4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
checkpoint62c (2010/03/02) |
8 |
|
o tools/build_options : |
9 |
|
move (some) old optfiles from build_options/ to build_options/unsupported/ |
10 |
|
o model/src and pkg/exf |
11 |
|
surface relaxation -- separating data and data.exf options |
12 |
|
The point is to ensure that we specify the surface relaxation |
13 |
|
either in data or in data.exf (but not half and half) and to |
14 |
|
avoid an accidental relaxation to 0 (which happened if a time |
15 |
|
scale was specified but the file name was left empty) |
16 |
|
o model/src model/inc and pkg/mom_common |
17 |
|
ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity |
18 |
|
=> addition to the viscosity field as computed by others schemes |
19 |
|
o tools/build_options: |
20 |
|
- rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile) |
21 |
|
but keep the former optfile for few weeks for smooth transition |
22 |
|
o pkg/ecco |
23 |
|
- allow user defined cost function contributions |
24 |
|
CPP: ALLOW_USERCOST_CONTRIBUTION |
25 |
|
USAGE: compute contributions in cost_usercost_all.F |
26 |
|
- note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was. |
27 |
|
the two options are complementary. |
28 |
|
o pkg/smooth |
29 |
|
- migration from contrib to the main repository |
30 |
|
|
31 |
|
checkpoint62b (2010/01/26) |
32 |
|
o pkg/monitor: |
33 |
|
- change back mon_printstats_rl.F & mon_stats_rl.F and add a stop |
34 |
|
(in case someone forgot to update customized pieces of code) |
35 |
|
o nonHydrostatic: |
36 |
|
- add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested); |
37 |
|
- add a simple 2-D experiment (short_surf_wave) to test it. |
38 |
|
o pkg/icefront: |
39 |
|
adding the shell of, and the hooks to, a new package that |
40 |
|
will model melting and freezing of vertical glacier ice fronts |
41 |
|
o momentum: |
42 |
|
add diagnostics of momentum tendency from Hydrostatic pressure gradient |
43 |
|
(without surf.pressure term: would need a 2nd filling since implicit term). |
44 |
|
o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace |
45 |
|
two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR |
46 |
|
cannot deal with the former |
47 |
|
o cleaning: |
48 |
|
- remove all (except OpenAD) old TLM output from results_ad dirs. |
49 |
|
- remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R) |
50 |
|
- comment out maskH definition (replaced by maskInC) |
51 |
|
o pkg/monitor: |
52 |
|
- change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl |
53 |
|
& mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs. |
54 |
|
|
55 |
|
checkpoint62a (2010/01/15) |
56 |
|
o model/src: |
57 |
|
- bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4) |
58 |
|
o pkg/diagnostics: |
59 |
|
- add optional level number diagnostics (i.e., level number to be define |
60 |
|
explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X". |
61 |
|
- strictly check for valid parser-code(10) ; |
62 |
|
- check if adding diag to the list from the right place. |
63 |
|
o pkg/longstep: |
64 |
|
- change parameters and fix tracer conservation with rstar/nonlinear free surface |
65 |
|
o diagnostics: |
66 |
|
- in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer |
67 |
|
S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics. |
68 |
|
o pkg/diagnostics: |
69 |
|
- Add option for writing vertical integral (sum of selected levels) of an output |
70 |
|
field instead of writing output field levels. Activate this option on a per |
71 |
|
output-file basis, by setting the 2nd character of fileflag to 'I'. |
72 |
|
- Add field-specific information relative to level integral in 3rd postion |
73 |
|
of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate |
74 |
|
vertically (x level-thickness x hFac), "r"=same but without hFac. |
75 |
|
o do_the_model_io: |
76 |
|
- pass end-of-model-run flag as argument, from forward_step to diagnostics_write: |
77 |
|
in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before |
78 |
|
writing pickups and stopping. |
79 |
|
o pkg/diagnostics (for now, only with mdsio): |
80 |
|
- write time information to meta file (and modify accordingly rdmds.m) : |
81 |
|
time-averaged diagnostics output: write starting and ending time of the |
82 |
|
time-averaging interval ; snap-shot diagnostics output remains unchanged; |
83 |
|
o pkg/timeave: |
84 |
|
- S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously |
85 |
|
always Nr), now assumed to be equal to number of levels of averaged field; |
86 |
|
only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F |
87 |
|
o pkg/sbo: |
88 |
|
- fix ocean bottom pressure global-average & 2-D time-ave output (was |
89 |
|
neither initialised nor filled). |
90 |
|
- add starting iteration in suffix of global-average output file |
91 |
|
(to avoid over-writing the file after a restart) |
92 |
|
- use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb). |
93 |
|
o time-average: |
94 |
|
- use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj) |
95 |
|
(pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf, |
96 |
|
ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice) |
97 |
|
this fix DIC_COST cumulative-time array (previously: bi,bj,k) |
98 |
|
- fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice) |
99 |
|
- fix missing accumulation for pkg/opps. |
100 |
|
- cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0) |
101 |
|
(pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81); |
102 |
|
- fix initialisation of time-ave vars and do only full time-step increment |
103 |
|
(i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81); |
104 |
|
o pkg/layers: |
105 |
|
- use standard RW pkg S/R to write the output |
106 |
|
and remove local write_fld version (which had a problem). |
107 |
|
- use simple cumulative-time array (no level index) to fix time-ave S/R calls. |
108 |
|
- fix LAYERS_CALC argument list. |
109 |
|
o pkg/timeave: |
110 |
|
- store cumulative-time in a simple tiled array (drop the level index) |
111 |
|
- add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array. |
112 |
|
o pkg/ocn,aim_compon_interf |
113 |
|
- changes for multi-threaded coupled run. (tested with ifort-11 on danton) |
114 |
|
|
115 |
|
checkpoint62 (2009/12/23) |
116 |
|
o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output. |
117 |
|
(was not previously tested in any other exp.) |
118 |
|
o pkg/monitor: |
119 |
|
- clean-up _RL/_RS version: add specific S/R for statistics with mask & volume: |
120 |
|
mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one |
121 |
|
(mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics. |
122 |
|
- use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F). |
123 |
|
- change del2 calculation. |
124 |
|
- use interior masks (instead of maskH, <- to be remove). |
125 |
|
- shorter monitor suffix for forcing stats ("forcing" instead of "extforcing"). |
126 |
|
o mask & obcs: |
127 |
|
- define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S). |
128 |
|
- move global area computation from ini_masks_etc.F to ini_linear_phisurf.F |
129 |
|
(called after packages_init_fixed) |
130 |
|
o pkg/obcs: |
131 |
|
- move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once. |
132 |
|
Fixes bug in obcs+exf with nSx*nSy.GT.1 |
133 |
|
- fix multi-tile handling in obcs balance code |
134 |
|
o nonHydrostatic: |
135 |
|
- Implement AB-3 for non-hydrostatic vertical momentum ; |
136 |
|
(change ordering of var. stored in pickup file when using NH) |
137 |
|
- move NH code from solve_for_pressure.F to 2 new S/R: PRE_CG3D & POST_CG3D. |
138 |
|
- add 2-D field to store Hydrostatic Surface Pressure adjusment from cg3d_x |
139 |
|
(in prep. for new NH free surface form). |
140 |
|
o pkg/obcs: |
141 |
|
add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe |
142 |
|
o model/src: |
143 |
|
fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography |
144 |
|
|
145 |
|
checkpoint61z (2009/12/01) |
146 |
|
o nonHydrostatic: |
147 |
|
Fix missing vertical flux of vert. momentum near surface (k=1). This fixes |
148 |
|
a spurious source of energy in simple baroclinic adjusment test case. |
149 |
|
Update all non-hydrostatic exp output. |
150 |
|
o model/src (3-d solver): |
151 |
|
Change again 3-D solver free-surface RHS term when exactConserv=T: |
152 |
|
simpler, consistent with exactConserv, and works with implicDiv2Dflow < 1 |
153 |
|
(which was not the case with previous formulation). |
154 |
|
To recover previous version, just reset "oldFreeSurfTerm" to previous value. |
155 |
|
Affects results of exp. global_ocean.cs32x15.viscA4 & hs94.cs-32x32x5.impIGW. |
156 |
|
o nonHydrostatic: |
157 |
|
- compatible with implicDiv2Dflow < 1 ; + implement implicit factor |
158 |
|
for Non-Hydrostatic pressure gradient (similar to implicSurfPress). |
159 |
|
- change 3-D solver to work with r* (for now, only with linear free-surf.) |
160 |
|
- add few debug diagnostics (cg3d_x, residual) |
161 |
|
o model/src: |
162 |
|
fix missing EmPmR in 3-D solver RHS (was in cg2d_b but missing in cg3d_b). |
163 |
|
update output of exp. global_ocean.cs32x15.viscA4 |
164 |
|
o update output of exp. global_ocean.cs32x15.icedyn after removing |
165 |
|
#define SEAICE_OLD_AND_BAD_DISCRETIZATION from SEAICE_OPTIONS.h |
166 |
|
o add entry points for Gianmaria's Nesting pkgs (from Contrib/nesting_sannino) |
167 |
|
o mnc: add horizontal grid coordinates (XC,YC) and (XG,YG) to netcdf output |
168 |
|
for complex grids, for now only to "state", "adstate", "adexf", "adseaice" |
169 |
|
o model: add Christopher Wolfe's implemetation of the single reduction cg2d |
170 |
|
(d'Azevedo, Eijkhout, and Romine, 1999) with CPP-flag ALLOW_SRCG and |
171 |
|
runtime flag useSRCGSolver. Modify verification experiment global_with_exf |
172 |
|
to test this code |
173 |
|
o pkg/cd_code: |
174 |
|
Change defaut D-grid time-stepping to get the same for D-grid momentum as for |
175 |
|
C-grid momentum. D-grid velocity used to be stepped forward in time with |
176 |
|
Adams-Bashforth only on surface pressure term. Tests show that using AB on |
177 |
|
D-grid coriolis term improves stability (as expected from CD-scheme paper). |
178 |
|
To reproduce old results, add 2 options (in CD_CODE_OPTIONS.h). |
179 |
|
Update results of exp: global_with_exf (x2), ideal_2D_oce, isomip (x2), |
180 |
|
lab_sea (3 Fwd +3 AD), natl_box (x2), tutorial_global_oce_biogeo (Fwd+AD), |
181 |
|
tutorial_global_oce_latlon, tutorial_global_oce_optim & tutorial_tracer_adjsens. |
182 |
|
Keep old results by adding CD_CODE_OPTIONS.h in exp: cfc_example, exp2, |
183 |
|
global_ocean.90x40x15(+AD), global_ocean_ebm(+AD) and OpenAD. |
184 |
|
o pkg/obcs: |
185 |
|
- fix bug in initialisation (broken since Oct 1rst modification) |
186 |
|
for useOBCSprescribe without useEXF. |
187 |
|
|
188 |
|
checkpoint61y (2009/11/15) |
189 |
|
o pkg/seaice |
190 |
|
- change (once again) the discretization for the evp solver: rather than |
191 |
|
squaring the averages of strain rates, average the squares to give |
192 |
|
a better approximation to VP behavior (in simple test); this breaks |
193 |
|
verification experiments that use EVP (lab_sea and lab_sea.hb87) |
194 |
|
--> update outputs |
195 |
|
o add CPP-flag (in mom_calc_visc.F) and TAF directive (in gmredi_slope_limit) |
196 |
|
to improve vectorization of adjoint code on TARGET_NEC_SX |
197 |
|
o verification/vermix: |
198 |
|
- change vermix to a more "classical" 1d column with high vertical |
199 |
|
resolution, seasonal heat flux forcing and constant wind forcing |
200 |
|
--> update outputs |
201 |
|
o pkg/seaice |
202 |
|
- fix diagnostics of principal stress components for EVP |
203 |
|
- add optional diagnostics of non-linear convergence for LSOR solver |
204 |
|
- make maximum zeta a runtime parameter |
205 |
|
o model/src (3-d solver): |
206 |
|
Undo modif from Dec 12, 2005 (solve_for_pressure.F cvs version v.49), |
207 |
|
which consisted in removing the Surf. Non-Hydrostatic pressure from the |
208 |
|
whole column and adding it to Eta (inspired from Casualli, 1999): |
209 |
|
Only affects 3-D solver initial guess and only if using ExactConserv, |
210 |
|
but tests did show a degradation of solver convergence. For this reason, |
211 |
|
decide to disable this piece of code. |
212 |
|
to recover previous version, just set zeroPsNH = exactConserv (line 78). |
213 |
|
Update output of exp. global_ocean.cs32x15.viscA4 & hs94.cs-32x32x5.impIGW |
214 |
|
o pkg/ggl90: |
215 |
|
- fix previous modif (unfortunatly has not been documented here). |
216 |
|
o pkg/seaice/autodiff: |
217 |
|
- add CPP flag to include clipping of zeta in EVP code; |
218 |
|
although clipping of zeta is not necessary for EVP and not recommended |
219 |
|
it was done by default, now clipping is disabled by default |
220 |
|
- modify computation and store zetaC/Z in seaice_evp for TAF |
221 |
|
- add CPP-flag SEAICE_ALLOW_CLIPVELS (undefined by default) |
222 |
|
- change seaice_calc_viscosities/strainrates for better |
223 |
|
vectorization after AD by TAF |
224 |
|
- rearrange common blocks in SEAICE.h once again for easier dumps of |
225 |
|
adjoint output, adjust adcommon.h and g_common.h |
226 |
|
- change flux form of default advection scheme for better vectorization |
227 |
|
of adjoint code |
228 |
|
- modify lab_sea/input.lsr to test the flux form of default advection |
229 |
|
scheme |
230 |
|
o autodiff: fix seaice fields in g_common.h (left over from 3 to 1 level |
231 |
|
transition in checkpoint61r) |
232 |
|
|
233 |
|
checkpoint61x (2009/10/19) |
234 |
|
o adjoint: adding two new verification experiments |
235 |
|
* tutorial_global_biogeo: an online dic sensitivity experiment |
236 |
|
(work with G. Forget) |
237 |
|
* tutorial_dic_adjoffline: an offline dic sensitivity experiment |
238 |
|
(an update of the Dutkiewicz et al., 2006 paper) |
239 |
|
Both use the same CO2FLUX cost function, but different controls |
240 |
|
Gradient checks look good, but some recomp. could still be traightened out |
241 |
|
Should add xx_dic control variable to test at some point |
242 |
|
o model/src: |
243 |
|
add run-time parameters to check and/or mask initial Temp & Salt |
244 |
|
o pkg/ptracers: |
245 |
|
apply zonal filter (if used) to all passive tracers |
246 |
|
|
247 |
|
checkpoint61w (2009/10/12) |
248 |
|
o adjoint: |
249 |
|
* update and finish work on adjoint of dic package (G. Forget) |
250 |
|
* start adjoint of offline package |
251 |
|
* bug fix for cube-sphere TLM code (active_file_g.F) |
252 |
|
o tutorial_global_oce_optim: |
253 |
|
now tested with 4 tiles (change data.grdchk and update output_adm.txt) |
254 |
|
and add SIZE.h_mpi for MPI testing |
255 |
|
o pkg autodiff |
256 |
|
- fix bug in autodiff_restore |
257 |
|
- make genmake2 remove comments and empty lines from ad_input_code.f in |
258 |
|
order to reduce file size (new script file remove_comments_sed) |
259 |
|
o allows to specify vertical profile of vertical viscosity (viscArNr) |
260 |
|
o pkg autodiff |
261 |
|
autodiff_ini_model_io: comment out writing of grid information to netcdf |
262 |
|
files, because at this time the grid fields are a bunch of zeros |
263 |
|
(this is analogous to ini_mnc_vars.F) |
264 |
|
o pkg seaice/autodiff: |
265 |
|
left-over from removing the 3-time-level fields: |
266 |
|
- small rearrangement of common blocks (SEAICE.h) |
267 |
|
- fix field declaration in order to get meaningful output in |
268 |
|
adseaice.*.nc (adcommon.h) |
269 |
|
o pkg obcs: |
270 |
|
- go through NH code only if nonHydrostatic=T |
271 |
|
- fix restart for Orlanski (Hydrostatic; still to fix NH+Orlanski restart) |
272 |
|
- move call to OBCS_CALC before SEAICE_MODEL which needs seaice-obc fields |
273 |
|
=> Update output of experiment seaice_obcs |
274 |
|
- useOBCSbalance: code is wrong with multi-tile / proc: add a stop. |
275 |
|
- fix NH+Orlanski restart (add wvel OBC value in pickup file) |
276 |
|
- fix restart for useOBCSprescribe + useEXF |
277 |
|
o pkg ctrl |
278 |
|
- make obcs as control parameter work also with useSingleCPUio |
279 |
|
- replace a few sny and snx by Ny and Nx to be consistent with |
280 |
|
ctrl_set_globfld_x/yz.F |
281 |
|
o pkg seaice |
282 |
|
- re-introduce global field frWtrAtm for the case of |
283 |
|
ALLOW_MEAN_SFLUX_COST_CONTRIBUTION defined (SEAICE.h, seaice_growth.F) |
284 |
|
- catch the case of an empty filename in seaice_cost_init_fixed.F |
285 |
|
o pkg ecco: |
286 |
|
- small bug fixes in the_main_loop |
287 |
|
. fix order of monitor arguments |
288 |
|
. change SEAICE_MULTILEVEL to SEAICE_MULTICATEGORY |
289 |
|
. move include DYNVARS.h up outside the ALLOW_AUTODIFF_TAMC block so |
290 |
|
that ALLOW_ECCO_FORWARD_RUN works with NONLIN_FRSURF |
291 |
|
- replace cos(yc*deg2rad) by _rA in cost_mean_heat/saltflux.F, fix the |
292 |
|
imbalance diagnostics for wmean_h/sflux = 0 |
293 |
|
- add actual values to f_obcsn/s/w/e in ecco_cost_final.F |
294 |
|
- catch the case of empty filenames in ecco_cost_init_fixed.F |
295 |
|
and ecco_readparms.F |
296 |
|
- fix the logic of wsalt=0.and.wsalt2=0 to wsalt=0.or.wsalt2=0 (and theta) |
297 |
|
to make this statement meaningfull in ecco_cost_weights.F |
298 |
|
o pkg zonal_filt: |
299 |
|
- change ZONAL_FILTER S/R interface (allows to filter 2-D fields) |
300 |
|
- when using rStar, filter uVel*hFacW instead of uVel |
301 |
|
(tested without topography: fix a Pb of growing instability with NLFS) |
302 |
|
o pkg/aim/thsice: |
303 |
|
-Add capacity to read a Q-Flux to be applied in slab-mixed layer thsice_slab_ocean.F |
304 |
|
(works as SST restoring) |
305 |
|
o pkg/thsice: |
306 |
|
-add specific parameter for salt restoring in slab mixed-layer |
307 |
|
(by default equal to the temperature restoring) |
308 |
|
|
309 |
|
checkpoint61v (2009/09/21) |
310 |
|
o pkg/kpp: |
311 |
|
-add double diffusive contributions as a hack, turned off by default |
312 |
|
for now, and the code can be excluded with a CPP-flag |
313 |
|
EXCLUDE_KPP_DOUBLEDIFF just as EXCLUDE_KPP_SHEAR_MIX |
314 |
|
-add a verification experiments to "vermix" to test this code |
315 |
|
o pkg/mom_common: |
316 |
|
Move computation of length scales to mom_init_fixed.F (avoid recomputation |
317 |
|
at each time-steps*levels). |
318 |
|
o pkg/layers: |
319 |
|
Created a new package for computing volume fluxes in temperature or |
320 |
|
[not yet implemented] density layers, e.g. for calculating residual |
321 |
|
overturning circulations. |
322 |
|
o pkg/diagnostics: |
323 |
|
implement a RS type version for the set of DIAGNOSTICS-FILL subroutines |
324 |
|
o fix few RS/RL type mismatch (check with ifort 11.1 "-warn all" option) |
325 |
|
o pkg/mdsio (& pkg/rw): rework high level S/R interface: |
326 |
|
To avoid mixing type (RS/RL) of input/output array argument, |
327 |
|
replace single mixed-type array with a pair from each type (RS/RL). |
328 |
|
o setting pickupSuff force to start from a pickup (even if nIter0=0): this |
329 |
|
is now implemented for all pkgs (previously only done for the main pickup) |
330 |
|
|
331 |
|
checkpoint61u (2009/08/25) |
332 |
|
o pkg/obcs: |
333 |
|
- change OB?eta from _RS to _RL and put them into a separate commen block |
334 |
|
- add code to read OB?eta from a file via obcs_prescribe_read: the code |
335 |
|
compiles and does not destroy any other experiments, the data is read |
336 |
|
properly, but the code is not tested in actual applications |
337 |
|
o ini_mnc_vars.F: if available (ALLOW_CAL), use startTime_1 and 2 to |
338 |
|
create a meaningful unit attribute for the time coordinate variable |
339 |
|
o pkg/ebm: add plenty of missing "_d 0" ; |
340 |
|
update results of experiment global_ocean_ebm (fwd + adjoint tests) |
341 |
|
Notes: several pieces of code only works for (very) specific set up |
342 |
|
(domain size, lat range, etc ...); should be documented & stop if one |
343 |
|
of those assumptions is not meet. |
344 |
|
o pkg/seaice: add missing "_d 0" in HSNOW initialisation |
345 |
|
update results of experiments: lab_sea (3 fwd tests + 2 adjoint tests) |
346 |
|
and offline_exf_seaice (seaicetd + adjoint). |
347 |
|
o add missing "_d 0" in ShortWave flux penetration (S/R SWFRAC): |
348 |
|
update results of experiments: lab_sea (4 fwd tests + 3 adjoint), |
349 |
|
seaice_obcs, global_ocean.cs32x15 (icedyn & thsice) and natl_box (x2). |
350 |
|
o few changes to pass when compiling with strick checking of arguments |
351 |
|
across S/R (allow to find few bugs in S/R calls). |
352 |
|
o pkg/seaice: |
353 |
|
- seaice_evp: move if-statement out of loop (TEM) at the cost of 11 new |
354 |
|
2d-fields, for slightly better performance |
355 |
|
|
356 |
|
checkpoint61t (2009/07/22) |
357 |
|
o pkg/seaice: |
358 |
|
- remove unused variables in seaice_evp |
359 |
|
- reduce number of SQRT in seaice_evp and seaice_calc_viscosities |
360 |
|
o eeset_parms.F, open_copy_data_file.F & ini_parms.F: |
361 |
|
named file replacing SCRATCH files (for TARGET_BGL & TARGET_CRAYXT): |
362 |
|
each processor opens a different file (a fix from Matt). |
363 |
|
o cg2d: |
364 |
|
use simple EXCH (overlap size = 1 and ignore corners), like in cg3d.F : |
365 |
|
this reduces number of EXCH calls by 2 when using exch2. |
366 |
|
For now, keep previous size array for gc2d_nsa.F to avoid Pb with store |
367 |
|
directives and missing simple EXCH (exch_s3d_rx) adjoint code. |
368 |
|
o pkg/thsice: |
369 |
|
add code for Near Infra-Red albedo (from Jeff) |
370 |
|
(turned on with run-time flag: thSIce_calc_albNIR, in data.ice). |
371 |
|
o ini_model_io: |
372 |
|
move (from packages_readparms.F & initialise_fixed.F) to ini_model_io.F |
373 |
|
MNC & MONITOR initialisation calls; move MNC calls from {pkg}_readparms.F |
374 |
|
to {pkg}_init_fixed.F for {pkg}= kpp, seaice & shelfice. |
375 |
|
|
376 |
|
checkpoint61s (2009/06/30) |
377 |
|
o pkg/exch2 (exch2_rxN_cube*): |
378 |
|
remove last BARRIER (no need to synchronise after getting data from shared |
379 |
|
buffer (get) as long as any change to buffer (put,recv) is between BARRIER) |
380 |
|
o change tiling of natl_box (from 2 to 4 tiles) to get it tested with MPI+MTH |
381 |
|
and generate new output (for the 2 tests) using default rotationPeriod. |
382 |
|
o pkg/exch2: |
383 |
|
- always call exch2_*_cube, not exch-1 anymore, if useCubedSphereExchange=F |
