- finish adding "-DNML_EXTENDED_F77" to DEFINES list in pgf77 and g77 optfiles |
151 |
|
o global_ocean.cs32x15: additional input.seaice experiment |
152 |
|
that uses pkg/seaice rather than pkg/thsice. |
153 |
|
|
154 |
|
checkpoint62p (2010/12/17) |
155 |
|
o pkg/thsice: rename (ad tape index) iicekey as ticekey, and move it |
156 |
|
to THSICE_SIZE.h to avoid conflict with pkg/seaice. |
157 |
|
o pkg/seaice: add seaice_diffusion.f seaice_map_thsice.f to adjoint. |
158 |
|
allow for use of multim. advection in seaice adjoint. |
159 |
|
o pkg/seaice: add diagnostics for snow precipitation and sublimation flux |
160 |
|
- first attempt to close budgets by taking into account the freshwater |
161 |
|
flux implied by the sublimation of snow and ice. So far only the |
162 |
|
volume budget is closed, turn on with soon-to-be-retired-again CPP-Flag |
163 |
|
SEAICE_ADD_SUBLIMATION_TO_FWBUDGET |
164 |
|
o eesupp/src: |
165 |
|
new S/R with new option (NML_EXTENDED_F77) to change array specification |
166 |
|
from F95 standard to commonly accepted extended F77 form. |
167 |
|
This would allow to use F95 syntax in namelist (needed with gfortran 4.4.5) |
168 |
|
and to revert back to the original syntax (with -DNML_EXTENDED_F77) |
169 |
|
for less tolerant f77 compiler (e.g., pgf77, g77). |
170 |
|
o globalFiles: |
171 |
|
commented out in parameter file "data" since it's not safe with MPI |
172 |
|
(e.g., wrong on aces); keep it if useSingleCpuIO=T (but not doing much |
173 |
|
in this case); no longer commented out in restart test (tst_2+2). |
174 |
|
o add adTapeDir to specify a special directory where adjoint tapes are |
175 |
|
written/read (adread_adwrite.F). adTapeDir is specified in data/PARM05 |
176 |
|
and cannot be used together with mdsioLocalDir. |
177 |
|
o nesting pkgs: |
178 |
|
- packages_init_variables : put call to OBCS_INIT_VARIABLES in last position |
179 |
|
- update Gianmaria's Nesting pkgs (from Contrib/nesting_sannino) |
180 |
|
- add parameter files + utils dir + output from short run on beagle. |
181 |
|
o pkg/seaice: |
182 |
|
fix seaice_growth.F store directives; update results of exp. lab_sea.ad |
183 |
|
o pkg/seaice: explicitly store tsurfloc in seaice_solve4temp.F to avoid |
184 |
|
unnecessary copying in adjoint code, requires new parameter NMAX_ITER |
185 |
|
|
186 |
|
checkpoint62o (2010/11/25) |
187 |
|
o pkg/exf: |
188 |
|
- change CPP option EXF_VERBOSE to run-time logical param exf_verbose. |
189 |
|
o pkg/seaice: |
190 |
|
- seaice_ocean_stress: split a loop for better vectorization of the |
191 |
|
adjoint code |
192 |
|
- seaice_growth.F: fix bug in conservation of freshwater connected to |
193 |
|
capping of heff, put contribution into d_HEFFbyNEG |
194 |
|
- replace irritating parameters SEAICE_latentWater/Ice and SEAICE_sensHeat |
195 |
|
by something more sensible (parameters that are what their name implies) |
196 |
|
- change some defaults, so that by default exf-parameters are used for |
197 |
|
things like rhoAir, cpAir,latent/sensible heat parameters, in order |
198 |
|
to reproduce the old results, many data.seaice now contain funny values |
199 |
|
for cpAir and latent heat of sublimation |
200 |
|
o packages_readparms.F: move exf_readparms up in line so that |
201 |
|
exf-parameters are visible for other packages (e.g. seaice) |
202 |
o debugMode & debugLevel=2: |
o debugMode & debugLevel=2: |
203 |
- differentiate between debugMode & debugLevel=2: |
- differentiate between debugMode & debugLevel=2: |
204 |
debugMode: controls printing of debug messages (sequence of S/R calls). |
debugMode: controls printing of debug messages (sequence of S/R calls). |