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revision 1.1206 by jahn, Tue Dec 15 17:03:28 2009 UTC revision 1.1220 by jmc, Sat Jan 16 23:17:16 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o cleaning:
8      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
9      - comment out maskH definition (replaced by maskInC)
10    o pkg/monitor:
11      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
12        & mon_calc_stats_rl) to be the RL pendant to mon_printstats_rs & mon_stats_rs.
13    
14    checkpoint62a (2010/01/15)
15    o model/src:
16      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
17    o pkg/diagnostics:
18      - add optional level number diagnostics (i.e., level number to be define
19        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
20      - strictly check for valid parser-code(10) ;
21      - check if adding diag to the list from the right place.
22    o pkg/longstep:
23      - change parameters and fix tracer conservation with rstar/nonlinear free surface
24    o diagnostics:
25     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
26       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
27    o pkg/diagnostics:
28     - Add option for writing vertical integral (sum of selected levels) of an output
29        field instead of writing output field levels. Activate this option on a per
30        output-file basis, by setting the 2nd character of fileflag to 'I'.
31     - Add field-specific information relative to level integral in 3rd postion
32        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
33        vertically (x level-thickness x hFac), "r"=same but without hFac.
34    o do_the_model_io:
35      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
36        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
37        writing pickups and stopping.
38    o pkg/diagnostics (for now, only with mdsio):
39      - write time information to meta file (and modify accordingly rdmds.m) :
40        time-averaged diagnostics output: write starting and ending time of the
41        time-averaging interval ; snap-shot diagnostics output remains unchanged;
42    o pkg/timeave:
43      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
44        always Nr), now assumed to be equal to number of levels of averaged field;
45        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
46    o pkg/sbo:
47      - fix ocean bottom pressure global-average & 2-D time-ave output (was
48        neither initialised nor filled).
49      - add starting iteration in suffix of global-average output file
50        (to avoid over-writing the file after a restart)
51      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
52    o time-average:
53      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
54        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
55         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
56        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
57      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
58      - fix missing accumulation for pkg/opps.
59      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
60         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
61      - fix initialisation of time-ave vars and do only full time-step increment
62        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
63    o pkg/layers:
64      - use standard RW pkg S/R to write the output
65        and remove local write_fld version (which had a problem).
66      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
67      - fix LAYERS_CALC argument list.
68    o pkg/timeave:
69      - store cumulative-time in a simple tiled array (drop the level index)
70      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
71    o pkg/ocn,aim_compon_interf
72      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
73    
74    checkpoint62  (2009/12/23)
75    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
76        (was not previously tested in any other exp.)
77    o pkg/monitor:
78      - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
79        mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
80        (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
81      - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
82      - change del2 calculation.
83      - use interior masks (instead of maskH, <- to be remove).
84      - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
85    o mask & obcs:
86      - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
87      - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
88        (called after packages_init_fixed)
89  o pkg/obcs:  o pkg/obcs:
90    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
91      Fixes bug in obcs+exf with nSx*nSy.GT.1      Fixes bug in obcs+exf with nSx*nSy.GT.1
# Line 16  o nonHydrostatic: Line 98  o nonHydrostatic:
98      (in prep. for new NH free surface form).      (in prep. for new NH free surface form).
99  o pkg/obcs:  o pkg/obcs:
100    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
101  o model/src:  o model/src:
102    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
103    
104  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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