384 |
|
(was already the case with AUTODIFF_EXCH2 defined) |
385 |
|
- add bj in exch2 arrays and S/R. |
386 |
|
- can now use pkg/exch2 for regular (non CS) set-up; switch test experiment |
387 |
|
MLAdjust to exch2 (identical results except with MPI -> truncation diff); |
388 |
|
o add pkg/longstep for ptracer timestep a multiple of U/V/T/S timestep |
389 |
|
- adds deltaT argument to the subroutines TIMESTEP_TRACER DWNSLP_APPLY |
390 |
|
GAD_ADVECTION GAD_CALC_RHS GAD_IMPLICIT_R GAD_SOM_ADVECT |
391 |
|
- verification experiment natl_box.longstep |
392 |
|
o build_options: ifort+mpi_aces optfile (following Constantinos advise): |
393 |
|
allow different versions of ifort (8 or 9) and different versions |
394 |
|
of mpi (mpich or mpich2) to be used with the same optfile. |
395 |
|
requires to load a netcdf module and set MPI_INC_DIR (see comments inside |
396 |
|
optfile). Change testing scripts (example_scripts/ACESgrid) accordingly. |
397 |
|
o pkg/seaice: |
398 |
|
fix previous modif (3-level field removed) for old-pickup reading |
399 |
|
|
400 |
|
checkpoint61r (2009/06/25) |
401 |
|
o pkg/seaice: |
402 |
|
- clean up the 3-time levels of UICE,VICE,HEFF,AREA in three steps: |
403 |
|
1. introduce fields for time step (N-1) |
404 |
|
2. do not use levels 2 and 3 anymore (but keep them) |
405 |
|
3. replace 3D versions of UICE,VICE,HEFF,AREA by 2D versions. This |
406 |
|
includes changes to pkg/thsice/thsice_get_velocity.F, |
407 |
|
model/src/external_forcing_surf.F, pkg/obcs/obcs_apply_seaice.F, and |
408 |
|
pkg/obcs/obcs_apply_uvice.F. |
409 |
|
- completely remove code for leap-frog time stepping for second order |
410 |
|
advection |
411 |
|
- adjusted adjoint accordingly; |
412 |
|
gradient checks have improved by an order of magnitude! |
413 |
|
|
414 |
|
checkpoint61q (2009/06/22) |
415 |
|
o pkg/seaice: fix bug in free slip boundary conditons for LSOR solver |
416 |
|
- the boundary conditions along open boundaries are unclear, because the |
417 |
|
associated masks are set to zero and are thus treated as closed when |
418 |
|
applying the slip-boundary conditions. |
419 |
|
- move initialisation of grid variables from seaice_init_varia to _fixed |
420 |
|
o adding doc/diags_changes.txt |
421 |
|
o model/src: |
422 |
|
do_the_model_io: rename few pkg S/R which are called from do_the_model_io, |
423 |
|
to avoid "_diags" naming if no relation to pkg/diagnostics. |
424 |
|
ini_theta,ini_salt: fix (at least compile the code) reading from NetCDF |
425 |
|
file and only call PLOT_FIELD_XYZ if debugMode=T. |
426 |
|
remove few PLOT_FIELD_XY calls outside initialisation. |
427 |
|
remove few unnecessary BARRIER. |
428 |
|
o pkg/salt_plume: add SaltPlumeSouthernOcean to allow disabling |
429 |
|
of salt_plume package in Southern Ocean |
430 |
|
o pkg/thsice: |
431 |
|
- fix hOceMxL in overlap (needed for sea-ice advection); |
432 |
|
update output of experiment global_ocean.cs32x15.icedyn. |
433 |
|
o pkg/seaice: |
434 |
|
- make the (placeholder-)tracer IceAge a little more meaningful |
435 |
|
by avoiding ridging of age due to convergent ice flow |
436 |
|
- add diagnostics for surface temperature, atmospheric and oceanic |
437 |
|
heat flux, and atmospheric and oceanic ice growth |
438 |
|
|
439 |
|
checkpoint61p (2009/06/10) |
440 |
|
o eesupp (global_max & global_sum): |
441 |
|
- add one more element to buffer (start at index 0) for GL_MAX/SUM output; |
442 |
|
- remove starting & endding barrier (no longer needed) |
443 |
|
o pkg/mdsio, writelocal: |
444 |
|
works also in multi-threaded when LOCBIN_IO_THREAD_SAFE is undefined |
445 |
|
(remove the STOP): uses shared buffer IO to store data from all threads |
446 |
|
and then let master-thread write nThreads tiles. |
447 |
|
o pkg/mdsio (read/write field): |
448 |
|
- tiled IO done in 1 piece (all levels at a time); |
449 |
|
- new header file "MDSIO_BUFF_3D.h" with 3-D buffers. |
450 |
|
- multi-threaded: allow to read/write local (non-shared) array |
451 |
|
(was already working with singleCpuIO ; now works also without); |
452 |
|
=> no longer needs barrier call after reading a file (added inside |
453 |
|
mds_read/write field). |
454 |
|
- move barrier calls outside gather/scatter_2d to mds_read/write_field |
455 |
|
o pkg/obcs/exf |
456 |
|
- exf_getffieldrec.F: add a few ". _d 0" and |
457 |
|
add code to catch the case fldperiod = 0. |
458 |
|
- obcs_precribe_read.F: change if statements so that they match |
459 |
|
the variable type (_RL) |
460 |
|
- add a separate exf_iprec_obcs to exf_set_obcs (by default equal to |
461 |
|
exf_iprec) as part of namelist EXF_NML_01 |
462 |
|
o pkg/mdsio: |
463 |
|
- read/write tiled (local) files: read/write 1-level tile chunk at a time |
464 |
|
(instead of segment of length sNx); expected to speed up tiled IO. |
465 |
|
o pkg/exch2: |
466 |
|
- take buffer copy from/to array out of S/R exch2_send/recv into new |
467 |
|
S/R exch2_put/get ; Exch of local variable now works with MPI+MTH |
468 |
|
(tested by removing commom block statement in SOLVE_FOR_PRESSURE.h). |
469 |
|
- ad version of send/recv no longer needed (but needs exch2_ad_put/ad_get) |
470 |
|
- simplify argument list of S/R exch2_get_uv_bounds and exch2_get_scal_bounds |
471 |
|
(which replaces exch2_get_recv_bounds & exch2_get_send_bounds) by |
472 |
|
including Topology header file (and common blocks). |
473 |
|
- implement EXCH_IGNORE_CORNERS in scalar exchange (rx1); |
474 |
|
remove 2nd exch call in exch2_s3d_rx (no longer needed). |
475 |
|
- document S/R arg. list (+ update some comments) |
476 |
|
o pkg/seaice: |
477 |
|
- added SEAICE_CLIM_AIR code, which permits modulation of surface air |
478 |
|
temperature and humidity over sea ice based on climatological values. |
479 |
|
- clean up computation of Hibler+Bryan (1987) stress coupling for the case |
480 |
|
of LSR (this change is expected to change the results slightly because now |
481 |
|
it uses slightly difference moduli from the second last LSR solution, but |
482 |
|
that is more consistent with the stress computations; this part of the code |
483 |
|
is not tested in the verification experiments) |
484 |
|
- fix diagnostics for flux of ice in case of B-grid |
485 |
|
- turn strain rates eij and press into global fields within global |
486 |
|
common block in SEAICE.h for more straighforward diagnostics |
487 |
|
- fix diagnostics for principal stress components, press, zeta, eta |
488 |
|
to give something meaning full |
489 |
|
o change tiling of global_ocean.cs32x15 (12 tiles, 32x16) and generate |
490 |
|
new output (all 4 tests) using default rotationPeriod. |
491 |
|
o pkg KPP: |
492 |
|
- add flag (LimitHblStable) to avoid limiting BL depth under stable conditions |
493 |
|
- fix vertical indices in RI_IWMIX (match between KPP grid from 0 to Nr+1 |
494 |
|
and normal grid from 1 to Nr) |
495 |
|
o Fix computations of L4rdt in mom_calc_visc.F |
496 |
|
o eesupp: |
497 |
|
new S/R ALL_PROC_DIE (like EEDIE, without irrelevant threads err msg): |
498 |
|
should be called before a "stop" if we know that all process are going |
499 |
|
to stop; if one Proc does call this S/R, will hang in MPI_FINALISE. |
500 |
|
|
501 |
|
checkpoint61o (2009/05/26) |
502 |
|
o pkg/exch2: change check_depths to issue just a warning (instead of error+stop) |
503 |
|
o model/src/ini_curvilinear_grid.F: |
504 |
|
compute angleSin/CosC when they are not read from a file |
505 |
|
o pkg/seaice: |
506 |
|
add pseudo time stepping for LSOR |
507 |
|
o pkg/exch2: |
508 |
|
temporary fix for exch2_s3d_rx; update results of exp. hs94.cs-32x32x5.impIGW |
509 |
|
o pkg/seaice: |
510 |
|
Adding separate sea ice albedo, drag coefficients, and HO in Southern |
511 |
|
Ocean from those in Arctic Ocean. See *_south in SEAICE_PARAMS.h |
512 |
|
o SingleCpuIO: |
513 |
|
fix bug put before chkp61n (May 11), when more than 2 MPI cpu are used. |
514 |
|
o pkg/seaice: |
515 |
|
put exchanged variable in (local) common block for MPI+Multi-Threads |
516 |
|
to work (necessary with exch1, and for now with exch2 too). |
517 |
|
o verification: to get more experiments tested with mpi, mth and mpi+mth, |
518 |
|
change tiling of: |
519 |
|
aim.5l_Equatorial_Channel, aim.5l_LatLon, dome, exp4, global_ocean.90x40x15, |
520 |
|
hs94.cs-32x32x5, MLAdjust, offline_exf_seaice & tutorial_plume_on_slope |
521 |
|
update output of exp: |
522 |
|
exp4, global_ocean.90x40x15(+.dwslp), MLAdjust(all 5), |
523 |
|
tutorial_plume_on_slope and hs94.cs-32x32x5 (use default rotationPeriod) |
524 |
|
+ ideal_2D_ocean: use default rotation period + test Global_Sum_SINGLECPU |
525 |
|
(note: output.txt generated on faulks using only 1 tile) |
526 |
|
o eesupp & mdsio (SingleCpuIO): |
527 |
|
- remove MISSING_TILE_IO (from MDSIO_OPTIONS.h), replaced by run-time |
528 |
|
parameter "W2_useE2ioLayOut" (read from file "data.exch2"). |
529 |
|
Note: was not effective for globalFile & useSingleCpuIO=F; now fixed. |
530 |
|
- move MDSIO_SCPU.h (pkg/mdsio) to EEBUFF_SCPU.h (eesupp/inc). |
531 |
|
- fix GLOBAL_SUM_SINGLECPU when using Exch2; re-use same buffers and same |
532 |
|
gather/scatter S/R as with SingleCpuIO (=> 1 less 2D global RL array). |
533 |
|
o pkg/exch2: |
534 |
|
- new code to set-up W2-Exch2 topology (replace matlab-topology-generator): |
535 |
|
read parameter file "data.exch2" if it exists; otherwise try default regular |
536 |
|
cube without blank-tile; new header file "W2_EXCH2_SIZE.h"; |
537 |
|
- update matlab-topology-generator (exch2_setup_cs6_print.m) to be compatible |
538 |
|
with new code (not to be used, just as a backup solution). |
539 |
|
- add examples (e.g., for lat-lon-cap_120) of parameter file "data.exch2" |
540 |
|
in utils/exch2/input. |
541 |
|
|
542 |
|
checkpoint61n (2009/05/12) |
543 |
|
o eesupp & mdsio (SingleCpuIO): |
544 |
|
- move mapping to global io-buffer inside gather_2d/scater_2d: this save |
545 |
|
memory (1 less 2D global RL array); skip 1 buffer copy; and only send/ |
546 |
|
receive real*4 array (instead of real*8) to read/write 32.bit files. |
547 |
|
(new template for gather_2d/scater_2d, new set of S/R MDS_PASS_R4,8toRL,S |
548 |
|
and remove new mapping S/R) |
549 |
|
o pkg/mdsio: in preparation for topology-generator within pkg/exch2: |
550 |
|
- Change declaration of SingleCpuIO buffer, reduced to only 1 dim.: |
551 |
|
xyBuffer_size, which is set to W2_ioBufferSize from W2_EXCH2_PARAMS.h |
552 |
|
when using exch2. Add S/R to map global io-buffer to global model array. |
553 |
|
- uses exch2_global_Nx,y instead of exch2_domain_nxt,nyt. |
554 |
|
|
555 |
|
checkpoint61m (2009/04/29) |
556 |
|
o write_utils : change WRITE_1D_R8 to WRITE_1D_RL |
557 |
|
and add 3 other S/R for other types (R4,R8,RS). |
558 |
|
Change calls to WRITE_0D/1D_R[4,8,S,L] to match the type of argument. |
559 |
|
o eesupp/inc/CPP_EEMACROS.h (EXCH & GLOBAL_SUM/MAX macros): |
560 |
|
- ensure suffix (_R4,_R8,_RS,_RL) correspondance between macro and S/R ; |
561 |
|
- reduce number of macro definitions (keep only those which are used); |
562 |
|
can always call directly the corrresponding S/R if needed. |
563 |
|
- everywhere in the code: change macros (EXCH & GLOBAL_SUM/MAX) suffix |
564 |
|
_R4/_R8 to _RS/_RL when applied to _RS/_RL variable. |
565 |
|
Fixed wrong type of arg in: |
566 |
|
atm2d/put_ocnvars.F cheapaml/cheapaml.F ocn_compon_interf/ocn_apply_import.F |
567 |
|
ctrl/ctrl_map_ini_ecco.F seaice/seaice_do_diags.F seaice/seaice_model.F |
568 |
|
To fix: global_sum of var in common block is wrong (multi-threaded) in: |
569 |
|
dic/dic_atmos.F ebm/ebm_area_t.F ebm/ebm_zonalmean.F sbo/sbo_calc.F |
570 |
|
To fix: aim_v23/aim_do_co2.F (BARRIER & GLOBAL_SUM within bi,bj loops) |
571 |
|
o adjustment.cs-32x32x1: test "blank tiles" when compiling with mpi; 2nd |
572 |
|
"nlfs" mpi test is going to stop when checking for unconnected tile egdes. |
573 |
|
o eesupp/src: new S/R to stop everyone when 1 (or more) Proc. find an error |
574 |
|
o pkg/exch2: new S/R EXCH2_CHECK_DEPTHS to check that unconnected tile |
575 |
|
edges are closed (zero depth); might happen with "blank tiles"; |
576 |
|
for now, disabled if using OBCS. |
577 |
|
o tools/gemake2: delete modifs from March 27-29 2009 (with option "-mpi": |
578 |
|
link *_mpi files from "MODS" dir) to return to a strait-forward behavior. |
579 |
|
o move read_write.F to write_utils.F ; new parameter (maxLengthPrt1D) |
580 |
|
to reduce length of 1.D array print in STDOUT. |
581 |
|
o adjustment.cs-32x32x1: changed to oceanic test with 1 continent |
582 |
|
+ use 48 tiles (16x8): this will allow to test "blank tiles". |
583 |
|
o start to test MPI + multi-threaded (change testreport to skip tests |
584 |
|
where number of tiles do not match). |
585 |
|
o genmake2: add option "-omp" to turn on Open-MP ; |
586 |
|
passed to testreport (if using -mth) ; merge few (*+mth) optfiles. |
587 |
|
o pkg/exch2 (+ utils/exch2): ignore blank tiles (instead of removing them) |
588 |
|
and keep the original tile numbering. Note: compatible with old |
589 |
|
W2_EXCH2_TOPOLOGY.h & w2_e2setup.F topology files. |
590 |
|
|
591 |
|
checkpoint61l (2009/04/07) |
592 |
|
o Overlaps had been forgotten in calculating ijk keys : fixed |
593 |
|
o fix cyrus makedepend for gcc 4.4 |
594 |
|
o experiment fizhi-cs-aqualev20: |
595 |
|
switching to new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE) |
596 |
|
and generate new output. Note: new output is much closer to the old |
597 |
|
one (v1.8) generated with pgf77 -O2 on Mar 14 2007 than it is from |
598 |
|
the previous one (v1.9) generated with pgf77 -O0 on Jun 13 2007. |
599 |
|
o pkg/fizhi: |
600 |
|
- change to avoid indices going deliberately over array-bounds |
601 |
|
- remove unnecessary MPI stuff |
602 |
|
- perpetual spring equinox with "#define FIZHI_USE_FIXED_DAY" |
603 |
|
- new version of S/R GETPWHERE available with #define TRY_NEW_GETPWHERE: |
604 |
|
does not go over array-bounds and therefore returns reliable output. |
605 |
|
- in fizhi_driver.F & fizhi_turb.F, fix "get_alarm" calls: |
606 |
|
this S/R has 4 output arguments, which are used inside "get_alarm"; |
607 |
|
when it is called with the same variable "ndum" in place of several |
608 |
|
output arguments, this produces weird side effect inside "get_alarm" |
609 |
|
(e.g., datein=dates(n) is overwritten by timein=times(n) since both |
610 |
|
datein & timein, resp. 2nd and 3rd arg., are pointed to the same "ndum" |
611 |
|
address) and produces error. |
612 |
|
o tools/gemake2: (March 27-29 2009) |
613 |
|
with option "-mpi": link *_mpi files from "MODS" dir (this is what |
614 |
|
testreport does). |
615 |
|
o lab_sea experiment: change from 2x1 tiles to 2x2 tiles and regenerate output |
616 |
|
o pkg/seaice: fix bug in new version of S/R SEAICE_LSR.F: |
617 |
|
update lab_sea.lsr & lab_sea.salt_plume results |
618 |
|
o pkg/seaice: |
619 |
|
Major overhaul of the LSOR solver: change discretization from original |
620 |
|
finite differences to finite volume. The old routine is still in the |
621 |
|
file seaice_lsr.F and can be turned on with the CPP-flag |
622 |
|
SEAICE_OLD_AND_BAD_DISCRETIZATION |
623 |
|
Along with this change, the discretization of the strain rates is changed. |
624 |
|
The same flag turns on the old discretization in seaice_calc_strainrates.F |
625 |
|
All verification experiments with seaice are affected (except for |
626 |
|
seaice_exf_offline); global_ocean.cs32x15/input.icedyn recovers the old |
627 |
|
results by setting the above flag. |
628 |
|
Further changes involve changes in defaults: |
629 |
|
- ALLOW_FLOODING is defined and turned on by default |
630 |
|
- SEAICEadvSnow = .true. is now the default |
631 |
|
- SEAICEadvSalt = .true. is now the default |
632 |
|
- SEAICEadvAge = .true. is now the default |
633 |
|
- SEAICE_clipVelocities = .false. is now the default |
634 |
|
(as per J. Zhang's recommendation) |
635 |
|
- B-grid, and thus not tested: SEAICE_TEST_ICE_STRESS_1/EXPLICIT_SSH_SLOPE |
636 |
|
is defined, SEAICE_TEST_ICE_STRESS_1 is renamed into SEAICE_BICE_STRESS |
637 |
|
- seaice_growth: replace computation of UG by a simple copy from wspeed |
638 |
|
|
639 |
|
checkpoint61k (2009/03/18) |
640 |
|
o pkg/seaice: a few bug fixes mostly concerning the metric terms: |
641 |
|
seaice_lsr: fixed a few metric terms, |
642 |
|
affects lab_sea.lsr, lab_sea.salt_plume, seaice_obcs |
643 |
|
add more debugging diagnostics |
644 |
|
seaice_evp: removed superfluous many metric terms of FV discretization |
645 |
|
of stress divergence |
646 |
|
affects lab_sea, lab_sea.hb87 |
647 |
|
seaice_ocean_stress: removed superfluous many metric terms of FV discretization |
648 |
|
of stress divergence for non-evp solver |
649 |
|
(this part is not tested anywhere) |
650 |
|
seaice_calc_strainrates: fixed a bug in no-slip boundary conditions, |
651 |
|
they were effectively only half slip |
652 |
|
affects lab_sea.hb87 |
653 |
|
updated all relevant verification experiments (except lab_sea//output_adm.txt |
654 |
|
which was left over, but fails at level 7 & 6) |
655 |
|
|
656 |
|
checkpoint61j (2009/03/17) |
657 |
|
o pkg/seaice: turn a few hard wired parameters into run time parameters |
658 |
|
o pkg/seaice/exf/monitor: turn netcdf coordinate variable T into model |
659 |
|
time in seconds as promised by the usints in seaice_monitor and exf_monitor |
660 |
|
o pkg/mnc: fix the coordinate variables for multi-tile curvi-linear grids |
661 |
|
that are not cubed-sphere grids |
662 |
|
o pkg/seaice: fix a bug for the rare case of SEAICE_VECTORIZE_LSR |
663 |
|
o pkg/ctrl: |
664 |
|
fix bug in ctrl_depth_ini.F (EXCH_XYZ was applied to 2-D field xx_r_low) |
665 |
|
o non-hydrostatic (calc_gw.F): |
666 |
|
fix viscA4 on CS-grid + fix diagnostics: Wm_Diss & Wm_Advec |
667 |
|
update output of exp. global_ocean.cs32x15.viscA4 |
668 |
|
o remove backward compatibility for thetaMin,phiMin |
669 |
|
(replaced by xgOrigin,ygOrigin on Jan 27, 2009) |
670 |
|
o pkg/exf: fix a serious bug in exf_set_uv.F: do a rotation of the |
671 |
|
interpolated wind field not only for curvilineargrid=.true., but also |
672 |
|
for a rotated grid (rotateGrid=.true.) |
673 |
|
o pkg/exf: add capability to bypass interpolation for runoff |
674 |
|
by setting yet another CPP-flag |
675 |
|
o eesupp/src, B-grid exchange: |
676 |
|
add simple (6 tiles, non MPI) CS exch + standard interface S/R. |
677 |
|
o autodiff |
678 |
|
new CPP option ALLOW_TAMC_SINGLEPREC_COMLEV |
679 |
|
allows to switch to single-prec common blocks; |
680 |
|
corresponding switch occurs in tamc.h, integer isbyte |
681 |
|
TAF store directivs "byte" and "kind" seem equivalent; |
682 |
|
Most tamc.h have been updated correspondingly. |
683 |
|
|
684 |
|
checkpoint61i (2009/02/13) |
685 |
|
o autodiff: |
686 |
|
fix autodiff_sore/_restore indices for obcs |
687 |
|
(spotted by I. Hoteit, M. Mazloff) |
688 |
|
o pkg/autodiff, pkg/ctrl: |
689 |
|
Add flag to reduce all tapelev I/O to single-prec. |
690 |
|
In data.ctrl set |
691 |
|
doSinglePrecTapelev = .TRUE. |
692 |
|
o model/src/ini_curvilinear_grid.F, new grid-file format without EXCH2: |
693 |
|
check in hack for SX8 compiler (for dxV, dyU); remove it afterwards. |
694 |
|
o pkg/shelfice: fix bug with SHELFICEconserve flag, prepare for |
695 |
|
real fresh water flux (not yet) |
696 |
|
o pkg/mdsio & rw: |
697 |
|
- add argument & option to S/R MDS_WRITEVEC_LOC (avoid Open/Close & write-meta) |
698 |
|
- add simple interface S/R to MDS_WRITEVEC_LOC in pkg/rw: WRITE_GLVEC_RX. |
699 |
|
o pkg/flt: |
700 |
|
- replace FLT_INIT by 3-steps standard initialization S/R: readparms, |
701 |
|
init_fixed & ini_varia. |
702 |
|
- clean-up & simplify linear interpolation S/R: |
703 |
|
move flt_bilinear.F -> flt_interp_linear.F ; add arg. myThid. |
704 |
|
- fix some indices (mainly vertical index) ; add IMPLICIT NONE. |
705 |
|
- more efficient I/O, using new options of MDS_WRITEVEC_LOC S/R. |
706 |
|
- add vert. coordinate & horiz. indices to output files. |
707 |
|
- change vertical position in initial condition, from index to depth [m]. |
708 |
|
- store horizontal (decimal) indices i,j in common block (instead of coord. x,y) |
709 |
|
(easier to get to a curvilinear grid) ; delX,delY no longer used. |
710 |
|
o pkg/ggl90: a few modifications: |
711 |
|
- fix bottom boundary condition, and interpolation of KappaE |
712 |
|
near top and bottom |
713 |
|
- use same set of viscosity/diffusivity for TKE/momnetum/tracer |
714 |
|
- add smoothing option as in Blanke and Delecluse (1993) (--> ALLOW_GGL90_SMOOTH) |
715 |
|
- add a few options for mixing-length upper limit (--> mxlMaxFlag) |
716 |
|
o rename thetaMin,phiMin -> xgOrigin,ygOrigin |
717 |
|
(maintain temporary backward compatibility, until next checkpoint) |
718 |
|
|
719 |
|
checkpoint61h (2009/01/27) |
720 |
|
o pkg/diagnostics with "periodic averaging diagnostics": |
721 |
|
fix S/R DIAGNOSTICS_COUNT ; hack diagnostics_out.F to get NetCDF output. |
722 |
|
o pkg/my82: add missing "_d 0" ; update output of exp. vermix.my82 |
723 |
|
o pkg/obcs: fix loop ranges for balancing code |
724 |
|
o pkg/flt: |
725 |
|
- improve criteria for finding which tile owns a float. |
726 |
|
- fix FLT_EXCH for case without MPI ; apply cyclic BC + fix also the MPI case. |
727 |
|
o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg |
728 |
|
aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling |
729 |
|
with ocean biogeo) |
730 |
|
o pkg/flt: |
731 |
|
- do some cleaning and fix the restart ; |
732 |
|
- add output.txt in flt_example/results to get this pkg tested. |
733 |
|
o genmake2: add an EXTENDED_SRC option and flag. |
734 |
|
for now, cannot be turned on on command line (only through genmake_local) |
735 |
|
o pkg/mdsio: read/write vector: |
736 |
|
- singleCpuIO: fix RL/RS in MDSWRITEVECTOR by calling new S/R MDS_BUFFERtoRL/RS |
737 |
|
- singleCpuIO=F: fix arrType & filePrec & _BYTESWAPIO in both MDSREADVECTOR |
738 |
|
& MDSWRITEVECTOR by calling new S/R MDS_RD/WR_VEC_RL/RS. |
739 |
|
- affects gradient of test-exp "bottom_ctrl_5x5" (not due to _BYTESWAPIO) |
740 |
|
(drop to 4 digits matching for grad). But this test does not look very |
741 |
|
reliable (was already failling on eddy, fc5, at 6.digits). Update output. |
742 |
|
|
743 |
|
checkpoint61g (2008/12/29) |
744 |
|
o pkg/flt: |
745 |
|
- move FLT_CPPOPTIONS.h to FLT_OPTIONS.h (standard name) |
746 |
|
+ make OPTIONS file more standard. |
747 |
|
- rename S/R MDSREADVECTOR_FLT to FLT_MDSREADVECTOR (to mach src file name) |
748 |
|
- fix _BYTESWAPIO CPP-Flag |
749 |
|
- standard reading of file-parameter "data.flt" |
750 |
|
- fix argument list of S/R FLT_RESTART |
751 |
|
still need to fix _BYTESWAPIO in pkg/mdsio/mdsio_writevector.F |
752 |
|
o pkg/obcs: fix a CPP-flag, bug reported by Jeff Blundell |
753 |
|
o gather_2d.F/scatter_2d.F: suppress vectorisation on NEC SX in respond to |
754 |
|
a still unfixed compiler/optimization bug |
755 |
|
|
756 |
|
checkpoint61f (2008/11/21) |
757 |
|
o pkg/seaice, LSR solver: fix bug in GLOBAL_MAX calls ; |
758 |
|
update results of global_ocean.cs32x15.icedyn test. |
759 |
|
o move getcon.F from model/src to pkg/fizhi. |
760 |
|
o pkg/exf: add parameter for extrapolation of temp up to the surface |
761 |
|
and option to prevent negative evap (in bulk_largeyeager04 only). |
762 |
|
o Prather Advection scheme: fix tracer conservation for divergent flow |
763 |
|
(e.g., when using NonLin Free-Surface). |
764 |
|
o kpp: retire KPPmld diagnostics --> use MXLDEPTH instead |
765 |
|
o gmredi (Visbeck-variable-K): |
766 |
|
- add more parameters to Visbeck-variable-K. |
767 |
|
- use a 5 points average for dSigmaR in Visbeck-K calculation |
768 |
|
(more "homogenous": same stencil and same weights as in dSigmaH) |
769 |
|
- update output of ideal_2D_oce experiment. |
770 |
|
o fix CPP-flag REAL4_IS_SLOW, when _RS expands into real*4 |
771 |
|
(#undef REAL4_IS_SLOW) |
772 |
|
- pkg/mnc/mnc_cw_cvars.F: write _RS-grid variable as netcdf-real*4 |
773 |
|
coordinate variable |
774 |
|
- pkg/monitor/monitor.F: call mon_printstats_rs for _RS variables |
775 |
|
(surface forcing fields), removes some of the functionality |
776 |
|
- model/src/write_grid.F: write _RS variables as RS-netcdf variables |
777 |
|
- model/src/diags_oceanic_surf_flux.F: fix a few diagnostics, but |
778 |
|
probably not all: copy _RS surface flux fields to RL field before |
779 |
|
calling DIAGNOSTICS_FILL |
780 |
|
- model/inc/CPP_EEMACROS.h: make the _EXCH_*_RS macros expand into |
781 |
|
real*4 (CALL EXCH_*_RS) versions. |
782 |
|
- tested in 2 experiments: inverted_barometer & solid-body.cs-32x32x1 |
783 |
|
(generate new output). |
784 |
|
|
785 |
|
checkpoint61e (2008/10/23) |
786 |
|
o gmredi (Visbeck-variable-K): |
787 |
|
- fix the "OLD_VISBECK_CALC" option + move the #undef to GMREDI_OPTIONS.h |
788 |
|
- change computation of Visbeck-K where Slope > Smax : |
789 |
|
now: N*min(Slope,Smax) (similar to OLD_VISBECK_CALC with gkw91 taperFct) |
790 |
|
previously was: M*sqrt(min(Slope,Smax)) ; update ideal_2D_oce output. |
791 |
|
o bottom-drag in P-coord.: change units of bottomDragLinear & bottomDragQuadratic |
792 |
|
to be the same as with Z-coord. (i.e., m/s & no-units respectively). |
793 |
|
o calc_viscosity: fix index range (was wrong for CD-Scheme & explicit Visc) |
794 |
|
o pkg gmredi, linear & fm07 tapering: put an upper limit on Slope^2 so that Kwz |
795 |
|
does not become too large (to avoid precision problems in implicit-diffusion |
796 |
|
solver); update ideal_2D_oce output. |
797 |
|
o pkg ggl90: |
798 |
|
- in ggl90_cal.F: compute only one set of visc/diff, used to |
799 |
|
step forward TKE/T/S/momentum |
800 |
|
- default value of GGL90viscMax/GGL90diffMax larger and equal (to |
801 |
|
have Prandlt =1) |
802 |
|
o gmredi (fm07): |
803 |
|
- add lower limit on Transition layer thickness + lower limit on 1/lambda |
804 |
|
- allow to set few more params from data.gmredi |
805 |
|
o pkg ggl90: |
806 |
|
- add missing sqrt(2) factor in computation of mixing length |
807 |
|
scale in ggl90_calc.F |
808 |
|
(see Eq. (2.35) in Blanke and Delecluse, JPO, 1993) |
809 |
|
|
810 |
|
checkpoint61d (2008/09/25) |
811 |
|
o adjoint modifs |
812 |
|
- adapt to new field rhoInSitu |
813 |
|
- allow to revert from StoreDynVars2D, StoreDynVars3D |
814 |
|
to individual fields |
815 |
|
(switches AUTODIFF_USE_OLDSTORE_2D, AUTODIFF_USE_OLDSTORE_3D) |
816 |
|
o store 3-D (in-situ) density in commom block (DYNVARS.h) |
817 |
|
- save 1 rho computation. |
818 |
|
- no longer modify T & S inland when using down_slope pkg. |
819 |
|
o gad_som : allow to switch to SOM advection for T & S without corresponding |
820 |
|
pickup files (using new S/R: MDS_CHECK4FILE). |
821 |
|
o keep removing _BEGIN/_END_MASTER between MDSIO S/R call |
822 |
|
(for useSingleCpuIO to work in multi-threaded) |
823 |
|
o pkg/shelfice: |
824 |
|
- disentangle parameters: retire shelfIceFile in data/PARM05 and substitute |
825 |
|
with SHELFICEtopoFile in data.shelfice |
826 |
|
- move code for reading ice shelf topography and modifying hFacC into separate |
827 |
|
subroutines of the shelfice package |
828 |
|
- separate initialisation of "fixed" and "variable" variables |
829 |
|
- kTopC is not (yet) replaced by kSurfC, although this is possible |
830 |
|
o fix broken diagnostic SIatmFW and changed the units from m/s to kg/m^2/s |
831 |
|
o add initialisation of deepFac if using Pcoords (new S/R set_grid_factors) |
832 |
|
and rename: |
833 |
|
ini_phiref.F --> set_ref_state.F (+ set anelastic factors) |
834 |
|
ini_reference_state.F --> load_ref_files.F (- set anelastic factors) |
835 |
|
o change FIND_RHO_SCALAR : return rho (instead of rho - rhoConst) |
836 |
|
|
837 |
|
checkpoint61c (2008/08/30) |
838 |
|
o add option ALLOW_ADDFLUID and run-time selector "selectAddFluid" |
839 |
|
to add mass source/sink of fluid in the interior (3-D generalisation |
840 |
|
of oceanic real-fresh water flux). |
841 |
|
o pkg/monitor: fix recip_dr argument in mon_advcflw2 call (-> advcfl_W_hf_max) |
842 |
|
o vermix test experiment: switch from LINEAR EOS to MDJWF (not tested before) |
843 |
|
o new pkg: down_slope |
844 |
|
density-driven downsloping flow parameterisation (Tellus, 1999, 412-430). |
845 |
|
- presently, modify T & S inland (dwnslp_calc_rho.F). |
846 |
|
can be avoided if rho was stored in common bloc and used in calc_phi_hyd. |
847 |
|
- implementation for ocean in P-coords not tested. |
848 |
|
- add secondary test to global_ocean.90x40x15 (input.dwnslp) to check this pkg. |
849 |
|
o move kSurfC,kSurfW & kSurfS from SURFACE.h to GRID.h (next to kLowC) |
850 |
|
(to facilitate conversion of oceanic pkg to p-coordinate). |
851 |
|
o change FIND_RHO to FIND_RHO_2D : |
852 |
|
pass arguments tFld & sFld as local (tile) 2D-arrays ; +fix EOS_CHECK. |
853 |
|
o new pkg: cheapaml |
854 |
|
|
855 |
|
checkpoint61b (2008/08/05) |
856 |
|
o exch2: |
857 |
|
change index bounds in rx2_cube exchanges (new S/R: EXCH2_GET_UV_BOUNDS) |
858 |
|
- no longer depend on the order sequence (N,S,E,W). |
859 |
|
- 3rd exchange no longer needed (tested with 24 tiles). |
860 |
|
- same modif to hand-written adjoint S/R (global_ocean.cs32x15: zero diff) |
861 |
|
- exch_UV_A-grid readily available (but not yet tested). |
862 |
|
comment out 3rd exch call and remove copy of V to U at SE & NE face-corners |
863 |
|
(both are no longer needed) in exch_uv: no effect in forward run; but |
864 |
|
get truncation error differences with adjoint exch. |
865 |
|
o exch2: |
866 |
|
- change index-bounds storage (moved from target to local tile, |
867 |
|
more intuitive this way) ; rename/remove some variables. |
868 |
|
- change utils/exch2/matlab-topology-generator & code_mods accordingly. |
869 |
|
|
870 |
|
checkpoint61a (2008/07/29) |
871 |
|
o exch2/matlab-topology-generator: |
872 |
|
fix bug in index bounds for N-S internal exchange (hard to tell if this |
873 |
|
had any effect on the solution). |
874 |
|
o pkg/mnc: small fix in mnc_handle_err: make sure that length of msgbuf |
875 |
|
is exceeded |
876 |
|
o testreport: modify syntax of awk, so that it works also with |
877 |
|
awk, and not only with nawk and gawk |
878 |
|
|
879 |
|
checkpoint61 (2008/06/24) |
880 |
|
o autodiff |
881 |
|
Change default for TAF usage by removing argument '-nonew_arg' |
882 |
|
This changes TAF subroutine argument list (ordering of active var.) |
883 |
|
Omission of this flag leads to incompatibility w.r.t. TAMC |
884 |
|
To restore TAMC-compatibility, need following modifs: |
885 |
|
* use adoptfile tools/adjoint_options/adjoint_tamc_compatibility |
886 |
|
* use CPP option #define AUTODIFF_TAMC_COMPATIBILITY |
887 |
|
Tested TAF version is 1.9.22 |
888 |
|
N.B.: exch2 hand-written adjoint code currently not TAMC compatible |
889 |
|
|
890 |
|
checkpoint60 (2008/06/19) |
891 |
|
--->>> This is the last checkpoint for which generating the adjoint |
892 |
|
--->>> is done via the TAMC-compatibility TAF-flag "-nonewarg" |
893 |
|
--->>> by default. |
894 |
|
--->>> Future checkpoints will ommit this flag by default. |
895 |
|
o pkg/generic_advdiff, os7mp: simplify and avoid division by zero. |
896 |
|
o pkg/grdchk: Add gradient check to etan0 perturbations. |
897 |
|
o pkg/exf: read ice area from file (#ifdef ALLOW_ICE_AREAMASK). |
898 |
|
o pkg/autodiff: more flexibility in zeroadj. |
899 |
|
model/src: modifying do_oceanic_phys.F accordingly. |
900 |
|
o pkg/ctrl: Bounds for (kapgm,kapredi,eddypsi) parameter estimation. |
901 |
|
o model/src and pkg/gmredi: GMREDI_WITH_STABLE_ADJOINT CPP option |
902 |
|
special setup of gmredi for which the adjoint is stable |
903 |
|
enough for parameter optimization. |
904 |
|
o bridging the gap between eddy stress and GM. |
905 |
|
-> eddyTau is replaced with eddyPsi (eddyTau = f x rho0 x eddyPsi) |
906 |
|
along with a change in CPP option (now ALLOW_EDDYPSI). |
907 |
|
-> when using GM w/ GM_AdvForm: |
908 |
|
The total eddy streamfunction (Psi = eddyPsi + K x Slope) |
909 |
|
is applied either in the tracer Eq. or in momentum Eq. |
910 |
|
depending on data.gmredi (intro. GM_InMomAsStress). |
911 |
|
-> ALLOW_EDDYPSI_CONTROL for estimation purpose. |
912 |
|
The key modifications are in model/src/taueddy_external_forcing.F |
913 |
|
pkg/gmredi/gmredi_calc_*F pkg/gmredi/gmredi_*transport.F |
914 |
|
|
915 |
|
checkpoint59r (2008/05/29) |
916 |
|
o new S/R (pkg/mdsio/mdsio_facef_read.F) reading of sNx+1 x sNy+1 array |
917 |
|
from per-face file (take S/R READSYMTILE_RS out of ini_curvilinear_grid.F); |
918 |
|
fix option to read coriolis(@ cell-corner) from files with CS-grid. |
919 |
o pkg/mnc: add some attributes to standard 1D-coordinate variables |
o pkg/mnc: add some attributes to standard 1D-coordinate variables |
920 |
o pkg/diagnostics: enforce missing_value attribute for scalar variables at |
o pkg/diagnostics: enforce missing_value attribute for scalar variables at |
921 |
mass points, when using mnc for output |
mass points, when using mnc for output |
943 |
(#define PTRACERS_ALLOW_DYN_STATE in PTRACERS_OPTIONS.h) |
(#define PTRACERS_ALLOW_DYN_STATE in PTRACERS_OPTIONS.h) |
944 |
and requires a fortran 90 compiler |
and requires a fortran 90 compiler |
945 |
|
|
946 |
checkpoint59q |
checkpoint59q (2008/05/06) |
947 |
o pkg/mom_vecinv: Add energy & enstrophy conserving scheme (selectVortScheme=3) |
o pkg/mom_vecinv: Add energy & enstrophy conserving scheme (selectVortScheme=3) |
948 |
(from Sadourny, described by Burridge & Haseler, ECMWF Rep.4, 1977) |
(from Sadourny, described by Burridge & Haseler, ECMWF Rep.4, 1977) |
949 |
o Refresh tutorial_global_oce_biogeo, notably: |
o Refresh tutorial_global_oce_biogeo, notably: |
978 |
- Parameter rhowi eliminated to be replaced by floodFac = (rhosw-rhoi)/rhos |
- Parameter rhowi eliminated to be replaced by floodFac = (rhosw-rhoi)/rhos |
979 |
--> changes results of global_ocean.cs32x15.icedyn and global_ocean.cs32x15.thsice |
--> changes results of global_ocean.cs32x15.icedyn and global_ocean.cs32x15.thsice |
980 |
|
|
981 |
checkpoint59p |
checkpoint59p (2008/04/10) |
982 |
o gchem / dic / cfc : |
o gchem / dic / cfc : |
983 |
- add useDIC, useCFC , read from "data.gchem" (& hold in GCHEM.h); |
- add useDIC, useCFC , read from "data.gchem" (& hold in GCHEM.h); |
984 |
- add new parameter files: "data.dic" & "data.cfc" ; |
- add new parameter files: "data.dic" & "data.cfc" ; |
1004 |
bottom ; only used with variable horizontal viscosity and non-hydrostatic. |
bottom ; only used with variable horizontal viscosity and non-hydrostatic. |
1005 |
also fix diagnostics VISCAHW & VISCA4W. |
also fix diagnostics VISCAHW & VISCA4W. |
1006 |
|
|
1007 |
checkpoint59o |
checkpoint59o (2008/03/07) |
1008 |
o dome/code/obcs_calc.F: avoid division by zero (detected using gfortran). |
o dome/code/obcs_calc.F: avoid division by zero (detected using gfortran). |
1009 |
o change the loop ordering in most gad_*_adv_x.F to improve vectorization: |
o change the loop ordering in most gad_*_adv_x.F to improve vectorization: |
1010 |
move a few statemens out the main loop into separate loops |
move a few statemens out the main loop into separate loops |
1045 |
introducing a generic routine (ctrl_map_ini_gen.F). |
introducing a generic routine (ctrl_map_ini_gen.F). |
1046 |
- Modification of ctrl_bound/adctrl_bound handling control vector bounds. |
- Modification of ctrl_bound/adctrl_bound handling control vector bounds. |
1047 |
|
|
1048 |
checkpoint59n |
checkpoint59n (2008/02/09) |
1049 |
o pkg/diagnostics: for large number of diagnostics, store diagnostic mate |
o pkg/diagnostics: for large number of diagnostics, store diagnostic mate |
1050 |
number in dedicate array "hdiag": |
number in dedicate array "hdiag": |
1051 |
- new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST |
- new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST |
1099 |
for now this is only available for the C-grid code and also within |
for now this is only available for the C-grid code and also within |
1100 |
#ifdef SEAICE_ALLOW_TEM, because this option may slow down the EVP code |
#ifdef SEAICE_ALLOW_TEM, because this option may slow down the EVP code |
1101 |
|
|
1102 |
checkpoint59m |
checkpoint59m (2008/01/14) |
1103 |
o pkg/seaice: use different time constant for melting (SEAICE_gamma_t) |
o pkg/seaice: use different time constant for melting (SEAICE_gamma_t) |
1104 |
and freezing (SEAICE_gamma_t_frz) ice due to mixed layer temperature |
and freezing (SEAICE_gamma_t_frz) ice due to mixed layer temperature |
1105 |
o gad_som : fix flux output (& diagnostics) to have same units as other |
o gad_som : fix flux output (& diagnostics) to have same units as other |
1117 |
o pkg/salt_plume: added various options for salt plume depth |
o pkg/salt_plume: added various options for salt plume depth |
1118 |
criterion and for vertical distribution of the salt |
criterion and for vertical distribution of the salt |
1119 |
|
|
1120 |
checkpoint59l |
checkpoint59l (2007/12/18) |
1121 |
o pkg/ptracers: new version of ptracers pickup: |
o pkg/ptracers: new version of ptracers pickup: |
1122 |
read meta file and write only fields which are needed to restart. |
read meta file and write only fields which are needed to restart. |
1123 |
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
1139 |
o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
1140 |
or U/VICE from U/VWIND before computing U/VSTRESS |
or U/VICE from U/VWIND before computing U/VSTRESS |
1141 |
|
|
1142 |
checkpoint59k |
checkpoint59k (2007/11/30) |
1143 |
o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
1144 |
dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
1145 |
o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
1161 |
use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
1162 |
to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
1163 |
|
|
1164 |
checkpoint59j |
checkpoint59j (2007/11/09) |
1165 |
o in pkgs: dic, obcs, offline, rbcs: |
o in pkgs: dic, obcs, offline, rbcs: |
1166 |
standard way to compute coeff. for time interpolation between 2 time reccords |
standard way to compute coeff. for time interpolation between 2 time reccords |
1167 |
which retains full precision (& make results less dependent on compiler). |
which retains full precision (& make results less dependent on compiler). |
1204 |
o added open boundary conditions capability for seaice |
o added open boundary conditions capability for seaice |
1205 |
HSNOW, HSALT, UICE, and VICE |
HSNOW, HSALT, UICE, and VICE |
1206 |
|
|
1207 |
checkpoint59i |
checkpoint59i (2007/10/21) |
1208 |
o adjoint: |
o adjoint: |
1209 |
* fix multiDimAdvection adjoint |
* fix multiDimAdvection adjoint |
1210 |
(partial recomputation problem by TAF for fVerT(:,:,kDown) |
(partial recomputation problem by TAF for fVerT(:,:,kDown) |
1245 |
Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
1246 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
1247 |
|
|
1248 |
checkpoint59h |
checkpoint59h (2007/09/29) |
1249 |
o pkg/exf: |
o pkg/exf: |
1250 |
- improve vectorization by moving if-statement out of loops in |
- improve vectorization by moving if-statement out of loops in |
1251 |
exf_mapfields, exf_radiation |
exf_mapfields, exf_radiation |
1278 |
o testreport: change AD testing : check against results/output_adm.txt |
o testreport: change AD testing : check against results/output_adm.txt |
1279 |
using same scripts as for forward test. |
using same scripts as for forward test. |
1280 |
|
|
1281 |
checkpoint59g |
checkpoint59g (2007/09/17) |
1282 |
o adjoint testing: in preparation for changing testreport: |
o adjoint testing: in preparation for changing testreport: |
1283 |
- output format: cost and grad written on separated lines |
- output format: cost and grad written on separated lines |
1284 |
- ad output results in directory "results" (instead of "results_ad") |
- ad output results in directory "results" (instead of "results_ad") |
1323 |
global_ocean.90x40x15 (fw&adm), lab_sea (fw&adm) & lab_sea.lsr, |
global_ocean.90x40x15 (fw&adm), lab_sea (fw&adm) & lab_sea.lsr, |
1324 |
ideal_2D_oce, isomip.htd, natl_box, tutorial_global_oce_latlon. |
ideal_2D_oce, isomip.htd, natl_box, tutorial_global_oce_latlon. |
1325 |
|
|
1326 |
checkpoint59f |
checkpoint59f (2007/08/21) |
1327 |
o pkg/autodiff: zero_adj resets an ajoint variable to zero (in adjoint mode) |
o pkg/autodiff: zero_adj resets an ajoint variable to zero (in adjoint mode) |
1328 |
o pkg/ctrl: ctrl_bound forces parameter corrections to stay in |
o pkg/ctrl: ctrl_bound forces parameter corrections to stay in |
1329 |
a bounded range (in forward mode) |
a bounded range (in forward mode) |
1354 |
o pkg/bulk_force: fix loading into Qsw of Short-Wave flux; and update |
o pkg/bulk_force: fix loading into Qsw of Short-Wave flux; and update |
1355 |
output of global_ocean.cs32x15.thsice . |
output of global_ocean.cs32x15.thsice . |
1356 |
|
|
1357 |
checkpoint59e |
checkpoint59e (2007/07/26) |
1358 |
o exch2: new S/R that only use the cube-tracer (center-position) exchange: |
o exch2: new S/R that only use the cube-tracer (center-position) exchange: |
1359 |
for B-grid vector (not yet tested) and C-grid vector (<- only used |
for B-grid vector (not yet tested) and C-grid vector (<- only used |
1360 |
when option W2_USE_R1_ONLY in W2_OPTIONS.h is defined). |
when option W2_USE_R1_ONLY in W2_OPTIONS.h is defined). |
1384 |
* reintroduced cap of HEFF via MAX_HEFF and SEAICE_CAP_HEFF option |
* reintroduced cap of HEFF via MAX_HEFF and SEAICE_CAP_HEFF option |
1385 |
* applied OBCS T/S mask to HEFFM sea ice mask |
* applied OBCS T/S mask to HEFFM sea ice mask |
1386 |
|
|
1387 |
checkpoint59d |
checkpoint59d (2007/06/21) |
1388 |
o standard name: {PKG}_DIAGNOSTICS_STATE to fill diagnostics array |
o standard name: {PKG}_DIAGNOSTICS_STATE to fill diagnostics array |
1389 |
for {PKG} state variables, and called from DO_STATEVARS_DIAGS. |
for {PKG} state variables, and called from DO_STATEVARS_DIAGS. |
1390 |
(keep {PKG}_DIAGNOSTICS_FILL for non-state variables diagnostics) |
(keep {PKG}_DIAGNOSTICS_FILL for non-state variables diagnostics) |
1430 |
It is turned off by default (=-1.), because it changes the results. |
It is turned off by default (=-1.), because it changes the results. |
1431 |
- make it possible to read AREA from a file, too. |
- make it possible to read AREA from a file, too. |
1432 |
|
|
1433 |
checkpoint59c |
checkpoint59c (2007/06/04) |
1434 |
o add S/R and diagnostics for oceanic mixed-layer depth |
o add S/R and diagnostics for oceanic mixed-layer depth |
1435 |
o move GMRedi call after all vertical mixing schemes (including KPP) |
o move GMRedi call after all vertical mixing schemes (including KPP) |
1436 |
o pkg/thsice: |
o pkg/thsice: |
1463 |
Storing is now bundled into large arrays to optimized I/O |
Storing is now bundled into large arrays to optimized I/O |
1464 |
(and second step in cleanup of the_main_loop) |
(and second step in cleanup of the_main_loop) |
1465 |
|
|
1466 |
checkpoint59b |
checkpoint59b (2007/05/16) |
1467 |
o coupler (pkg/atm_ocn_coupler, pkg/ocn_compon_interf, pkg/atm2d): |
o coupler (pkg/atm_ocn_coupler, pkg/ocn_compon_interf, pkg/atm2d): |
1468 |
- export/import (between ocean & coupler) fields needed for ocean DIC. |
- export/import (between ocean & coupler) fields needed for ocean DIC. |
1469 |
o pkg/seaice: |
o pkg/seaice: |
1534 |
o OpenAD |
o OpenAD |
1535 |
- changed verification/OpenAD to full baroclinic setup (including GM/Redi) |
- changed verification/OpenAD to full baroclinic setup (including GM/Redi) |
1536 |
|
|
1537 |
checkpoint59a |
checkpoint59a (2007/05/01) |
1538 |
o pkg/seaice: some parameter clarifications and a little bit of clean up |
o pkg/seaice: some parameter clarifications and a little bit of clean up |
1539 |
o pkg/thsice: rename run-time parameters: |
o pkg/thsice: rename run-time parameters: |
1540 |
himin -> hIceMin |
himin -> hIceMin |
1576 |
o pkg/kpp: add code to have mixing in shelf ice caverns |
o pkg/kpp: add code to have mixing in shelf ice caverns |
1577 |
- add myThid to all kpp routines (long overdue) |
- add myThid to all kpp routines (long overdue) |
1578 |
|
|
1579 |
checkpoint59 |
checkpoint59 (2007/04/19) |
1580 |
o pkg/exf: |
o pkg/exf: |
1581 |
- fix wind-stress location: defined on A-grid (if ALLOW_ATM_WIND & |
- fix wind-stress location: defined on A-grid (if ALLOW_ATM_WIND & |
1582 |
ALLOW_BULKFORMULAE or USE_EXF_INTERPOLATION), otherwise, defined on C-grid |
ALLOW_BULKFORMULAE or USE_EXF_INTERPOLATION), otherwise, defined on C-grid |
1602 |
- 2nd set of modifs for thsice adjoint in conjunction with exf |
- 2nd set of modifs for thsice adjoint in conjunction with exf |
1603 |
o enable runtime flag useEXF (useCAL is set to .T. if useEXF=.T.) |
o enable runtime flag useEXF (useCAL is set to .T. if useEXF=.T.) |
1604 |
|
|
1605 |
checkpoint58y_post |
checkpoint58y_post (2007/04/15) |
1606 |
o Added capability for latitudinal dependence of Bryan and Lewis, 1979 |
o Added capability for latitudinal dependence of Bryan and Lewis, 1979 |
1607 |
vertical diffusivity, similar to that in MOM4; turned on using |
vertical diffusivity, similar to that in MOM4; turned on using |
1608 |
#define ALLOW_BL79_LAT_VARY in CPP_OPTIONS.h and specified using |
#define ALLOW_BL79_LAT_VARY in CPP_OPTIONS.h and specified using |
1618 |
- better when using non-linear advection scheme (not yet fully tested) |
- better when using non-linear advection scheme (not yet fully tested) |
1619 |
- can also be used in atmospheric set-up (for now, only the diffusion). |
- can also be used in atmospheric set-up (for now, only the diffusion). |
1620 |
|
|
1621 |
checkpoint58x_post |
checkpoint58x_post (2007/04/04) |
1622 |
o IO option for global-file compact format: |
o IO option for global-file compact format: |
1623 |
- add options when generating topology (utils/exch2/matlab-topology-generator) |
- add options when generating topology (utils/exch2/matlab-topology-generator) |
1624 |
- add I/O capability (pkg/mdsio). |
- add I/O capability (pkg/mdsio). |
1626 |
for now long-line format not yet supported by pkg/mdsio (& exch2). |
for now long-line format not yet supported by pkg/mdsio (& exch2). |
1627 |
o shelfice: add a few diagnostics |
o shelfice: add a few diagnostics |
1628 |
|
|
1629 |
checkpoint58w_post |
checkpoint58w_post (2007/03/13) |
1630 |
o p-coord. non-hydrostatic using reference profile for w <-> omega conversion: |
o p-coord. non-hydrostatic using reference profile for w <-> omega conversion: |
1631 |
rVel2wUnit & wUnit2rVel are computed from reference profile Tref,Sref |
rVel2wUnit & wUnit2rVel are computed from reference profile Tref,Sref |
1632 |
(and replace horiVertRatio in NH code). |
(and replace horiVertRatio in NH code). |
1647 |
o move call to cal_readparms up to make calendar parameters/variable available |
o move call to cal_readparms up to make calendar parameters/variable available |
1648 |
to all packages |
to all packages |
1649 |
|
|
1650 |
checkpoint58v_post |
checkpoint58v_post (2007/02/08) |
1651 |
o change EOS (from POLY3 to JMD95P) in global_ocean.90x45x15 to get |
o change EOS (from POLY3 to JMD95P) in global_ocean.90x45x15 to get |
1652 |
useDynP_inEos_Zc tested. |
useDynP_inEos_Zc tested. |
1653 |
o pkg/exf: changes to properly interpolate/mask/scale initial fields |
o pkg/exf: changes to properly interpolate/mask/scale initial fields |
1666 |
- use this scheme for temperature & salinity in 2 advection test exp.: |
- use this scheme for temperature & salinity in 2 advection test exp.: |
1667 |
advect_xy & advect_xz, respectively. |
advect_xy & advect_xz, respectively. |
1668 |
|
|
1669 |
checkpoint58u_post |
checkpoint58u_post (2007/01/12) |
1670 |
o new test-exp: fizhi-cs-32x32x40 (40 levels) to replace the 10 levels. |
o new test-exp: fizhi-cs-32x32x40 (40 levels) to replace the 10 levels. |
1671 |
o move call to INI_FORCING from PACKAGES_INIT_VARIABLES to INITIALISE_VARIA. |
o move call to INI_FORCING from PACKAGES_INIT_VARIABLES to INITIALISE_VARIA. |
1672 |
o testreport: add option "-skipdir" to skip some test. |
o testreport: add option "-skipdir" to skip some test. |
1681 |
o pkg/seaice: fix a bug in the flooding algorithm: turn off the snow machine |
o pkg/seaice: fix a bug in the flooding algorithm: turn off the snow machine |
1682 |
o pkg/thsice: fix reading mnc-pickups |
o pkg/thsice: fix reading mnc-pickups |
1683 |
|
|
1684 |
checkpoint58t_post |
checkpoint58t_post (2006/12/30) |
1685 |
o pkg/diagnostics: fix multi-threaded output (when singleCpuIO=F) |
o pkg/diagnostics: fix multi-threaded output (when singleCpuIO=F) |
1686 |
o pkg/mdsio: |
o pkg/mdsio: |
1687 |
- clean-up mdsio_readfield.F & mdsio_writefield_new.F and |
- clean-up mdsio_readfield.F & mdsio_writefield_new.F and |
1724 |
- introduce a few local fields to avoid modifying external fields such |
- introduce a few local fields to avoid modifying external fields such |
1725 |
as atemp, etc. |
as atemp, etc. |
1726 |
|
|
1727 |
checkpoint58s_post |
checkpoint58s_post (2006/12/11) |
1728 |
o pkg/exf: moved exf_init_runoff.F to exf_init.F and exf_set_gen.F |
o pkg/exf: moved exf_init_runoff.F to exf_init.F and exf_set_gen.F |
1729 |
changed exf_set_gen.F so that |
changed exf_set_gen.F so that |
1730 |
genperiod=0 means input file is one time-constant field and |
genperiod=0 means input file is one time-constant field and |
1758 |
as actual snow thickness. It now refers everywhere to effective snow |
as actual snow thickness. It now refers everywhere to effective snow |
1759 |
thickness, meaning that for non-zero AREA, actual thickness is HEFF/AREA. |
thickness, meaning that for non-zero AREA, actual thickness is HEFF/AREA. |
1760 |
|
|
1761 |
checkpoint58r_post |
checkpoint58r_post (2006/11/17) |
1762 |
o modifications to pkg/seaice/growth.F, which change results of |
o modifications to pkg/seaice/growth.F, which change results of |
1763 |
lab_sea experiment: fixes pertain to melting snow over open water, to |
lab_sea experiment: fixes pertain to melting snow over open water, to |
1764 |
masking EVAP under sea ice, and to using the correct AREA variable for |
masking EVAP under sea ice, and to using the correct AREA variable for |
1782 |
o ctrl: adding new control variables: |
o ctrl: adding new control variables: |
1783 |
lwflux, lwdown, evap, snowprecip, apressure, runoff |
lwflux, lwdown, evap, snowprecip, apressure, runoff |
1784 |
|
|
1785 |
checkpoint58q_post |
checkpoint58q_post (2006/10/20) |
1786 |
o added CPP_EEOPTIONS.h flag DISABLE_MPI_READY_TO_RECEIVE. Speeds up |
o added CPP_EEOPTIONS.h flag DISABLE_MPI_READY_TO_RECEIVE. Speeds up |
1787 |
1/6-deg Southern Ocean configuration by 8% on IBM Datastar and |
1/6-deg Southern Ocean configuration by 8% on IBM Datastar and |
1788 |
high_res_cube configuration by 4% on Columbia. |
high_res_cube configuration by 4% on Columbia. |
1793 |
single CPU io) so that TAF does not have to see EESUPPORT.h |
single CPU io) so that TAF does not have to see EESUPPORT.h |
1794 |
o pkg/seaice: implement sea-ice loading (when using RealFreshWaterFlux) |
o pkg/seaice: implement sea-ice loading (when using RealFreshWaterFlux) |
1795 |
|
|
1796 |
checkpoint58p_post |
checkpoint58p_post (2006/09/08) |
1797 |
o obcs: stop if obcs is used with useCDscheme = .true. |
o obcs: stop if obcs is used with useCDscheme = .true. |
1798 |
o shelfice: |
o shelfice: |
1799 |
- fix a sign error so that no slip at shelfice interface works |
- fix a sign error so that no slip at shelfice interface works |
1804 |
o added adjoint exch routined for all exch*3d* routines |
o added adjoint exch routined for all exch*3d* routines |
1805 |
and updated flow directives |
and updated flow directives |
1806 |
|
|
1807 |
checkpoint58o_post |
checkpoint58o_post (2006/08/28) |
1808 |
o replace calls to EXCH_Z & EXCH_UV_AGRID: use the new _3D_ version ; |
o replace calls to EXCH_Z & EXCH_UV_AGRID: use the new _3D_ version ; |
1809 |
remove old subroutines (_XY_ & _XYZ_); update the adjoint version. |
remove old subroutines (_XY_ & _XYZ_); update the adjoint version. |
1810 |
o change controling S/R for writing pickup file (new S/R do_write_pickup) |
o change controling S/R for writing pickup file (new S/R do_write_pickup) |
1818 |
- add a simple boundary layer scheme to reduce noise |
- add a simple boundary layer scheme to reduce noise |
1819 |
- fix the indexing in shelfice_u/v_drag so that there will be actually drag |
- fix the indexing in shelfice_u/v_drag so that there will be actually drag |
1820 |
|
|
1821 |
checkpoint58n_post |
checkpoint58n_post (2006/08/14) |
1822 |
o fix globalArea multi-threaded calculation: need to apply GLOBAL_SUM to |
o fix globalArea multi-threaded calculation: need to apply GLOBAL_SUM to |
1823 |
local variable (not in common block). |
local variable (not in common block). |
1824 |
o lot of small changes for multi-threaded. Most tests (using OMP & ifort) pass. |
o lot of small changes for multi-threaded. Most tests (using OMP & ifort) pass. |
1839 |
and stop cleanly when MAX_NO_THREADS is too small. |
and stop cleanly when MAX_NO_THREADS is too small. |
1840 |
o add S/R BAR_CHECK to check multi-threaded barrier synchronization |
o add S/R BAR_CHECK to check multi-threaded barrier synchronization |
1841 |
|
|
1842 |
checkpoint58m_post |
checkpoint58m_post (2006/07/17) |
1843 |
o add a Non-Hydroatatic test (with 3-D Coriolis, NHMTerms, biharmonic Visc. |
o add a Non-Hydroatatic test (with 3-D Coriolis, NHMTerms, biharmonic Visc. |
1844 |
and side-drag) on CS-grid : global_ocean.cs32x15.viscA4 |
and side-drag) on CS-grid : global_ocean.cs32x15.viscA4 |
1845 |
o make "tutorial_global_oce_latlon" from standard "global_ocean.90x40x15" exp. |
o make "tutorial_global_oce_latlon" from standard "global_ocean.90x40x15" exp. |
1865 |
update rotating_tank results, but not plume_on_slope (affected at |
update rotating_tank results, but not plume_on_slope (affected at |
1866 |
truncation level, 11 digits). |
truncation level, 11 digits). |
1867 |
|
|
1868 |
checkpoint58l_post |
checkpoint58l_post (2006/07/12) |
1869 |
o calc_gw: |
o calc_gw: |
1870 |
- take bi,bj loops outside calc_gw to fix Pb with local array KappaRU,V |
- take bi,bj loops outside calc_gw to fix Pb with local array KappaRU,V |
1871 |
- remove side-drag for now (need to fix it); update plume_on_slope results. |
- remove side-drag for now (need to fix it); update plume_on_slope results. |
1883 |
o pkg/rbcs |
o pkg/rbcs |
1884 |
* add all necessary infrastructure for pkg/rbcs levN adjoint checkpointing |
* add all necessary infrastructure for pkg/rbcs levN adjoint checkpointing |
1885 |
|
|
1886 |
checkpoint58k_post |
checkpoint58k_post (2006/07/06) |
1887 |
o testreport: |
o testreport: |
1888 |
- always build in dir. "build" (if not there, mkdir build instead of building |
- always build in dir. "build" (if not there, mkdir build instead of building |
1889 |
& running in input) |
& running in input) |
1916 |
advection subroutine (but still not used within DST advection S/R) |
advection subroutine (but still not used within DST advection S/R) |
1917 |
o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim) |
o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim) |
1918 |
|
|
1919 |
checkpoint58j_post |
checkpoint58j_post (2006/06/15) |
1920 |
o new driver S/R: LOAD_FIELDS_DRIVER to load external forcing fields |
o new driver S/R: LOAD_FIELDS_DRIVER to load external forcing fields |
1921 |
from file (collects calls previously in FORWARD_STEP) |
from file (collects calls previously in FORWARD_STEP) |
1922 |
o move call to SEAICE_MODEL from FORWARD_STEP to DO_OCEANIC_PHYS |
o move call to SEAICE_MODEL from FORWARD_STEP to DO_OCEANIC_PHYS |
1924 |
o genmake2 |
o genmake2 |
1925 |
replace target "ad_taf" by $(EXE_AD) ; add $(EXE_AD) to the make CLEAN list. |
replace target "ad_taf" by $(EXE_AD) ; add $(EXE_AD) to the make CLEAN list. |
1926 |
|
|
1927 |
checkpoint58i_post |
checkpoint58i_post (2006/06/14) |
1928 |
o pkg/seaice: add parameter that allows to scale/turn off effect of seaice |
o pkg/seaice: add parameter that allows to scale/turn off effect of seaice |
1929 |
on wind stress (SEAICEstressFactor defaults to 1.) |
on wind stress (SEAICEstressFactor defaults to 1.) |
1930 |
o Total number of Timers is finite (<=40): comment out 2 non-essential one |
o Total number of Timers is finite (<=40): comment out 2 non-essential one |
1938 |
non-EVP pickup files when using SEAICEuseEVP |
non-EVP pickup files when using SEAICEuseEVP |
1939 |
- fix sign error in diffusion in seaice_calc_rhs |
- fix sign error in diffusion in seaice_calc_rhs |
1940 |
|
|
1941 |
checkpoint58h_post |
checkpoint58h_post (2006/06/07) |
1942 |
* Modifications for bottom topography control |
* Modifications for bottom topography control |
1943 |
o replace hFacC by _hFacC at various places |
o replace hFacC by _hFacC at various places |
1944 |
o replace ALLOW_HFACC_CONTROL by ALLOW_DEPTH_CONTROL |
o replace ALLOW_HFACC_CONTROL by ALLOW_DEPTH_CONTROL |
1948 |
o works for 5x5 box, doesnt work for global_ocean.90x40x15 |
o works for 5x5 box, doesnt work for global_ocean.90x40x15 |
1949 |
* Adding verification for 5x5 box (4-layer) bottom topography control |
* Adding verification for 5x5 box (4-layer) bottom topography control |
1950 |
|
|
1951 |
checkpoint58g_post |
checkpoint58g_post (2006/06/07) |
1952 |
o pkg/diagnostics: implement "periodic averaging diagnostics" (e.g., |
o pkg/diagnostics: implement "periodic averaging diagnostics" (e.g., |
1953 |
used for mean seasonal cycle, mean diurnal cycle); add an example |
used for mean seasonal cycle, mean diurnal cycle); add an example |
1954 |
in verification/global_ocean.cs32x15/input.thsice/data.diagnostics |
in verification/global_ocean.cs32x15/input.thsice/data.diagnostics |
1964 |
o pkg/seaice |
o pkg/seaice |
1965 |
- make (default) second order advection a bit less confusing? |
- make (default) second order advection a bit less confusing? |
1966 |
|
|
1967 |
checkpoint58f_post |
checkpoint58f_post (2006/06/05) |
1968 |
o couple pkg/thsice and pkg/exf (as a preparation for coupling pkg/thsice |
o couple pkg/thsice and pkg/exf (as a preparation for coupling pkg/thsice |
1969 |
to pkg/seaice): |
to pkg/seaice): |
1970 |
- new routines thsice_map_exf and thsice_get_exf provide the interface |
- new routines thsice_map_exf and thsice_get_exf provide the interface |
1995 |
o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
1996 |
testreport accordingly |
testreport accordingly |
1997 |
|
|
1998 |
checkpoint58e_post |
checkpoint58e_post (2006/05/17) |
1999 |
o SEAICE_CGRID adjoint done |
o SEAICE_CGRID adjoint done |
2000 |
o R_STAR adjoint implemented. |
o R_STAR adjoint implemented. |
2001 |
* Seems to just work (based on global_ocean.90x40x15/code_ad_nlfs/ ) |
* Seems to just work (based on global_ocean.90x40x15/code_ad_nlfs/ ) |
2003 |
o Make pkg/profile fully independent of ecco,cost, etc. stuff |
o Make pkg/profile fully independent of ecco,cost, etc. stuff |
2004 |
to be able to use it in pure forward. |
to be able to use it in pure forward. |
2005 |
|
|
2006 |
checkpoint58d_post |
checkpoint58d_post (2006/04/21) |
2007 |
o upgrade simple test-experiment to tutorial example: |
o upgrade simple test-experiment to tutorial example: |
2008 |
step.1: duplicate the experiment and (step.2) will remove the old copy. |
step.1: duplicate the experiment and (step.2) will remove the old copy. |
2009 |
tutorial_barotropic_gyre <- copy of exp0 (R1:barotropic_gyre_in_a_box) |
tutorial_barotropic_gyre <- copy of exp0 (R1:barotropic_gyre_in_a_box) |
2043 |
o Benign bug fix in initialization (spotted by M. Mazloff) of |
o Benign bug fix in initialization (spotted by M. Mazloff) of |
2044 |
ctrl_set_globfld_xz.F ctrl_set_globfld_yz.F |
ctrl_set_globfld_xz.F ctrl_set_globfld_yz.F |
2045 |
|
|
2046 |
checkpoint58c_post |
checkpoint58c_post (2006/03/23) |
2047 |
o adjoint: finish NLFS adjoint and provide reference output in |
o adjoint: finish NLFS adjoint and provide reference output in |
2048 |
verification/global_ocean.90x40x15/results_ad_nlfs |
verification/global_ocean.90x40x15/results_ad_nlfs |
2049 |
o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the |
o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the |
2077 |
+ move computation of the viscosities eta and zeta into a new separate |
+ move computation of the viscosities eta and zeta into a new separate |
2078 |
routine (because I need to recompute them in seaice_ocean_stress.F) |
routine (because I need to recompute them in seaice_ocean_stress.F) |
2079 |
|
|
2080 |
checkpoint58b_post |
checkpoint58b_post (2006/03/13) |
2081 |
o AIM+thSIce: fix sign of Short-Wave through the Ice ; |
o AIM+thSIce: fix sign of Short-Wave through the Ice ; |
2082 |
update output.txt of exp. aim.5l_cs.thSI |
update output.txt of exp. aim.5l_cs.thSI |
2083 |
o various mnc cleanups and improvements: |
o various mnc cleanups and improvements: |
2140 |
(turn on with SEAICEuseFluxForm) |
(turn on with SEAICEuseFluxForm) |
2141 |
- replace 1 in 3d global fields by kSurface in growth.F |
- replace 1 in 3d global fields by kSurface in growth.F |
2142 |
|
|
2143 |
checkpoint58a_post |
checkpoint58a_post (2006/02/13) |
2144 |
o seaice: |
o seaice: |
2145 |
- bug fix in advect.F |
- bug fix in advect.F |
2146 |
o shelfice: |
o shelfice: |
2193 |
and parameters (note: calcWindStress replaces .NOT.readwindstress). |
and parameters (note: calcWindStress replaces .NOT.readwindstress). |
2194 |
- cleaner interface with pkg/thSIce (new S/R THSICE_GET_PRECIP). |
- cleaner interface with pkg/thSIce (new S/R THSICE_GET_PRECIP). |
2195 |
|
|
2196 |
checkpoint58 |
checkpoint58 (2006/01/12) |
2197 |
o add "--embed-source" option to genmake2 which, when the supporting |
o add "--embed-source" option to genmake2 which, when the supporting |
2198 |
tools can be compiled (as determined by genmake2) will turn on the |
tools can be compiled (as determined by genmake2) will turn on the |
2199 |
embed_files package which then embeds the entire MITgcm source code |
embed_files package which then embeds the entire MITgcm source code |
2206 |
* Remove 3-dim. relaxation code from pkg/exf (now use only pkg/rbcs) |
* Remove 3-dim. relaxation code from pkg/exf (now use only pkg/rbcs) |
2207 |
* Thanks to Tom Haine for testing! |
* Thanks to Tom Haine for testing! |
2208 |
|
|
2209 |
checkpoint57z_post |
checkpoint57z_post (2005/12/31) |
2210 |
o make CG3D solver compatible with Free-surface at k > 1 (p-coordinate): |
o make CG3D solver compatible with Free-surface at k > 1 (p-coordinate): |
2211 |
affects output (@ truncation level) of exp. plume_on_slope ; updated. |
affects output (@ truncation level) of exp. plume_on_slope ; updated. |
2212 |
o fix the pickup behavior for obcs in combination with ptracers |
o fix the pickup behavior for obcs in combination with ptracers |
2237 |
* Absolute scale somewhat unclear so far |
* Absolute scale somewhat unclear so far |
2238 |
* no area weighting was included since no other cost term does so far |
* no area weighting was included since no other cost term does so far |
2239 |
|
|
2240 |
checkpoint57y_post |
checkpoint57y_post (2005/12/08) |
2241 |
First step for a NLFS adjoint |
First step for a NLFS adjoint |
2242 |
o initially suppress rStar (new flag DISABLE_RSTAR_CODE) |
o initially suppress rStar (new flag DISABLE_RSTAR_CODE) |
2243 |
o new init. routines for calc_r_star, calc_surf_dr |
o new init. routines for calc_r_star, calc_surf_dr |
2244 |
o still need to deal with ini_masks_etc |
o still need to deal with ini_masks_etc |
2245 |
o testreport seemed happy |
o testreport seemed happy |
2246 |
checkpoint57y_pre |
checkpoint57y_pre (2005/12/08) |
2247 |
|
|
2248 |
o obcs: always reset wVel & eta (to zero or prescribe it) at the OBs. |
o obcs: always reset wVel & eta (to zero or prescribe it) at the OBs. |
2249 |
o add new package rbcs (for relaxing ptracers at boundaries/depth/surface etc) |
o add new package rbcs (for relaxing ptracers at boundaries/depth/surface etc) |
2252 |
o clean up GCHEM_OPTIONS.h/DIC_OPTIONS.h (all options should |
o clean up GCHEM_OPTIONS.h/DIC_OPTIONS.h (all options should |
2253 |
be in GCHEM_OPTIONS). |
be in GCHEM_OPTIONS). |
2254 |
|
|
2255 |
checkpoint57x_post |
checkpoint57x_post (2005/12/04) |
2256 |
o fix testreport Pb in multiple test experiment. |
o fix testreport Pb in multiple test experiment. |
2257 |
o cleanup our namelist syntax in verification: |
o cleanup our namelist syntax in verification: |
2258 |
- make it more F95 standards compliant (some work still needed) |
- make it more F95 standards compliant (some work still needed) |
2272 |
(there are a number of extensive recomputations) |
(there are a number of extensive recomputations) |
2273 |
* Initialize certain variables needed for adjoint |
* Initialize certain variables needed for adjoint |
2274 |
|
|
2275 |
checkpoint57w_post |
checkpoint57w_post (2005/11/03) |
2276 |
o pkg/mdsio: use MAX_LEN_FNAM (instead of hard coded 80) for file-names |
o pkg/mdsio: use MAX_LEN_FNAM (instead of hard coded 80) for file-names |
2277 |
fix the singleCpuIO RS version of MDSWRITEFIELD |
fix the singleCpuIO RS version of MDSWRITEFIELD |
2278 |
and add a WARNING if using globalFiles=T with multi-processors. |
and add a WARNING if using globalFiles=T with multi-processors. |
2289 |
ptracers in a large domain with a constant non-zero value. Also, |
ptracers in a large domain with a constant non-zero value. Also, |
2290 |
untangle ptracers_init.F a little. |
untangle ptracers_init.F a little. |
2291 |
|
|
2292 |
checkpoint57v_post |
checkpoint57v_post (2005/10/13) |
2293 |
o change dome exp. to use variable viscosity in side-drag terms. |
o change dome exp. to use variable viscosity in side-drag terms. |
2294 |
o remove all the files from the cfc_offline test since they are now |
o remove all the files from the cfc_offline test since they are now |
2295 |
incorporated into tutorial_cfc_offline which has been producing |
incorporated into tutorial_cfc_offline which has been producing |
2330 |
o CS-grid: fix divergence contribution to Leith viscosity. Affects (@ |
o CS-grid: fix divergence contribution to Leith viscosity. Affects (@ |
2331 |
truncation level) 4/5 MLAdjust test results (11&12 digits match). |
truncation level) 4/5 MLAdjust test results (11&12 digits match). |
2332 |
|
|
2333 |
checkpoint57t_post |
checkpoint57t_post (2005/10/03) |
2334 |
o test biharmonic viscosity + no-slip with exp: global_ocean.cs32x15.viscA4 |
o test biharmonic viscosity + no-slip with exp: global_ocean.cs32x15.viscA4 |
2335 |
o finish adding brackets (coriolis S/R, vecinv) in multi-terms sum to get |
o finish adding brackets (coriolis S/R, vecinv) in multi-terms sum to get |
2336 |
same truncation, independent of the face number: affects affects several |
same truncation, independent of the face number: affects affects several |
2353 |
Suggested values of viscosity parameters found in mom_calc_visc. |
Suggested values of viscosity parameters found in mom_calc_visc. |
2354 |
Many new viscosity diagnostics available. |
Many new viscosity diagnostics available. |
2355 |
|
|
2356 |
checkpoint57s_post |
checkpoint57s_post (2005/09/20) |
2357 |
o Add clearing-house for viscosity calculations, mom_calc_visc and |
o Add clearing-house for viscosity calculations, mom_calc_visc and |
2358 |
correct numerous bugs in LeithD and Smagorinsky discretizations. |
correct numerous bugs in LeithD and Smagorinsky discretizations. |
2359 |
mom_calc_visc now allows for Smagorinsky, Leith and LeithD to be |
mom_calc_visc now allows for Smagorinsky, Leith and LeithD to be |
2379 |
and works with both EXCH1 and EXCH2 (but needs more testing) |
and works with both EXCH1 and EXCH2 (but needs more testing) |
2380 |
- writing works for all verification test cases w/ g77 on Linux |
- writing works for all verification test cases w/ g77 on Linux |
2381 |
|
|
2382 |
checkpoint57r_post |
checkpoint57r_post (2005/09/07) |
2383 |
o make MNC variable initialization happen earlier |
o make MNC variable initialization happen earlier |
2384 |
o add diagnostics for (almost) each term of the momentum Eq. |
o add diagnostics for (almost) each term of the momentum Eq. |
2385 |
o remove SST,SSS,UVEL_k2,VVEL_k2 diagnostics. |
o remove SST,SSS,UVEL_k2,VVEL_k2 diagnostics. |
2399 |
o natl_box_adjoint input_seaice for Lab. Sea now available online via wget |
o natl_box_adjoint input_seaice for Lab. Sea now available online via wget |
2400 |
(see README file) |
(see README file) |
2401 |
|
|
2402 |
checkpoint57q_post |
checkpoint57q_post (2005/08/19) |
2403 |
o fix initialisation Pb in calc_gw (get NANs in exp5 with g77) |
o fix initialisation Pb in calc_gw (get NANs in exp5 with g77) |
2404 |
o fix annoying months-old bug in mnc/mdsio output for seaice pkg |
o fix annoying months-old bug in mnc/mdsio output for seaice pkg |
2405 |
- bug was reported by Jean-Michel and Ian Fenty |
- bug was reported by Jean-Michel and Ian Fenty |
2416 |
* verification/OpenAD/code/ has necessary scripts and description; |
* verification/OpenAD/code/ has necessary scripts and description; |
2417 |
* converts, compiles and runs successfully; |
* converts, compiles and runs successfully; |
2418 |
|
|
2419 |
checkpoint57p_post |
checkpoint57p_post (2005/08/01) |
2420 |
o reading of delXfile & delYfile moved from ini_parms.F to ini_grid.F |
o reading of delXfile & delYfile moved from ini_parms.F to ini_grid.F |
2421 |
o move ${PKG}_MNC_INIT from ${PKG}_READ_PARAMS to ${PKG}_INIT_FIXED |
o move ${PKG}_MNC_INIT from ${PKG}_READ_PARAMS to ${PKG}_INIT_FIXED |
2422 |
(already the case for some pkgs, including recent MNC_init, e.g. thsice) |
(already the case for some pkgs, including recent MNC_init, e.g. thsice) |
2430 |
global_ocean_pressure(10),ideal_2D_oce(10),internal_wave(9),lab_sea(12), |
global_ocean_pressure(10),ideal_2D_oce(10),internal_wave(9),lab_sea(12), |
2431 |
matrix_example(7!),natl_box(12),plume_on_slope(11),vermix(12x3,11x2). |
matrix_example(7!),natl_box(12),plume_on_slope(11),vermix(12x3,11x2). |
2432 |
|
|
2433 |
checkpoint57o_post |
checkpoint57o_post (2005/07/30) |
2434 |
o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and |
o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and |
2435 |
(2) its ready to be documented during the 20050801 DocFest |
(2) its ready to be documented during the 20050801 DocFest |
2436 |
o MNC-ify the gmredi package -- tested and works w/ and w/o mnc |
o MNC-ify the gmredi package -- tested and works w/ and w/o mnc |
2439 |
in global1x1_tot/code_seaice_adj to access indices 32, 33 |
in global1x1_tot/code_seaice_adj to access indices 32, 33 |
2440 |
(worth another tag) |
(worth another tag) |
2441 |
|
|
2442 |
checkpoint57n_post |
checkpoint57n_post (2005/07/29) |
2443 |
o adding precip control xx_precip 32 |
o adding precip control xx_precip 32 |
2444 |
o adding swflux control xx_swflux 33 |
o adding swflux control xx_swflux 33 |
2445 |
o Replacing 10 forcing penalty cost routines by 1 generic. |
o Replacing 10 forcing penalty cost routines by 1 generic. |
2455 |
(applies in particular to tapelev I/O) |
(applies in particular to tapelev I/O) |
2456 |
o removed inefficient K-loop in all active_file*control*.F |
o removed inefficient K-loop in all active_file*control*.F |
2457 |
|
|
2458 |
checkpoint57m_post |
checkpoint57m_post (2005/07/28) |
2459 |
o re-arrange exp. adjustment.cs-32x32x1 (adjust_nlfs.cs-32x32x1 merge into) |
o re-arrange exp. adjustment.cs-32x32x1 (adjust_nlfs.cs-32x32x1 merge into) |
2460 |
and advect_cs (use EXCH-2 and standard cs-32 grid files). |
and advect_cs (use EXCH-2 and standard cs-32 grid files). |
2461 |
o pkg/exch2: filling of face-corner halo regions is optional |
o pkg/exch2: filling of face-corner halo regions is optional |
2462 |
(ifdef W2_FILL_NULL_REGIONS) and is turned off by default. |
(ifdef W2_FILL_NULL_REGIONS) and is turned off by default. |
2463 |
|
|
2464 |
checkpoint57l_post |
checkpoint57l_post (2005/07/14) |
2465 |
tag before updating tutorials (pre-release-2) |
tag before updating tutorials (pre-release-2) |
2466 |
o add cos & sin of grid-direction orientation angle (curvilinear grid only, |
o add cos & sin of grid-direction orientation angle (curvilinear grid only, |
2467 |
for output and interpolation of input fields onto model grid) |
for output and interpolation of input fields onto model grid) |
2473 |
o add mnc output capability to diagnostics/diagstat and update |
o add mnc output capability to diagnostics/diagstat and update |
2474 |
our cvsignore files for the ACSII output generated |
our cvsignore files for the ACSII output generated |
2475 |
|
|
2476 |
checkpoint57k_post |
checkpoint57k_post (2005/07/02) |
2477 |
o lab_sea now uses diagnostics package and provides a suite of |
o lab_sea now uses diagnostics package and provides a suite of |
2478 |
new EXF diagnostics output. |
new EXF diagnostics output. |
2479 |
|
|
2480 |
checkpoint57j_post |
checkpoint57j_post (2005/06/30) |
2481 |
o exf |
o exf |
2482 |
* bug fix in exf_bulkformulae for psimh (spotted by Eliyahu Biton): |
* bug fix in exf_bulkformulae for psimh (spotted by Eliyahu Biton): |
2483 |
Bracket missing in eqn. for psimh (eqn. 7 of Large & Pond, 1982); |
Bracket missing in eqn. for psimh (eqn. 7 of Large & Pond, 1982); |
2507 |
o fix few little things to avoid floating error with -ftrapuv (ifort v9) |
o fix few little things to avoid floating error with -ftrapuv (ifort v9) |
2508 |
(ini_spherical_polar_grid.F, calc_r_star.F, monitor/mon_surfcor.F) |
(ini_spherical_polar_grid.F, calc_r_star.F, monitor/mon_surfcor.F) |
2509 |
|
|
2510 |
checkpoint57i_post |
checkpoint57i_post (2005/06/19) |
2511 |
o Diagnostics package was changed: diagnostic allocation is now deactivated |
o Diagnostics package was changed: diagnostic allocation is now deactivated |
2512 |
by setting an empty file name in the namelist (used to be by setting 0 frequency) |
by setting an empty file name in the namelist (used to be by setting 0 frequency) |
2513 |
o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ; |
o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ; |
2526 |
tested against monitor output (including land & thSIce) on various exp. |
tested against monitor output (including land & thSIce) on various exp. |
2527 |
o make seaice-pkg I/O type flags (MNC/MDS) more standard. |
o make seaice-pkg I/O type flags (MNC/MDS) more standard. |
2528 |
|
|
2529 |
checkpoint57h_done |
checkpoint57h_done (2005/05/19) |
2530 |
tag after changing user customized files (DIAGNOSTICS_SIZE.h, |
tag after changing user customized files (DIAGNOSTICS_SIZE.h, |
2531 |
data.diagnostics, data.gchem, data.ptracers) is done. |
data.diagnostics, data.gchem, data.ptracers) is done. |
2532 |
|
|
2535 |
o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE |
o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE |
2536 |
and rename it: DIFFERENT_MULTIPLE |
and rename it: DIFFERENT_MULTIPLE |
2537 |
|
|
2538 |
checkpoint57h_post |
checkpoint57h_post (2005/05/14) |
2539 |
o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers |
o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers |
2540 |
o pkg/diagnostics: change output frequency, now in seconds (instead |
o pkg/diagnostics: change output frequency, now in seconds (instead |
2541 |
of Nb of iterations). This requires to change data.diagnostics. |
of Nb of iterations). This requires to change data.diagnostics. |
2542 |
checkpoint57h_pre |
checkpoint57h_pre (2005/05/12) |
2543 |
|
|
2544 |
o in mnc, let the user create the output dir if both mnc_outdir_date |
o in mnc, let the user create the output dir if both mnc_outdir_date |
2545 |
and mnc_outdir_num are false |
and mnc_outdir_num are false |
2553 |
o fix mnc flags in pkg/seaice so that they are "owned" by seaice, |
o fix mnc flags in pkg/seaice so that they are "owned" by seaice, |
2554 |
not mnc -- this mistake was found by JMC and is now corrected |
not mnc -- this mistake was found by JMC and is now corrected |
2555 |
|
|
2556 |
checkpoint57g_post |
checkpoint57g_post (2005/04/15) |
2557 |
o add Adams-Bashforth 3rd Order time stepping: |
o add Adams-Bashforth 3rd Order time stepping: |
2558 |
- default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3) |
- default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3) |
2559 |
- not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ... |
- not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ... |
2560 |
checkpoint57g_pre |
checkpoint57g_pre (2005/04/15) |
2561 |
|
|
2562 |
o make lambda[Theta,Salt]ClimRelax spatially varying |
o make lambda[Theta,Salt]ClimRelax spatially varying |
2563 |
(default remains spatially uniform constant based on tau) |
(default remains spatially uniform constant based on tau) |
2567 |
o separate masks used for ctrl_pack/unpack 'from write_grid' output |
o separate masks used for ctrl_pack/unpack 'from write_grid' output |
2568 |
(suggested by G. Forget) |
(suggested by G. Forget) |
2569 |
|
|
2570 |
checkpoint57f_post |
checkpoint57f_post (2005/04/06) |
2571 |
o add parameter "baseTime" = model base time = time at iteration zero |
o add parameter "baseTime" = model base time = time at iteration zero |
2572 |
new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to |
new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to |
2573 |
account for baseTime shift |
account for baseTime shift |
2574 |
o move Coriolis arrays from PARAMS.h to GRID.h |
o move Coriolis arrays from PARAMS.h to GRID.h |
2575 |
checkpoint57f_pre |
checkpoint57f_pre (2005/04/06) |
2576 |
|
|
2577 |
o mnc-ifying the seaice package |
o mnc-ifying the seaice package |
2578 |
o introduced an alternative length scale calculation for use in the limiting |
o introduced an alternative length scale calculation for use in the limiting |
2593 |
* gad_calc_rhs: fool adjoint, revert to advscheme=30 in reverse when using 33 |
* gad_calc_rhs: fool adjoint, revert to advscheme=30 in reverse when using 33 |
2594 |
* mom_vi_hdissip: to be able to use Leith scheme in adjoint |
* mom_vi_hdissip: to be able to use Leith scheme in adjoint |
2595 |
|
|
2596 |
checkpoint57e_post |
checkpoint57e_post (2005/02/28) |
2597 |
o Adding eddy stress controls a la Ferreira et al. |
o Adding eddy stress controls a la Ferreira et al. |
2598 |
checkpoint57e_pre (actually was tagged: eckpoint57e_pre) |
checkpoint57e_pre (actually was tagged: eckpoint57e_pre) |
2599 |
|
|
2611 |
o allow to use pkg diagnostics for LAND pkg output & Shapiro Tendencies. |
o allow to use pkg diagnostics for LAND pkg output & Shapiro Tendencies. |
2612 |
o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2) |
o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2) |
2613 |
|
|
2614 |
checkpoint57d_post |
checkpoint57d_post (2005/02/11) |
2615 |
o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing |
o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing |
2616 |
o modify verification/ideal_2D_oce so that it tests the creation of mnc |
o modify verification/ideal_2D_oce so that it tests the creation of mnc |
2617 |
output from the diagnostics package |
output from the diagnostics package |
2633 |
(note: still needs some work specially for snap-shot diagnostics) |
(note: still needs some work specially for snap-shot diagnostics) |
2634 |
duplicate & replace UVELVVEL diagnostics with UV_VEL_C & UV_VEL_Z |
duplicate & replace UVELVVEL diagnostics with UV_VEL_C & UV_VEL_Z |
2635 |
|
|
2636 |
checkpoint57c_post |
checkpoint57c_post (2005/01/27) |
2637 |
o Change testing option (-ieee) to get closer agreement between g77 & ifort |
o Change testing option (-ieee) to get closer agreement between g77 & ifort |
2638 |
o generate new output.txt files on faulks with g77 & the new -ieee option |
o generate new output.txt files on faulks with g77 & the new -ieee option |
2639 |
checkpoint57c_pre |
checkpoint57c_pre (2005/01/27) |
2640 |
|
|
2641 |
o add "_d 0" in freeze ; change some "FLOAT" to "DFLOAT" and went back (TAF); |
o add "_d 0" in freeze ; change some "FLOAT" to "DFLOAT" and went back (TAF); |
2642 |
update output.txt of exp. global_ocean.90x40x15 |
update output.txt of exp. global_ocean.90x40x15 |
2669 |
* enable useSingleCpuIO for state estimation (ctrl_pack/unpack) mdsio_gl.F |
* enable useSingleCpuIO for state estimation (ctrl_pack/unpack) mdsio_gl.F |
2670 |
* N.B.: leave tiled I/O for tapelev (i.e. mds...vector) |
* N.B.: leave tiled I/O for tapelev (i.e. mds...vector) |
2671 |
|
|
2672 |
checkpoint57b_post |
checkpoint57b_post (2004/12/20) |
2673 |
o simplify options in diagnostics_fill arguments (remove weird combinations) |
o simplify options in diagnostics_fill arguments (remove weird combinations) |
2674 |
o fix MNC coordinate variables so that they now contain per-face index |
o fix MNC coordinate variables so that they now contain per-face index |
2675 |
values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in |
values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in |
2715 |
look through the short list of active diag. (instead of the long list) |
look through the short list of active diag. (instead of the long list) |
2716 |
create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active |
create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active |
2717 |
|
|
2718 |
checkpoint57a_post |
checkpoint57a_post (2004/12/10) |
2719 |
o this set of changes restores TAMC compatibility |
o this set of changes restores TAMC compatibility |
2720 |
tested for global_ocean.90x40x15 adjoint on trough |
tested for global_ocean.90x40x15 adjoint on trough |
2721 |
(what a pain) |
(what a pain) |
2722 |
|
|
2723 |
checkpoint57a_pre |
checkpoint57a_pre (2004/12/10) |
2724 |
o some modifs in tools/build_options for sunos |
o some modifs in tools/build_options for sunos |
2725 |
o call ctrl_pack for ctrl at end for optimcycle=0 |
o call ctrl_pack for ctrl at end for optimcycle=0 |
2726 |
|
|
2727 |
checkpoint57 |
checkpoint57 (2004/12/09) |
2728 |
o add horizontal bi-harmonic viscosity for vertical velocity |
o add horizontal bi-harmonic viscosity for vertical velocity |
2729 |
- new parameter viscA4W (defaults to viscA4) |
- new parameter viscA4W (defaults to viscA4) |
2730 |
- affects only non-hydrostatic code |
- affects only non-hydrostatic code |
2742 |
o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
2743 |
(theta2, salt2 in ecco_cost_weights) |
(theta2, salt2 in ecco_cost_weights) |
2744 |
|
|
2745 |
checkpoint56c_post |
checkpoint56c_post (2004/12/03) |
2746 |
o OBCS as control variables |
o OBCS as control variables |
2747 |
- update ctrl_ad_diff.list, obcs_ad_diff.list |
- update ctrl_ad_diff.list, obcs_ad_diff.list |
2748 |
- remove balance of obcs controls from default |
- remove balance of obcs controls from default |
2760 |
o mdsio: |
o mdsio: |
2761 |
- i/o-vector change debugLevel from debLevA to debLevB |
- i/o-vector change debugLevel from debLevA to debLevB |
2762 |
|
|
2763 |
checkpoint56b_post |
checkpoint56b_post (2004/12/01) |
2764 |
o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that |
o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that |
2765 |
is called from DO_THE_MODEL_IO |
is called from DO_THE_MODEL_IO |
2766 |
- rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE |
- rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE |
2775 |
testreport. |
testreport. |
2776 |
o ptracers_monitor: bug fix for MPI |
o ptracers_monitor: bug fix for MPI |
2777 |
|
|
2778 |
checkpoint56a_post |
checkpoint56a_post (2004/11/28) |
2779 |
o GCHEM: finish reorganizating the package |
o GCHEM: finish reorganizating the package |
2780 |
- forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency |
- forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency |
2781 |
(introduces another 3D-array for each passive tracer, but only if |
(introduces another 3D-array for each passive tracer, but only if |
2820 |
- cleaning up |
- cleaning up |
2821 |
o small cleaning of exch2: remove files that are also in eesupp/src |
o small cleaning of exch2: remove files that are also in eesupp/src |
2822 |
|
|
2823 |
checkpoint56 |
checkpoint56 (2004/11/17) |
2824 |
o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0 |
o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0 |
2825 |
o mnc: cleanup "full" files--fixes out-of-memory problem |
o mnc: cleanup "full" files--fixes out-of-memory problem |
2826 |
o ECCO-GODAE |
o ECCO-GODAE |
2850 |
o exf: exf_inscal_runoff: separated default conversion [m/year] -> [m/sec] |
o exf: exf_inscal_runoff: separated default conversion [m/year] -> [m/sec] |
2851 |
from sign change |
from sign change |
2852 |
|
|
2853 |
checkpoint55j_post |
checkpoint55j_post (2004/11/10) |
2854 |
o isolate dissipation tendency (allow to keep it out off AB) in V.I form. |
o isolate dissipation tendency (allow to keep it out off AB) in V.I form. |
2855 |
affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice) |
affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice) |
2856 |
o add consistent build directories and .cvsignore files to verification |
o add consistent build directories and .cvsignore files to verification |
2861 |
o allow (vecinv only) a different horiz. viscosity for Divergence and Vorticity; |
o allow (vecinv only) a different horiz. viscosity for Divergence and Vorticity; |
2862 |
affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice) |
affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice) |
2863 |
|
|
2864 |
checkpoint55i_post |
checkpoint55i_post (2004/10/28) |
2865 |
o change arrays for total vertical diffusivity (2.D if explicit, |
o change arrays for total vertical diffusivity (2.D if explicit, |
2866 |
3.D if implicit) ; each ptracer uses its own background value. |
3.D if implicit) ; each ptracer uses its own background value. |
2867 |
o added mnc/NetCDF output capability to ocn_compon_interf |
o added mnc/NetCDF output capability to ocn_compon_interf |
2876 |
o Compute the non-local term using either KPP vertical diffusivity (=default) |
o Compute the non-local term using either KPP vertical diffusivity (=default) |
2877 |
or the total vertical diffusivity (when KPP_ghatUseTotalDiffus=T) |
or the total vertical diffusivity (when KPP_ghatUseTotalDiffus=T) |
2878 |
|
|
2879 |
checkpoint55h_post |
checkpoint55h_post (2004/10/20) |
2880 |
o add verification test "vermix" |
o add verification test "vermix" |
2881 |
o remove all the *_ioinc flags and replace with the single global |
o remove all the *_ioinc flags and replace with the single global |
2882 |
outputTypesInclusive flag |
outputTypesInclusive flag |
2884 |
o call PACKAGE_BOOT & PACKAGES_READPARMS just after INI_PARMS |
o call PACKAGE_BOOT & PACKAGES_READPARMS just after INI_PARMS |
2885 |
o useMNC moved from data.mnc to data.pkg |
o useMNC moved from data.mnc to data.pkg |
2886 |
|
|
2887 |
checkpoint55g_post |
checkpoint55g_post (2004/10/14) |
2888 |
o Renaming carbon AD experiments to comply with testreport conventions |
o Renaming carbon AD experiments to comply with testreport conventions |
2889 |
o Updating adjoint of Held-Suarez hs94.1x64x5 |
o Updating adjoint of Held-Suarez hs94.1x64x5 |
2890 |
o Fixing directives for non-ECCO forward_step, after ECCO directives |
o Fixing directives for non-ECCO forward_step, after ECCO directives |
2894 |
o Updating adjoint output for natl_box_adjoint after |
o Updating adjoint output for natl_box_adjoint after |
2895 |
pkg/ecco has been modified (see taga c55d_post) |
pkg/ecco has been modified (see taga c55d_post) |
2896 |
|
|
2897 |
checkpoint55f_post |
checkpoint55f_post (2004/10/13) |
2898 |
o rename to timeave_init_fixed |
o rename to timeave_init_fixed |
2899 |
|
|
2900 |
checkpoint55e_post |
checkpoint55e_post (2004/10/13) |
2901 |
o some delicate re-shuffle of store directives to avoid one |
o some delicate re-shuffle of store directives to avoid one |
2902 |
extra call of do_oceanic_physics |
extra call of do_oceanic_physics |
2903 |
affects ecco_the_main_loop.F, do_oceanic_physics.F |
affects ecco_the_main_loop.F, do_oceanic_physics.F |
2905 |
o NB: this may break global_ocean adjoint temporarily, |
o NB: this may break global_ocean adjoint temporarily, |
2906 |
but it is clear how to fix it. Will do later, need this now. |
but it is clear how to fix it. Will do later, need this now. |
2907 |
|
|
2908 |
checkpoint55d_post |
checkpoint55d_post (2004/10/11) |
2909 |
o ECCO specific cost function terms (up-to-date with 1x1 runs) |
o ECCO specific cost function terms (up-to-date with 1x1 runs) |
2910 |
o ecco_cost_weights is modified to 1x1 runs |
o ecco_cost_weights is modified to 1x1 runs |
2911 |
o modifs to allow observations to be read in as |
o modifs to allow observations to be read in as |
2912 |
single file or yearly files |
single file or yearly files |
2913 |
o enable to read exf forcing fields as either |
o enable to read exf forcing fields as either |
2914 |
single file or yearly files (flag useExfYearlyFields) |
single file or yearly files (flag useExfYearlyFields) |
2915 |
checkpoint55d_pre |
checkpoint55d_pre (2004/10/08) |
2916 |
|
|
2917 |
o switch between 2-level and 3-level checkpointing |
o switch between 2-level and 3-level checkpointing |
2918 |
o add ability of MNC to write local and "partial" (eg. 2D slices where |
o add ability of MNC to write local and "partial" (eg. 2D slices where |
2960 |
- changed argument list of OBCS_CALC to myTime+deltaTclock |
- changed argument list of OBCS_CALC to myTime+deltaTclock |
2961 |
- fixed about 35 bugs in obcs_external_fields_load |
- fixed about 35 bugs in obcs_external_fields_load |
2962 |
|
|
2963 |
checkpoint55c_post |
checkpoint55c_post (2004/09/23) |
2964 |
o obcs stuff |
o obcs stuff |
2965 |
- new runtime flags useOBCSprescribe, useOBCSbalance |
- new runtime flags useOBCSprescribe, useOBCSbalance |
2966 |
- re-arranged obcs_calc |
- re-arranged obcs_calc |
2974 |
o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments |
o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments |
2975 |
which simplifies the calls and passes the ifc check-bounds test |
which simplifies the calls and passes the ifc check-bounds test |
2976 |
|
|
2977 |
checkpoint55b_post |
checkpoint55b_post (2004/09/22) |
2978 |
o add a 2D scalar, Z location, exchange_2 routine. |
o add a 2D scalar, Z location, exchange_2 routine. |
2979 |
o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows |
o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows |
2980 |
to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)] |
to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)] |
2985 |
o fix gad_advection.F (CubedSphere part), back to version 1.23 |
o fix gad_advection.F (CubedSphere part), back to version 1.23 |
2986 |
o fix bug in mom_vi_del2uv.F (CubedSphere part). |
o fix bug in mom_vi_del2uv.F (CubedSphere part). |
2987 |
|
|
2988 |
checkpoint55a_post |
checkpoint55a_post (2004/09/20) |
2989 |
o merged code to |
o merged code to |
2990 |
* prescribe/read time-dependent open boundaries |
* prescribe/read time-dependent open boundaries |
2991 |
(works in conjunction with exf, cal) |
(works in conjunction with exf, cal) |
2993 |
* each boundary N/S/E/W now has its own CPP option |
* each boundary N/S/E/W now has its own CPP option |
2994 |
(healthy for the adjoint) |
(healthy for the adjoint) |
2995 |
|
|
2996 |
checkpoint55 |
checkpoint55 (2004/09/17) |
2997 |
o up-to-date adjoint of previous breaks |
o up-to-date adjoint of previous breaks |
2998 |
- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
2999 |
- global_ocean_ebm: adjoint still needs fix (TLM ok) |
- global_ocean_ebm: adjoint still needs fix (TLM ok) |
3003 |
o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
3004 |
(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
3005 |
|
|
3006 |
checkpoint54f_post |
checkpoint54f_post (2004/09/16) |
3007 |
o in verification/carbin/ remove experiment related to |
o in verification/carbin/ remove experiment related to |
3008 |
ALLOW_PASSIVE_TRACER (array tr1 etc) |
ALLOW_PASSIVE_TRACER (array tr1 etc) |
3009 |
code_ad/ input_ad/ results_ad |
code_ad/ input_ad/ results_ad |
3029 |
- numerous small formatting cleanups for ProTeX |
- numerous small formatting cleanups for ProTeX |
3030 |
o add version info (via BUILD_INFO.h) to MNC and stdout |
o add version info (via BUILD_INFO.h) to MNC and stdout |
3031 |
|
|
3032 |
checkpoint54e_post |
checkpoint54e_post (2004/09/02) |
3033 |
o add two new packages |
o add two new packages |
3034 |
- pp81 (Packanowski and Philander, 1981), Richardson number and |
- pp81 (Packanowski and Philander, 1981), Richardson number and |
3035 |
stratification dependent mixing |
stratification dependent mixing |
3036 |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
3037 |
- these scheme operate in a similar manner as KPP (without ghat, of |
- these scheme operate in a similar manner as KPP (without ghat, of |
3038 |
course), however there is only one diffusivity that is used for both |
course), however there is only one diffusivity that is used for both |
3039 |
temperature and salinity (and passive tracers)ç |
temperature and salinity (and passive tracers) |
3040 |
o add offline package |
o add offline package |
3041 |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
3042 |
provided by Stephanie Dutkiewicz |
provided by Stephanie Dutkiewicz |
3043 |
o genmake2: add ability to search for C compilers and cleanup test output |
o genmake2: add ability to search for C compilers and cleanup test output |
3044 |
- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
3045 |
|
|
3046 |
checkpoint54d_post |
checkpoint54d_post (2004/07/27) |
3047 |
o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
3048 |
o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
3049 |
leading to additional shift by 5 days each year of integration |
leading to additional shift by 5 days each year of integration |
3059 |
o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
3060 |
o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
3061 |
|
|
3062 |
checkpoint54c_post |
checkpoint54c_post (2004/07/18) |
3063 |
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
3064 |
this affects (truncation error) output.txt of test-exp: |
this affects (truncation error) output.txt of test-exp: |
3065 |
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
3070 |
o start to test mnc routinely in exp0 |
o start to test mnc routinely in exp0 |
3071 |
o add sea-ice loading (sIceLoad) as a new forcing field. |
o add sea-ice loading (sIceLoad) as a new forcing field. |
3072 |
|
|
3073 |
checkpoint54b_post |
checkpoint54b_post (2004/07/08) |
3074 |
o add testreport "-j JOBS" option for parallel builds (tested and pretty |
o add testreport "-j JOBS" option for parallel builds (tested and pretty |
3075 |
impressive on Altix and Opteron systems) |
impressive on Altix and Opteron systems) |
3076 |
o diagnostics can now write NetCDF files through the mnc package |
o diagnostics can now write NetCDF files through the mnc package |
3080 |
affects (truncation error) output of lab_sea & natl_box exp.: updated |
affects (truncation error) output of lab_sea & natl_box exp.: updated |
3081 |
o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.) |
o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.) |
3082 |
|
|
3083 |
checkpoint54a_post |
checkpoint54a_post (2004/07/06) |
3084 |
o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order). |
o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order). |
3085 |
o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.) |
o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.) |
3086 |
o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished) |
o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished) |
3087 |
o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D) |
o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D) |
3088 |
+ internal_wave (shift in writing cg2d_ini_res) |
+ internal_wave (shift in writing cg2d_ini_res) |
3089 |
checkpoint54a_pre |
checkpoint54a_pre (2004/07/05) |
3090 |
|
|
3091 |
o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice |
o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice |
3092 |
- modified verification/lab_sea and natl_box_adjoint accordingly |
- modified verification/lab_sea and natl_box_adjoint accordingly |
3093 |
|
|
3094 |
checkpoint54 |
checkpoint54 (2004/07/02) |
3095 |
checkpoint53g_post |
checkpoint53g_post (2004/07/02) |
3096 |
o prepare splitting of thermodynamics: store convect.counter in common block |
o prepare splitting of thermodynamics: store convect.counter in common block |
3097 |
o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error) |
o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error) |
3098 |
output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave |
output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave |
3101 |
o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S) |
o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S) |
3102 |
o restore adjointability |
o restore adjointability |
3103 |
|
|
3104 |
checkpoint53f_post |
checkpoint53f_post (2004/06/25) |
3105 |
o modifications that affect AIM experiment results (update output.txt): |
o modifications that affect AIM experiment results (update output.txt): |
3106 |
- no advection of S at top interface Nr (pkg/generic_advdiff) |
- no advection of S at top interface Nr (pkg/generic_advdiff) |
3107 |
- air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F) |
- air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F) |
3114 |
o added rotating_tank experiment |
o added rotating_tank experiment |
3115 |
checkpoint53e_pre |
checkpoint53e_pre |
3116 |
|
|
3117 |
checkpoint53d_post |
checkpoint53d_post (2004/06/14) |
3118 |
o faulks upgraded: re-generate output.txt that have changed: |
o faulks upgraded: re-generate output.txt that have changed: |
3119 |
global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box |
global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box |
3120 |
o Added Bryan and Lewis, 1979, vertical diffusivity profile |
o Added Bryan and Lewis, 1979, vertical diffusivity profile |
3133 |
o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation |
o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation |
3134 |
of mom_common/ |
of mom_common/ |
3135 |
- simple re-arrangement of instructions within computing loop |
- simple re-arrangement of instructions within computing loop |
3136 |
checkpoint53d_pre |
checkpoint53d_pre (2004/05/21) |
3137 |
|
|
3138 |
checkpoint53c_post |
checkpoint53c_post (2004/05/21) |
3139 |
o new version of coupler for AIM+thSIce and Ocean models |
o new version of coupler for AIM+thSIce and Ocean models |
3140 |
- new fields (SSS,h_MixLayer ...) are exchanged through the coupler |
- new fields (SSS,h_MixLayer ...) are exchanged through the coupler |
3141 |
- land: change Evaporation of snow |
- land: change Evaporation of snow |
3152 |
* TLM OK |
* TLM OK |
3153 |
* ADM not sufficient accuracy yet (needs further testing) |
* ADM not sufficient accuracy yet (needs further testing) |
3154 |
|
|
3155 |
checkpoint53b_post |
checkpoint53b_post (2004/05/14) |
3156 |
o Commiting new energy balance model to repository |
o Commiting new energy balance model to repository |
3157 |
* package is pkg/ebm |
* package is pkg/ebm |
3158 |
* verif. is verification/global_ocean_ebm |
* verif. is verification/global_ocean_ebm |
3170 |
C by atmospheric eddy transports. |
C by atmospheric eddy transports. |
3171 |
C J. Climate 7(12), 1870-1882 |
C J. Climate 7(12), 1870-1882 |
3172 |
o Will need long integration testing. |
o Will need long integration testing. |
3173 |
checkpoint53b_pre |
checkpoint53b_pre (2004/05/14) |
3174 |
|
|
3175 |
o created pkg/mom_common in preparation for variable viscosity code |
o created pkg/mom_common in preparation for variable viscosity code |
3176 |
o renamed and split ini_mnc_io |
o renamed and split ini_mnc_io |
3178 |
o AIM using land: soil wetness availability account for snow |
o AIM using land: soil wetness availability account for snow |
3179 |
o added printMapIncludesZeros to EEPARMS namelist |
o added printMapIncludesZeros to EEPARMS namelist |
3180 |
|
|
3181 |
checkpoint53a_post |
checkpoint53a_post (2004/05/11) |
3182 |
o restore TAMC compatiility for exf_constants.h |
o restore TAMC compatiility for exf_constants.h |
3183 |
(no usage of _d in .h) |
(no usage of _d in .h) |
3184 |
o Additional storing in KPP in an attempt to fix |
o Additional storing in KPP in an attempt to fix |
3191 |
and hence gives results closer to that of Experiment 2. |
and hence gives results closer to that of Experiment 2. |
3192 |
Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again. |
Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again. |
3193 |
|
|
3194 |
checkpoint53 |
checkpoint53 (2004/05/06) |
3195 |
o stable checkpoint with up to date adjoint |
o stable checkpoint with up to date adjoint |
3196 |
TLM tests only run for 1st grdchk at the moment. Its unclear if |
TLM tests only run for 1st grdchk at the moment. Its unclear if |
3197 |
this is a code problem or a problem with resetting code for g_ |
this is a code problem or a problem with resetting code for g_ |
3201 |
o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ) |
o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ) |
3202 |
are both still in chaos following their security messes. |
are both still in chaos following their security messes. |
3203 |
|
|
3204 |
checkpoint52n_post |
checkpoint52n_post (2004/05/06) |
3205 |
o various build (mostly genmake2) changes including: |
o various build (mostly genmake2) changes including: |
3206 |
- ability to build/run more easily within Cygwin and MacOS X |
- ability to build/run more easily within Cygwin and MacOS X |
3207 |
- more complicated Makefiles with a stronger dependence on Gnu Make |
- more complicated Makefiles with a stronger dependence on Gnu Make |
3232 |
- maintain snow precipitation unchanged (even if Tsf >=0). |
- maintain snow precipitation unchanged (even if Tsf >=0). |
3233 |
both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice |
both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice |
3234 |
|
|
3235 |
checkpoint52m_post |
checkpoint52m_post (2004/04/18) |
3236 |
o commented out call to cal_GetMonthsRec in swfrac.F and added some comments; |
o commented out call to cal_GetMonthsRec in swfrac.F and added some comments; |
3237 |
this does not change any of the results, because myIter=0 in swfrac always |
this does not change any of the results, because myIter=0 in swfrac always |
3238 |
lead to jwtype=2 (the default anyway), but the call makes little sense |
lead to jwtype=2 (the default anyway), but the call makes little sense |
3264 |
o Added functionality to grdchk: |
o Added functionality to grdchk: |
3265 |
pick global i,j,k position (or nearest wet) where to perform check. |
pick global i,j,k position (or nearest wet) where to perform check. |
3266 |
|
|
3267 |
checkpoint52l_post |
checkpoint52l_post (2004/03/11) |
3268 |
o new land formulation: |
o new land formulation: |
3269 |
a) use ground enthalpy as prognostic variable to ensure exact |
a) use ground enthalpy as prognostic variable to ensure exact |
3270 |
energy conservation. |
energy conservation. |
3275 |
a) Treat separately land / ocean / sea-ice surface fluxes |
a) Treat separately land / ocean / sea-ice surface fluxes |
3276 |
to allow implicit computation of land & sea-ice surface temp. |
to allow implicit computation of land & sea-ice surface temp. |
3277 |
b) add snow precipitation. |
b) add snow precipitation. |
3278 |
checkpoint52l_pre |
checkpoint52l_pre (2004/03/11) |
3279 |
|
|
3280 |
o fix problem (when 1 tile is empty) in min/max monitor. |
o fix problem (when 1 tile is empty) in min/max monitor. |
3281 |
o fix bug in timeAve (u,vZetatave in common block) |
o fix bug in timeAve (u,vZetatave in common block) |
3288 |
o aim.5l_cs: modify sea-ice fraction input file ; update output |
o aim.5l_cs: modify sea-ice fraction input file ; update output |
3289 |
o exf: Adding simple range check routine for exf fields after read |
o exf: Adding simple range check routine for exf fields after read |
3290 |
|
|
3291 |
checkpoint52k_post |
checkpoint52k_post (2004/02/23) |
3292 |
o removed top-level directory "diags" |
o removed top-level directory "diags" |
3293 |
- we migrated these functions to pkg/timeave a long time ago |
- we migrated these functions to pkg/timeave a long time ago |
3294 |
o fixed bug introduced in pkg/monitor |
o fixed bug introduced in pkg/monitor |
3301 |
taveFreq, dumpFreq, pChkptFreq |
taveFreq, dumpFreq, pChkptFreq |
3302 |
o MAIN and ECCO differentiability restored |
o MAIN and ECCO differentiability restored |
3303 |
|
|
3304 |
checkpoint52j_post |
checkpoint52j_post (2004/02/18) |
3305 |
o fix nchklev in tamc.h for global_ocean... |
o fix nchklev in tamc.h for global_ocean... |
3306 |
o Bringing flow and store directives up-to-date |
o Bringing flow and store directives up-to-date |
3307 |
o Really weird thing! |
o Really weird thing! |
3309 |
starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
3310 |
TAF places a faulty re-call of initialise_varia |
TAF places a faulty re-call of initialise_varia |
3311 |
after cost_final call which should not be there! |
after cost_final call which should not be there! |
3312 |
checkpoint52j_pre |
checkpoint52j_pre (2004/02/03) |
3313 |
|
|
3314 |
o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
3315 |
error messages |
error messages |
3326 |
mon_vort3.F to make exch2 friendly with >1 tile per cube face |
mon_vort3.F to make exch2 friendly with >1 tile per cube face |
3327 |
o limit timeave output for hi-res integrations |
o limit timeave output for hi-res integrations |
3328 |
|
|
3329 |
checkpoint52i_post |
checkpoint52i_post (2004/01/21) |
3330 |
o removed CPP_EEOPTIONS.h from verification/*/code |
o removed CPP_EEOPTIONS.h from verification/*/code |
3331 |
o updated the tiling for global_ocean_pressure |
o updated the tiling for global_ocean_pressure |
3332 |
checkpoint52i_pre |
checkpoint52i_pre (2004/01/20) |
3333 |
|
|
3334 |
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
3335 |
the old pkg/aim). |
the old pkg/aim). |
3336 |
|
|
3337 |
checkpoint52h_pre |
checkpoint52h_pre (2004/01/20) |
3338 |
o shortened offending lines in exch2_send_rx?.template |
o shortened offending lines in exch2_send_rx?.template |
3339 |
o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
3340 |
o genmake2: add build & execute test for NetCDF code |
o genmake2: add build & execute test for NetCDF code |
3345 |
metric terms are ignored and it is assumed that |
metric terms are ignored and it is assumed that |
3346 |
there is no sea-ice on cube faces 1, 2, 4, and 5. |
there is no sea-ice on cube faces 1, 2, 4, and 5. |
3347 |
|
|
3348 |
checkpoint52f_post |
checkpoint52f_post (2004/01/09) |
3349 |
o added exch2 cube routines to pkg/exch2 |
o added exch2 cube routines to pkg/exch2 |
3350 |
o modified hs94.cs-32x32x5 to use it |
o modified hs94.cs-32x32x5 to use it |
3351 |
o added new grid files to hs94.cs-32x32x5 |
o added new grid files to hs94.cs-32x32x5 |
3352 |
checkpoint52f_pre |
checkpoint52f_pre (2004/01/07) |
3353 |
|
|
3354 |
checkpoint52e_post |
checkpoint52e_post (2004/01/07) |
3355 |
o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
3356 |
for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
3357 |
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
3359 |
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
3360 |
o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
3361 |
front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
3362 |
checkpoint52e_pre |
checkpoint52e_pre (2004/01/02) |
3363 |
|
|
3364 |
o fix bug in impldiff when Nr=1 or Nr=2. |
o fix bug in impldiff when Nr=1 or Nr=2. |
3365 |
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
3370 |
o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
3371 |
o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
3372 |
|
|
3373 |
checkpoint52d_post |
checkpoint52d_post (2003/12/16) |
3374 |
o re-tiled many expts to allow comparison in multi-processor mode |
o re-tiled many expts to allow comparison in multi-processor mode |
3375 |
- updated output accordingly |
- updated output accordingly |
3376 |
- changed hs94.128x64x5 to use intial T from file rather than use the |
- changed hs94.128x64x5 to use intial T from file rather than use the |
3399 |
o new verification experiment, cpl_aim+ocn: |
o new verification experiment, cpl_aim+ocn: |
3400 |
coupled ocean - AIM atmosphere on cs32 grid. |
coupled ocean - AIM atmosphere on cs32 grid. |
3401 |
|
|
3402 |
checkpoint52d_pre |
checkpoint52d_pre (2003/12/06) |
3403 |
o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
3404 |
o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
3405 |
|
|
3406 |
checkpoint52c_post |
checkpoint52c_post (2003/11/25) |
3407 |
o Fixing OPTIONS files for use of exf: |
o Fixing OPTIONS files for use of exf: |
3408 |
- ALLOW_ECCO not needed |
- ALLOW_ECCO not needed |
3409 |
- ECCO_CPPOPTIONS.h should not be included from |
- ECCO_CPPOPTIONS.h should not be included from |
3417 |
o modified STOREs in GAD_ADVECTION |
o modified STOREs in GAD_ADVECTION |
3418 |
o corrected key comp. for passkey |
o corrected key comp. for passkey |
3419 |
|
|
3420 |
checkpoint52b_post |
checkpoint52b_post (2003/11/23) |
3421 |
o new version: "thsice" of thermodynamic sea-ice pkg: |
o new version: "thsice" of thermodynamic sea-ice pkg: |
3422 |
- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
3423 |
- modify fluxes but do not change theta directly; |
- modify fluxes but do not change theta directly; |
3425 |
- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
3426 |
+ output_thsice.txt to test thsice & bulk_force pkgs. |
+ output_thsice.txt to test thsice & bulk_force pkgs. |
3427 |
o put back grid & coriolis monitor output. |
o put back grid & coriolis monitor output. |
3428 |
checkpoint52b_pre |
checkpoint52b_pre (2003/11/23) |
3429 |
|
|
3430 |
o call "do_the_model_io" at the beginning (=> dump initial state) |
o call "do_the_model_io" at the beginning (=> dump initial state) |
3431 |
o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
3435 |
o default tamc.h in pkg/autodiff supposed to crash |
o default tamc.h in pkg/autodiff supposed to crash |
3436 |
to ensure proper customization |
to ensure proper customization |
3437 |
|
|
3438 |
checkpoint52a_post |
checkpoint52a_post (2003/11/17) |
3439 |
o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
3440 |
- moved surfaceTendencyTice from pkg/seaice to main code |
- moved surfaceTendencyTice from pkg/seaice to main code |
3441 |
- subroutine FREEZE_SURFACE now limits only surface temperature |
- subroutine FREEZE_SURFACE now limits only surface temperature |
3450 |
snapshot file was missing some ad-variables, |
snapshot file was missing some ad-variables, |
3451 |
but no warning issued by TAF |
but no warning issued by TAF |
3452 |
|
|
3453 |
checkpoint52a_pre |
checkpoint52a_pre (2003/11/12) |
3454 |
o some bug fixes for #undef REAL4_IS_SLOW |
o some bug fixes for #undef REAL4_IS_SLOW |
3455 |
|
|
3456 |
checkpoint52 = ecco_c52_e35 |
checkpoint52 = ecco_c52_e35 |
3457 |
o after testing adjoints of checkpoint51u_post |
o after testing adjoints of checkpoint51u_post |
3458 |
|
|
3459 |
checkpoint51u_post |
checkpoint51u_post (2003/11/06) |
3460 |
o this is the post-merge tag of the ecco-branch |
o this is the post-merge tag of the ecco-branch |
3461 |
(needs another clean checkout and re-testing) |
(needs another clean checkout and re-testing) |
3462 |
o various natl_box_adjoint configs and results |
o various natl_box_adjoint configs and results |
3471 |
(new namelist ecco_cost_nml) |
(new namelist ecco_cost_nml) |
3472 |
o in ctrl/ cleaned some cross-dependencies and updated CPP options |
o in ctrl/ cleaned some cross-dependencies and updated CPP options |
3473 |
|
|
3474 |
checkpoint51t_post |
checkpoint51t_post (2003/11/04) |
3475 |
o this is the pre-merge tag of the ecco-branch |
o this is the pre-merge tag of the ecco-branch |
3476 |
|
|
3477 |
checkpoint51s_post |
checkpoint51s_post (2003/11/04) |
3478 |
o cleanup: removed various obsolete #define-s |
o cleanup: removed various obsolete #define-s |
3479 |
o pkg/grdchk |
o pkg/grdchk |
3480 |
- renamed 'ph-grd 3' to 'grad-res' |
- renamed 'ph-grd 3' to 'grad-res' |
3483 |
- additional high-precision output for testreport |
- additional high-precision output for testreport |
3484 |
(grep for 'precision_grdchk_result') |
(grep for 'precision_grdchk_result') |
3485 |
|
|
3486 |
checkpoint51r_post |
checkpoint51r_post (2003/11/03) |
3487 |
o cleaned up or removed CPP_OPTIONS.h files |
o cleaned up or removed CPP_OPTIONS.h files |
3488 |
o updated results for some of the tests to reflect the new |
o updated results for some of the tests to reflect the new |
3489 |
optfiles (-ieee: -O0 instead of -O3) |
optfiles (-ieee: -O0 instead of -O3) |
3490 |
|
|
3491 |
checkpoint51q_post |
checkpoint51q_post (2003/10/30) |
3492 |
o cd_code: |
o cd_code: |
3493 |
- moved cd_scheme.F -> cd_code_scheme.F |
- moved cd_scheme.F -> cd_code_scheme.F |
3494 |
- separate read_checkpoint from cd_code_ini_vars.F |
- separate read_checkpoint from cd_code_ini_vars.F |
3504 |
- confined inclusion of AD_CONFIG.h to where necessary. |
- confined inclusion of AD_CONFIG.h to where necessary. |
3505 |
o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
3506 |
|
|
3507 |
checkpoint51p_post |
checkpoint51p_post (2003/10/30) |
3508 |
o create initial cd_code package |
o create initial cd_code package |
3509 |
- WARNING: the initialization of fields within packages |
- WARNING: the initialization of fields within packages |
3510 |
is broken because INI_FIELDS (where READ_CHECKPOINT is |
is broken because INI_FIELDS (where READ_CHECKPOINT is |
3519 |
o cleanup verification/*/code/GMREDI_OPTIONS.h |
o cleanup verification/*/code/GMREDI_OPTIONS.h |
3520 |
o cleanup testreport |
o cleanup testreport |
3521 |
|
|
3522 |
checkpoint51o_post |
checkpoint51o_post (2003/10/27) |
3523 |
o bringing AD-related verif's up to date with genmake2 |
o bringing AD-related verif's up to date with genmake2 |
3524 |
- carbon/ |
- carbon/ |
3525 |
- global_ocean.90x40x15/ |
- global_ocean.90x40x15/ |
3540 |
o helping TAF to recognize dependency on kUp for |
o helping TAF to recognize dependency on kUp for |
3541 |
fVerU, fVerV |
fVerU, fVerV |
3542 |
o Replacing delZ by delR in pkg/ctrl/ |
o Replacing delZ by delR in pkg/ctrl/ |
3543 |
checkpoint51o_pre |
checkpoint51o_pre (2003/10/24) |
3544 |
|
|
3545 |
o undid all of cp51 pending some cleanups and discussion |
o undid all of cp51 pending some cleanups and discussion |
3546 |
o added the [#include "AD_CONFIG.h"] statement to all files that need |
o added the [#include "AD_CONFIG.h"] statement to all files that need |
3548 |
o re-worked the build logic in genmake2 to support AD_CONFIG.h |
o re-worked the build logic in genmake2 to support AD_CONFIG.h |
3549 |
o removed tools/genmake since it no longer works |
o removed tools/genmake since it no longer works |
3550 |
|
|
3551 |
checkpoint51n_post |
checkpoint51n_post (2003/10/23) |
3552 |
o modifications to make FREEZE flux visible to pkg/kpp |
o modifications to make FREEZE flux visible to pkg/kpp |
3553 |
- moved surfaceTendencyTice from pkg/seaice to main code |
- moved surfaceTendencyTice from pkg/seaice to main code |
3554 |
- FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP |
- FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP |
3557 |
global_ocean.cs32x15, and global_with_exf) |
global_ocean.cs32x15, and global_with_exf) |
3558 |
o added surface flux output variables to TIMEAVE_STATVARS |
o added surface flux output variables to TIMEAVE_STATVARS |
3559 |
|
|
3560 |
checkpoint51n_pre |
checkpoint51n_pre (2003/10/23) |
3561 |
o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F |
o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F |
3562 |
o added [#include "AD_CONFIG.h"] to all files that use the following |
o added [#include "AD_CONFIG.h"] to all files that use the following |
3563 |
defines: |
defines: |
3565 |
- ALLOW_TANGENTLINEAR_RUN |
- ALLOW_TANGENTLINEAR_RUN |
3566 |
- ALLOW_ECCO_OPTIMIZATION |
- ALLOW_ECCO_OPTIMIZATION |
3567 |
|
|
3568 |
checkpoint51m_post |
checkpoint51m_post (2003/10/21) |
3569 |
o incorporating changes to get TAMC/TAF working in genmake2 |
o incorporating changes to get TAMC/TAF working in genmake2 |
3570 |
- added new TAMC/TAF targets to the Makefile |
- added new TAMC/TAF targets to the Makefile |
3571 |
- various cleanups related to package handling |
- various cleanups related to package handling |
3572 |
- these changes should have no impact on the forward model |
- these changes should have no impact on the forward model |
3573 |
|
|
3574 |
checkpoint51l_post |
checkpoint51l_post (2003/10/20) |
3575 |
o changes to pkg/cal and pkg/exf that allow and speed-up long integrations |
o changes to pkg/cal and pkg/exf that allow and speed-up long integrations |
3576 |
- faster algorithm for cal_addtime.F |
- faster algorithm for cal_addtime.F |
3577 |
- higher precision arithmetic, where needed |
- higher precision arithmetic, where needed |
3578 |
- pkg/exf *startdate variables changed from calendar date to |
- pkg/exf *startdate variables changed from calendar date to |
3579 |
model integration time |
model integration time |
3580 |
|
|
3581 |
checkpoint51l_pre |
checkpoint51l_pre (2003/10/17) |
3582 |
o add salt flux to forcing fields (used when salty sea-ice forms or melts) |
o add salt flux to forcing fields (used when salty sea-ice forms or melts) |
3583 |
o enable to apply restoring on S & T only in a latitude band. |
o enable to apply restoring on S & T only in a latitude band. |
3584 |
o update output (external_forcing_surf modif. change truncation errors) |
o update output (external_forcing_surf modif. change truncation errors) |
3585 |
global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box |
global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box |
3586 |
|
|
3587 |
checkpoint51k_post |
checkpoint51k_post (2003/10/16) |
3588 |
o change default to: useNHMTerms=.FALSE. |
o change default to: useNHMTerms=.FALSE. |
3589 |
- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
3590 |
adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
3598 |
removed the #include "PACKAGES_CONFIG.h" from it |
removed the #include "PACKAGES_CONFIG.h" from it |
3599 |
o fix a bug in mom_fluxform (from chk51j_post) |
o fix a bug in mom_fluxform (from chk51j_post) |
3600 |
|
|
3601 |
checkpoint51j_post |
checkpoint51j_post (2003/10/10) |
3602 |
o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
3603 |
o adjusted some flow directives (dynamics, thermodynamics) |
o adjusted some flow directives (dynamics, thermodynamics) |
3604 |
o added cubed-sphere case to test cost function |
o added cubed-sphere case to test cost function |
3612 |
- pkg_ad_diff.list |
- pkg_ad_diff.list |
3613 |
- pkg_ad_check_lev?_dir.h |
- pkg_ad_check_lev?_dir.h |
3614 |
|
|
3615 |
checkpoint51i_post |
checkpoint51i_post (2003/10/09) |
3616 |
o merge of the branch-genmake2 |
o merge of the branch-genmake2 |
3617 |
- knowingly breaks the older genmake |
- knowingly breaks the older genmake |
3618 |
- automatic generation of all ALLOW_${PKG_NAME} defines |
- automatic generation of all ALLOW_${PKG_NAME} defines |
3619 |
- new testreport supersedes older testscript |
- new testreport supersedes older testscript |
3620 |
o large number of package inclusion and header cleanups |
o large number of package inclusion and header cleanups |
3621 |
checkpoint51i_pre |
checkpoint51i_pre (2003/10/08) |
3622 |
|
|
3623 |
o new output for adjoin of global ocean vector invariant |
o new output for adjoin of global ocean vector invariant |
3624 |
o fix for checkpoint of thermodynamic seaice and bulk_force |
o fix for checkpoint of thermodynamic seaice and bulk_force |
3630 |
o modifications to clean up dic pkg |
o modifications to clean up dic pkg |
3631 |
o add pkg/cfc |
o add pkg/cfc |
3632 |
|
|
3633 |
checkpoint51g_post |
checkpoint51g_post (2003/10/02) |
3634 |
o provide links for ARPACK and ADM*TLM |
o provide links for ARPACK and ADM*TLM |
3635 |
o start removing verification/vero/ |
o start removing verification/vero/ |
3636 |
o update AD-related stuff |
o update AD-related stuff |
3638 |
o adding to verification/global_ocean.90x40x15/ adjoint of |
o adding to verification/global_ocean.90x40x15/ adjoint of |
3639 |
vector invariant setup |
vector invariant setup |
3640 |
|
|
3641 |
checkpoint51f_post |
checkpoint51f_post (2003/10/02) |
3642 |
o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
3643 |
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
3644 |
of tracer Green's fucntions for ocean inversion project. |
of tracer Green's fucntions for ocean inversion project. |
3645 |
|
|
3646 |
checkpoint51f_pre |
checkpoint51f_pre (2003/08/07) |
3647 |
o Added on-the-fly spatial interpolation capability |
o Added on-the-fly spatial interpolation capability |
3648 |
"USE_EXF_INTERPOLATION" to pkg/exf. |
"USE_EXF_INTERPOLATION" to pkg/exf. |
3649 |
- This is a temporary Cartesian-grid hack until |
- This is a temporary Cartesian-grid hack until |
3655 |
and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
3656 |
non-local transport term. |
non-local transport term. |
3657 |
|
|
3658 |
checkpoint51e_post |
checkpoint51e_post (2003/08/03) |
3659 |
o pkg/mom_vecinv: |
o pkg/mom_vecinv: |
3660 |
- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
3661 |
- add time-ave diagnostic of vorticity advection. |
- add time-ave diagnostic of vorticity advection. |
3665 |
o land pkg: read initial state from files. |
o land pkg: read initial state from files. |
3666 |
o AIM : add stratospheric drag in the upper level |
o AIM : add stratospheric drag in the upper level |
3667 |
|
|
3668 |
checkpoint51d_post |
checkpoint51d_post (2003/07/18) |
3669 |
o change function ILNBLNK (=> last non-blank char.) to return zero |
o change function ILNBLNK (=> last non-blank char.) to return zero |
3670 |
(instead of the string length) when the string. char is empty |
(instead of the string length) when the string. char is empty |
3671 |
o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
3678 |
- new active_file_loc... and mdsio_..._loc routines |
- new active_file_loc... and mdsio_..._loc routines |
3679 |
- affected packages: autodiff, ctrl, grdchk, mdsio |
- affected packages: autodiff, ctrl, grdchk, mdsio |
3680 |
|
|
3681 |
checkpoint51c_post |
checkpoint51c_post (2003/07/08) |
3682 |
o introducing integer flag debugLevel |
o introducing integer flag debugLevel |
3683 |
- debLevZero: suppress all output |
- debLevZero: suppress all output |
3684 |
- debLevA: standard |
- debLevA: standard |
3701 |
- checked tapelev/comlev recomputations: OK |
- checked tapelev/comlev recomputations: OK |
3702 |
<<<checkpoint51b_pre |
<<<checkpoint51b_pre |
3703 |
|
|
3704 |
checkpoint51a_post |
checkpoint51a_post (2003/06/25) |
3705 |
o added code for biogeochemistry package |
o added code for biogeochemistry package |
3706 |
- new pkgs: dic, gchem |
- new pkgs: dic, gchem |
3707 |
- new subroutine in ptracers |
- new subroutine in ptracers |
3708 |
o modify code for biogeo packages |
o modify code for biogeo packages |
3709 |
- in model/src and pkg/ptracers |
- in model/src and pkg/ptracers |
3710 |
|
|
3711 |
checkpoint51 |
checkpoint51 (2003/06/24) |
3712 |
o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
3713 |
- autodiff, ctrl, exf, grdchk, seaice |
- autodiff, ctrl, exf, grdchk, seaice |
3714 |
kept separate packages |
kept separate packages |
3716 |
o updating verification/internal_wave, verification/lab_sea |
o updating verification/internal_wave, verification/lab_sea |
3717 |
(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
3718 |
|
|
3719 |
checkpoint50i_post |
checkpoint50i_post (2003/06/23) |
3720 |
o Preparing next differentiable checkpoint and sync |
o Preparing next differentiable checkpoint and sync |
3721 |
of MAIN vs. ecco-branch |
of MAIN vs. ecco-branch |
3722 |
- 1st step: this one is differentiable |
- 1st step: this one is differentiable |
3723 |
- 2nd step: next(! not this) checkpoint will have updated packages |
- 2nd step: next(! not this) checkpoint will have updated packages |
3724 |
from ecco-branch) |
from ecco-branch) |
3725 |
|
|
3726 |
checkpoint50h_post |
checkpoint50h_post (2003/06/20) |
3727 |
o new package "land": provide surface BC for AIM. |
o new package "land": provide surface BC for AIM. |
3728 |
o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
3729 |
o AIM: use true log-P extrapolation for near surface temp (= as in |
o AIM: use true log-P extrapolation for near surface temp (= as in |
3732 |
o somewhat cleaned package initialisation sequence for |
o somewhat cleaned package initialisation sequence for |
3733 |
ctrl/ cost/ ecco/ in packages_... routines |
ctrl/ cost/ ecco/ in packages_... routines |
3734 |
|
|
3735 |
checkpoint50g_post |
checkpoint50g_post (2003/05/23) |
3736 |
o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
3737 |
- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
3738 |
- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
3739 |
made the default because of faster convergence than ADI |
made the default because of faster convergence than ADI |
3740 |
|
|
3741 |
checkpoint50f_post |
checkpoint50f_post (2003/05/23) |
3742 |
o exf totally restructured |
o exf totally restructured |
3743 |
- replaced all exf_set_ routines by one generic exf_set_gen.F |
- replaced all exf_set_ routines by one generic exf_set_gen.F |
3744 |
and made sure it's still differentiable |
and made sure it's still differentiable |
3746 |
- exf_inscal_/exf_outscal_ suffixes consistent with field names |
- exf_inscal_/exf_outscal_ suffixes consistent with field names |
3747 |
- updated adjoint/makefile and relevant verif. accordingly |
- updated adjoint/makefile and relevant verif. accordingly |
3748 |
|
|
3749 |
checkpoint50f_pre |
checkpoint50f_pre (2003/05/23) |
3750 |
o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
3751 |
+ change Evap over land. (update aim.5l_cs output) |
+ change Evap over land. (update aim.5l_cs output) |
3752 |
o added missing .cvsignores and made uniform across expts |
o added missing .cvsignores and made uniform across expts |
3756 |
o new fn in pkg/monitor to stop model if solution grows too big |
o new fn in pkg/monitor to stop model if solution grows too big |
3757 |
o removed lots of single quotes from comments |
o removed lots of single quotes from comments |
3758 |
|
|
3759 |
checkpoint50e_post |
checkpoint50e_post (2003/05/14) |
3760 |
o make KPP work with PTRACERS |
o make KPP work with PTRACERS |
3761 |
- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
3762 |
nearly a copy of kpp_transport_s |
nearly a copy of kpp_transport_s |
3763 |
- there is no analogue to SurfaceTendencyS, so I have to use |
- there is no analogue to SurfaceTendencyS, so I have to use |
3764 |
gPtr(of the surface layer) instead |
gPtr(of the surface layer) instead |
3765 |
o add a new platform SunFire+mpi (SunFire 15000) to genmake |
o add a new platform SunFire+mpi (SunFire 15000) to genmake |
3766 |
checkpoint50e_pre |
checkpoint50e_pre (2003/05/13) |
3767 |
|
|
3768 |
checkpoint50d_post |
checkpoint50d_post (2003/05/13) |
3769 |
o change kpp output from multiple-record state files to single-record state |
o change kpp output from multiple-record state files to single-record state |
3770 |
files analogous to write_state.F |
files analogous to write_state.F |
3771 |
o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
3772 |
analogous to the cg2d-related output. |
analogous to the cg2d-related output. |
3773 |
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
3774 |
so that writing to internal file fn (with length 512) fails. |
so that writing to internal file fn (with length 512) fails. |
3775 |
checkpoint50d_pre |
checkpoint50d_pre (2003/05/12) |
3776 |
|
|
3777 |
checkpoint50c_post |
checkpoint50c_post (2003/05/12) |
3778 |
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
3779 |
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
3780 |
o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
3781 |
o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
3782 |
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
3783 |
|
|
3784 |
checkpoint50c_pre |
checkpoint50c_pre (2003/04/30) |
3785 |
Merging from release1_p13: |
Merging from release1_p13: |
3786 |
o bug fix for pkg/seaice dynamic solver |
o bug fix for pkg/seaice dynamic solver |
3787 |
o Added SEAICE_initialHEFF to pkg/seaice |
o Added SEAICE_initialHEFF to pkg/seaice |
3788 |
|
|
3789 |
checkpoint50b_post |
checkpoint50b_post (2003/04/17) |
3790 |
o store u*,v* in gU,V instead of in guNm1,gvNm1 |
o store u*,v* in gU,V instead of in guNm1,gvNm1 |
3791 |
o in order to put the momForcing out of the Adams-Bashforth: |
o in order to put the momForcing out of the Adams-Bashforth: |
3792 |
move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
3795 |
o re-generate output for highly sensitive test-exp: |
o re-generate output for highly sensitive test-exp: |
3796 |
global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
3797 |
|
|
3798 |
checkpoint50b_pre |
checkpoint50b_pre (2003/04/17) |
3799 |
o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
3800 |
o corrected CPP option mismatch in exf_Bulk... functions for case |
o corrected CPP option mismatch in exf_Bulk... functions for case |
3801 |
#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
3802 |
|
|
3803 |
checkpoint50a_post |
checkpoint50a_post (2003/03/21) |
3804 |
o Bug fix for merging between c50 and KPP. |
o Bug fix for merging between c50 and KPP. |
3805 |
ikey was passed from thermodynamics to kpp_calc via |
ikey was passed from thermodynamics to kpp_calc via |
3806 |
common block rather than being recomputed in kpp_calc, |
common block rather than being recomputed in kpp_calc, |
3807 |
in contradiction with new key itdkey. |
in contradiction with new key itdkey. |
3808 |
New key ikppkey created, and tamc.h headers updated. |
New key ikppkey created, and tamc.h headers updated. |
3809 |
|
|
3810 |
checkpoint50 |
checkpoint50 (2003/03/08) |
3811 |
- 2nd step of merge with ecco-branch: |
- 2nd step of merge with ecco-branch: |
3812 |
merge changes in ecco-branch back into main trunk |
merge changes in ecco-branch back into main trunk |
3813 |
- bug fix in find_alpha |
- bug fix in find_alpha |
3815 |
- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
3816 |
- merged some sliced AD support routines |
- merged some sliced AD support routines |
3817 |
|
|
3818 |
checkpoint49 |
checkpoint49 (2003/03/06) |
3819 |
merged from ecco-branch: |
merged from ecco-branch: |
3820 |
o exf: |
o exf: |
3821 |
- Enable initialisation of forcing fields to constant |
- Enable initialisation of forcing fields to constant |
3853 |
(see MITgcm manual). |
(see MITgcm manual). |
3854 |
o cal: synchronized between MAIN and ecco-branch |
o cal: synchronized between MAIN and ecco-branch |
3855 |
|
|
3856 |
checkpoint48i_post |
checkpoint48i_post (2003/03/05) |
3857 |
o Changes to restore differentiability of code w.r.t. previous tag |
o Changes to restore differentiability of code w.r.t. previous tag |
3858 |
(mostly adding new routines to make list and replacing |
(mostly adding new routines to make list and replacing |
3859 |
pressure by totPhiHyd). |
pressure by totPhiHyd). |
3871 |
tbar, sbar, psbar, which should not be reinitialised; |
tbar, sbar, psbar, which should not be reinitialised; |
3872 |
only relevant for ecco-branch) |
only relevant for ecco-branch) |
3873 |
|
|
3874 |
checkpoint48h_post |
checkpoint48h_post (2003/02/28) |
3875 |
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
3876 |
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
3877 |
o Added SEAICE_initialHEFF to pkg/seaice |
o Added SEAICE_initialHEFF to pkg/seaice |
3878 |
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
3879 |
|
|
3880 |
checkpoint48g_post |
checkpoint48g_post (2003/02/18) |
3881 |
--- EOS: |
--- EOS: |
3882 |
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
3883 |
store total Potential in totPhyHyd for diagnostics & EOS. |
store total Potential in totPhyHyd for diagnostics & EOS. |
3891 |
( changes results of ideal_2D_oce ) |
( changes results of ideal_2D_oce ) |
3892 |
o includes r* 2nd term in potential gradient. |
o includes r* 2nd term in potential gradient. |
3893 |
|
|
3894 |
checkpoint48f_post |
checkpoint48f_post (2003/02/18) |
3895 |
Merging from release1_p12: |
Merging from release1_p12: |
3896 |
o Modifications for using pkg/exf with pkg/seaice |
o Modifications for using pkg/exf with pkg/seaice |
3897 |
- improved description of the various forcing configurations |
- improved description of the various forcing configurations |
3919 |
- adjoint-friendly modifications |
- adjoint-friendly modifications |
3920 |
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
3921 |
|
|
3922 |
checkpoint48e_post |
checkpoint48e_post (2003/02/12) |
3923 |
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
3924 |
o dynamics: change definition of computational domain & adapt mom_fluxform |
o dynamics: change definition of computational domain & adapt mom_fluxform |
3925 |
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
3930 |
inverted_barometer solid-body.cs-32x32x1 |
inverted_barometer solid-body.cs-32x32x1 |
3931 |
(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
3932 |
|
|
3933 |
checkpoint48d_post |
checkpoint48d_post (2003/02/09) |
3934 |
o in preparation for r*: |
o in preparation for r*: |
3935 |
a) use pre-computed gradient of hydrostatic potential: |
a) use pre-computed gradient of hydrostatic potential: |
3936 |
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
3938 |
=> affects results of glob_oce_pressure (different truncation error) |
=> affects results of glob_oce_pressure (different truncation error) |
3939 |
update output.txt of ideal_2D_oce & global_ocean_pressure |
update output.txt of ideal_2D_oce & global_ocean_pressure |
3940 |
|
|
3941 |
checkpoint48d_pre |
checkpoint48d_pre (2003/02/08) |
3942 |
o in preparation for r*: |
o in preparation for r*: |
3943 |
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
3944 |
pass the 2 comp. of the grad. as arguments to momentum S/R. |
pass the 2 comp. of the grad. as arguments to momentum S/R. |
3945 |
but for the moment, only used if it does not change the results. |
but for the moment, only used if it does not change the results. |
3946 |
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
3947 |
|
|
3948 |
checkpoint48c_post |
checkpoint48c_post (2003/02/06) |
3949 |
Modifications in treatment of initial flux forcing controls |
Modifications in treatment of initial flux forcing controls |
3950 |
to avoid extra storing of flux fields. |
to avoid extra storing of flux fields. |
3951 |
|
|
3952 |
checkpoint48c_pre |
checkpoint48c_pre (2003/01/21) |
3953 |
o Added tidal_basin_2d experiment (currently 1D!) |
o Added tidal_basin_2d experiment (currently 1D!) |
3954 |
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
3955 |
|
|
3956 |
checkpoint48b_post |
checkpoint48b_post (2003/01/27) |
3957 |
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
3958 |
(modification to pressure gradient not yet implemented) |
(modification to pressure gradient not yet implemented) |
3959 |
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
3960 |
(for U & V) that are used for vertical advection of momentum. |
(for U & V) that are used for vertical advection of momentum. |
3961 |
|
|
3962 |
checkpoint48a_post |
checkpoint48a_post (2003/01/24) |
3963 |
o In preparation for r*, use temp. array to compute vertical transport |
o In preparation for r*, use temp. array to compute vertical transport |
3964 |
in flux-form momentum pkg. => change results of few test-exp. |
in flux-form momentum pkg. => change results of few test-exp. |
3965 |
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
3966 |
lab_sea, natl_box & plume_on_slope |
lab_sea, natl_box & plume_on_slope |
3967 |
|
|
3968 |
checkpoint48 |
checkpoint48 (2003/01/23) |
3969 |
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
3970 |
|
|
3971 |
checkpoint47j_post |
checkpoint47j_post (2003/01/21) |
3972 |
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
3973 |
o moved adexch from forward_step to addummy_in_stepping |
o moved adexch from forward_step to addummy_in_stepping |
3974 |
o added exch in ctrl_map_... |
o added exch in ctrl_map_... |
3987 |
re-activated full calculation of taperfct for case 'ac02' |
re-activated full calculation of taperfct for case 'ac02' |
3988 |
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
3989 |
|
|
3990 |
checkpoint47i_post |
checkpoint47i_post (2003/01/13) |
3991 |
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
3992 |
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
3993 |
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
4003 |
S/R gmredi_slope_psi should be cleaned |
S/R gmredi_slope_psi should be cleaned |
4004 |
o verification/carbon now has exactConserv=.TRUE. |
o verification/carbon now has exactConserv=.TRUE. |
4005 |
|
|
4006 |
checkpoint47g_post |
checkpoint47g_post (2003/01/10) |
4007 |
o time-average AIM output: becomes independent from statvars time-average |
o time-average AIM output: becomes independent from statvars time-average |
4008 |
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
4009 |
o After TAF bug fix: |
o After TAF bug fix: |
4029 |
in conjunction with data.gmredi parameters to be checked in |
in conjunction with data.gmredi parameters to be checked in |
4030 |
in a few minutes under verification/carbon/code/ |
in a few minutes under verification/carbon/code/ |
4031 |
|
|
4032 |
checkpoint47f_post |
checkpoint47f_post (2002/12/28) |
4033 |
Merging from release1_p10: |
Merging from release1_p10: |
4034 |
o modifications for using pkg/exf with pkg/seaice |
o modifications for using pkg/exf with pkg/seaice |
4035 |
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
4041 |
- verification/lab_sea default experiment now uses |
- verification/lab_sea default experiment now uses |
4042 |
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
4043 |
|
|
4044 |
checkpoint47e_post |
checkpoint47e_post (2002/12/27) |
4045 |
o created a tag prior to creating a branch |
o created a tag prior to creating a branch |
4046 |
|
|
4047 |
checkpoint47d_post |
checkpoint47d_post (2002/12/16) |
4048 |
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
4049 |
at the bottom boundary had an erroneous half slip boundary condition |
at the bottom boundary had an erroneous half slip boundary condition |
4050 |
o added bottom drag and no slip boundary condition capabilities to |
o added bottom drag and no slip boundary condition capabilities to |
4051 |
oceanic pressure coordinates code |
oceanic pressure coordinates code |
4052 |
o added new verification experiment global_ocean_pressure, this experiment is |
o added new verification experiment global_ocean_pressure, this experiment is |
4053 |
also described in the tutorial section of the manual |
also described in the tutorial section of the manual |
4054 |
checkpoint47d_pre |
checkpoint47d_pre (2002/12/16) |
4055 |
|
|
4056 |
checkpoint47c_post |
checkpoint47c_post (2002/12/16) |
4057 |
o Added a verification experiment for a global cubed-sphere ocean run |
o Added a verification experiment for a global cubed-sphere ocean run |
4058 |
- verification/global_ocean.cubed32x32x30 |
- verification/global_ocean.cubed32x32x30 |
4059 |
- uses pkg/therm_seaice and pkg/bulk_forcing |
- uses pkg/therm_seaice and pkg/bulk_forcing |
4065 |
NOTES: requires option NONLIN_FRSURF to be "#define". |
NOTES: requires option NONLIN_FRSURF to be "#define". |
4066 |
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
4067 |
|
|
4068 |
checkpoint47b_post |
checkpoint47b_post (2002/12/05) |
4069 |
Merging from release1_p9: |
Merging from release1_p9: |
4070 |
o pkg/seaice |
o pkg/seaice |
4071 |
- removed GOTO's and added taf directives |
- removed GOTO's and added taf directives |
4082 |
- added missing matlab routines |
- added missing matlab routines |
4083 |
- added test of thermodynamics parallelization |
- added test of thermodynamics parallelization |
4084 |
|
|
4085 |
checkpoint47a_post |
checkpoint47a_post (2002/11/23) |
4086 |
o new pkg: aim_v23 |
o new pkg: aim_v23 |
4087 |
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
4088 |
for now, keep the same surface forcing as before. |
for now, keep the same surface forcing as before. |
4099 |
- Two ifdef statements for compile time, |
- Two ifdef statements for compile time, |
4100 |
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
4101 |
|
|
4102 |
checkpoint47 |
checkpoint47 (2002/11/15) |
4103 |
differentiable version of checkpoint46n_post |
differentiable version of checkpoint46n_post |
4104 |
o bug fix in quasihydrostaticterms |
o bug fix in quasihydrostaticterms |
4105 |
o * "clean" adjoint code (in terms of extensive recomputations) |
o * "clean" adjoint code (in terms of extensive recomputations) |
4128 |
- #define GM_VISBECK_VARIABLE_K |
- #define GM_VISBECK_VARIABLE_K |
4129 |
- GM_taper_scheme = 'ldd97' |
- GM_taper_scheme = 'ldd97' |
4130 |
|
|
4131 |
checkpoint46n_post |
checkpoint46n_post (2002/11/12) |
4132 |
Merging from release1_p8: |
Merging from release1_p8: |
4133 |
o verification/natl_box: |
o verification/natl_box: |
4134 |
updating new external_fields_load routine |
updating new external_fields_load routine |
4182 |
the exf (and cal) package instead of the |
the exf (and cal) package instead of the |
4183 |
external_fields_load routine (cf README file). |
external_fields_load routine (cf README file). |
4184 |
|
|
4185 |
checkpoint46m_post |
checkpoint46m_post (2002/11/07) |
4186 |
o modified testscript to return -- when there are no lines of "%MON" output |
o modified testscript to return -- when there are no lines of "%MON" output |
4187 |
o added new flag "quasiHydrostatic" for QH mode |
o added new flag "quasiHydrostatic" for QH mode |
4188 |
and new routine quasihydrostaticterms() |
and new routine quasihydrostaticterms() |
4195 |
o removed gravitySign from PARM04 |
o removed gravitySign from PARM04 |
4196 |
o switched to g77/ifc from pgf77 in aim experiments |
o switched to g77/ifc from pgf77 in aim experiments |
4197 |
|
|
4198 |
checkpoint46l_post |
checkpoint46l_post (2002/11/01) |
4199 |
o made convective adjustment work with pressure coordinates: |
o made convective adjustment work with pressure coordinates: |
4200 |
- changed the direction of k-loop in convective_adjustment.F for the |
- changed the direction of k-loop in convective_adjustment.F for the |
4201 |
case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
4208 |
at the beginning of find_rho, find_alpha, and find_beta, does a |
at the beginning of find_rho, find_alpha, and find_beta, does a |
4209 |
check of the entire slice, if CPP-option |
check of the entire slice, if CPP-option |
4210 |
CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
4211 |
checkpoint46l_pre |
checkpoint46l_pre (2002/10/23) |
4212 |
|
|
4213 |
checkpoint46k_post |
checkpoint46k_post (2002/10/23) |
4214 |
o fixed the verification/global_ocean.90x40x15 experiment: |
o fixed the verification/global_ocean.90x40x15 experiment: |
4215 |
- new bathymetry (the world according to A., JMC, and M.) |
- new bathymetry (the world according to A., JMC, and M.) |
4216 |
- new initial fields and forcing fields (*.bin files) |
- new initial fields and forcing fields (*.bin files) |
4224 |
- read AIM physics parameters from a file (data.aimphys) |
- read AIM physics parameters from a file (data.aimphys) |
4225 |
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
4226 |
|
|
4227 |
checkpoint46j_post |
checkpoint46j_post (2002/10/07) |
4228 |
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
4229 |
o move wVel computation at the end of the time step, in S/R integr_continuity |
o move wVel computation at the end of the time step, in S/R integr_continuity |
4230 |
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
4231 |
o update timeave pkg for wVel diagnostic. |
o update timeave pkg for wVel diagnostic. |
4232 |
checkpoint46j_pre |
checkpoint46j_pre (2002/09/27) |
4233 |
|
|
4234 |
checkpoint46i_post |
checkpoint46i_post (2002/09/25) |
4235 |
o Clean up AIM package (and keep the results unchanged): |
o Clean up AIM package (and keep the results unchanged): |
4236 |
include CPP_OPTION and use IMPLICT NONE in all routines ; |
include CPP_OPTION and use IMPLICT NONE in all routines ; |
4237 |
declare all the variables _RL ; use _d 0 for all numerical constants. |
declare all the variables _RL ; use _d 0 for all numerical constants. |
4238 |
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
4239 |
|
|
4240 |
checkpoint46h_post |
checkpoint46h_post (2002/09/25) |
4241 |
o cleaned up the use of rhoNil and rhoConst. |
o cleaned up the use of rhoNil and rhoConst. |
4242 |
- rhoNil should only appear in the LINEAR equation of state, everywhere |
- rhoNil should only appear in the LINEAR equation of state, everywhere |
4243 |
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
4247 |
value is 999.8 kg/m^3 |
value is 999.8 kg/m^3 |
4248 |
o cleanup up external_forcing.F and external_forcing_surf.F |
o cleanup up external_forcing.F and external_forcing_surf.F |
4249 |
- can now be used by both OCEANIC and OCEANICP |
- can now be used by both OCEANIC and OCEANICP |
4250 |
checkpoint46h_pre |
checkpoint46h_pre (2002/09/18) |
4251 |
|
|
4252 |
Added code to convert surface volume flux (fresh water) into |
Added code to convert surface volume flux (fresh water) into |
4253 |
a mass flux when using P coordinates in the ocean (OCEANICP). |
a mass flux when using P coordinates in the ocean (OCEANICP). |
4254 |
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
4255 |
|
|
4256 |
checkpoint46g_post |
checkpoint46g_post (2002/09/18) |
4257 |
o Include a new diagnostic variable phiHydLow for the ocean model |
o Include a new diagnostic variable phiHydLow for the ocean model |
4258 |
- in z-coordinates, it is the bottom pressure anomaly |
- in z-coordinates, it is the bottom pressure anomaly |
4259 |
- in p-coordinates, it is the sea surface elevation |
- in p-coordinates, it is the sea surface elevation |
4271 |
- removed obsolete 'eqn' from the parameter list. |
- removed obsolete 'eqn' from the parameter list. |
4272 |
o added two new verification experiments: gop and goz |
o added two new verification experiments: gop and goz |
4273 |
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
4274 |
checkpoint46g_pre |
checkpoint46g_pre (2002/09/16) |
4275 |
|
|
4276 |
checkpoint46f_post |
checkpoint46f_post (2002/09/16) |
4277 |
o Enable tangent linear (forward mode) gradient checks: |
o Enable tangent linear (forward mode) gradient checks: |
4278 |
- extended active file handling to g_... files |
- extended active file handling to g_... files |
4279 |
- added TANGENT_SIMULATION to theSimulationMode |
- added TANGENT_SIMULATION to theSimulationMode |
4281 |
o added tangent linear setup in verification/carbon/code_ftl |
o added tangent linear setup in verification/carbon/code_ftl |
4282 |
o added adjoint setup in verification/front_relax/code_ad |
o added adjoint setup in verification/front_relax/code_ad |
4283 |
|
|
4284 |
checkpoint46e_post |
checkpoint46e_post (2002/09/05) |
4285 |
o Added new equation of state -> MDJWF |
o Added new equation of state -> MDJWF |
4286 |
- EOS of McDougall et al., 2002, JAOT, submitted |
- EOS of McDougall et al., 2002, JAOT, submitted |
4287 |
- caveat: the equation of state is only valid for a smaller (more |
- caveat: the equation of state is only valid for a smaller (more |
4290 |
- added more check values for density in check_eos (ini_eos.F), some of |
- added more check values for density in check_eos (ini_eos.F), some of |
4291 |
the old check values are out of the range of the MDJWF-eos, so don't |
the old check values are out of the range of the MDJWF-eos, so don't |
4292 |
expect perfect matches for those |
expect perfect matches for those |
4293 |
checkpoint46e_pre |
checkpoint46e_pre (2002/08/19) |
4294 |
|
|
4295 |
checkpoint46d_post |
checkpoint46d_post (2002/08/19) |
4296 |
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
4297 |
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
4298 |
case of pressure coordinates. eosType='JMD95Z' in |
case of pressure coordinates. eosType='JMD95Z' in |
4299 |
combination with buoyancyRelation='OCEANICP' now causes an error. |
combination with buoyancyRelation='OCEANICP' now causes an error. |
4300 |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
4301 |
in find_alpha/beta. |
in find_alpha/beta. |
4302 |
checkpoint46d_pre |
checkpoint46d_pre (2002/08/15) |
4303 |
|
|
4304 |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
4305 |
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
4306 |
|
|
4307 |
checkpoint46c_post |
checkpoint46c_post (2002/08/15) |
4308 |
o Changes necessary for ocean in p-coordinates |
o Changes necessary for ocean in p-coordinates |
4309 |
- Added new buoyancy relation = 'OCEANICP' |
- Added new buoyancy relation = 'OCEANICP' |
4310 |
- Added new parameters = gravitySign (this used to be contained inside |
- Added new parameters = gravitySign (this used to be contained inside |
4311 |
the factor dRdZ which I added when we first switched to R coordinates). |
the factor dRdZ which I added when we first switched to R coordinates). |
4312 |
X GM/Redi is not compatible (yet) |
X GM/Redi is not compatible (yet) |
4313 |
X bottom drag and no-slip need to be debugged. |
X bottom drag and no-slip need to be debugged. |
4314 |
checkpoint46c_pre |
checkpoint46c_pre (2002/08/07) |
4315 |
|
|
4316 |
checkpoint46b_post |
checkpoint46b_post (2002/08/07) |
4317 |
o Added new equation of state -> JMD95Z and JMD95P |
o Added new equation of state -> JMD95Z and JMD95P |
4318 |
- EOS of Jackett and McDougall, 1995, JAOT |
- EOS of Jackett and McDougall, 1995, JAOT |
4319 |
- moved all EOS parameters into EOS.h |
- moved all EOS parameters into EOS.h |
4322 |
in-situ temperature (see JMD95) |
in-situ temperature (see JMD95) |
4323 |
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
4324 |
unesco.f to be used with POLY3 |
unesco.f to be used with POLY3 |
4325 |
checkpoint46b_pre |
checkpoint46b_pre (2002/07/31) |
4326 |
|
|
4327 |
checkpoint46a_post |
checkpoint46a_post (2002/07/31) |
4328 |
o Added (atmospheric) pressure loading |
o Added (atmospheric) pressure loading |
4329 |
- new field in FFIELDS.h, etc... |
- new field in FFIELDS.h, etc... |
4330 |
- new cpp flag ATMOSPHERIC_LOADING |
- new cpp flag ATMOSPHERIC_LOADING |
4331 |
o Changed hFacC to _hFacC in calc_phi_hyd.F |
o Changed hFacC to _hFacC in calc_phi_hyd.F |
4332 |
o Added SHORTWAVE_HEATING to some files for consistency |
o Added SHORTWAVE_HEATING to some files for consistency |
4333 |
checkpoint46a_pre |
checkpoint46a_pre (2002/07/13) |
4334 |
|
|
4335 |
checkpoint46 |
checkpoint46 (2002/07/13) |
4336 |
further merges from release1_p5 |
further merges from release1_p5 |
4337 |
o new ctrl package |
o new ctrl package |
4338 |
- adopted from ECCO environment to enable optimization |
- adopted from ECCO environment to enable optimization |
4359 |
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
4360 |
o incorporated hooks for sponge layer code (external_forcing.F) |
o incorporated hooks for sponge layer code (external_forcing.F) |
4361 |
|
|
4362 |
checkpoint45d_post |
checkpoint45d_post (2002/07/12) |
4363 |
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
4364 |
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
4365 |
(affects plume_on_slope "cg2d" output) |
(affects plume_on_slope "cg2d" output) |
4373 |
- for each tracer, define internal flag for multiDimAdvection & A-B |
- for each tracer, define internal flag for multiDimAdvection & A-B |
4374 |
o monitor: change definition of KE to check conservation of Energy |
o monitor: change definition of KE to check conservation of Energy |
4375 |
|
|
4376 |
checkpoint45c_post |
checkpoint45c_post (2002/05/30) |
4377 |
o Removed f90 comments ("!") |
o Removed f90 comments ("!") |
4378 |
o Modified initialisations to enable exf package for MITgcm |
o Modified initialisations to enable exf package for MITgcm |
4379 |
(without invoking ECCO_PACKAGE). |
(without invoking ECCO_PACKAGE). |
4381 |
- enable centered differences |
- enable centered differences |
4382 |
- modified format of standard output |
- modified format of standard output |
4383 |
|
|
4384 |
checkpoint45b_post |
checkpoint45b_post (2002/05/30) |
4385 |
o cleaned exchange calls in cg2d |
o cleaned exchange calls in cg2d |
4386 |
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
4387 |
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
4393 |
(corresponding adjustment of TAF tape initialisation). |
(corresponding adjustment of TAF tape initialisation). |
4394 |
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
4395 |
|
|
4396 |
checkpoint45a_post |
checkpoint45a_post (2002/05/01) |
4397 |
o compute Rho over the whole domain (extend iMin,jMin indices) |
o compute Rho over the whole domain (extend iMin,jMin indices) |
4398 |
o specific exchange for X-slice domain (case Ny=1) |
o specific exchange for X-slice domain (case Ny=1) |
4399 |
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
4413 |
(conflict on some platforms, e.g. IBM SP3) |
(conflict on some platforms, e.g. IBM SP3) |
4414 |
o modified carbon verif. |
o modified carbon verif. |
4415 |
|
|
4416 |
checkpoint44h_pre |
checkpoint44h_pre (2002/03/14) |
4417 |
o vertical grid option: allow to put the Interface at the middle between |
o vertical grid option: allow to put the Interface at the middle between |
4418 |
2 cell-centers ; replace delZ in pkg/kpp by drF. |
2 cell-centers ; replace delZ in pkg/kpp by drF. |
4419 |
o GM Advective form: Tracers are advected using the residual transport (= |
o GM Advective form: Tracers are advected using the residual transport (= |
4420 |
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
4421 |
|
|
4422 |
checkpoint44g_post |
checkpoint44g_post (2002/03/05) |
4423 |
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
4424 |
results) ; ifdef missing in thermodynamics.F |
results) ; ifdef missing in thermodynamics.F |
4425 |
|
|
4484 |
o check parameters & config (chkpt44a_pre,post) |
o check parameters & config (chkpt44a_pre,post) |
4485 |
o OBC and NonLin_FrSurf. |
o OBC and NonLin_FrSurf. |
4486 |
|
|
4487 |
checkpoint44 |
checkpoint44 (2002/01/18) |
4488 |
o fix bug in mom_vi_del2uv |
o fix bug in mom_vi_del2uv |
4489 |
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
4490 |
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
4492 |
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
4493 |
o added some stuff for AD |
o added some stuff for AD |
4494 |
|
|
4495 |
checkpoint43 |
checkpoint43 (2001/09/28) |
4496 |
o added two new advection tests |
o added two new advection tests |
4497 |
o added global 4x4 degree ocean test |
o added global 4x4 degree ocean test |
4498 |
o added test of H&S94 with free surface on cube |
o added test of H&S94 with free surface on cube |
4499 |
o some final mods for gradient check, adjoint,... |
o some final mods for gradient check, adjoint,... |
4500 |
|
|
4501 |
checkpoint42 |
checkpoint42 (2001/09/27) |
4502 |
Fixed AD-related problems: |
Fixed AD-related problems: |
4503 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
o Store directives up-to-date with re-arranged Adams-Bashforth |
4504 |
(mainly thermodynamics.F) |
(mainly thermodynamics.F) |
4510 |
for the case ALLOW_KPP |
for the case ALLOW_KPP |
4511 |
o Cleaned argument list for timestep_tracer.F |
o Cleaned argument list for timestep_tracer.F |
4512 |
|
|
4513 |
checkpoint41 |
checkpoint41 (2001/09/27) |
4514 |
o re-formatted/added comments in prologues of key subroutines |
o re-formatted/added comments in prologues of key subroutines |
4515 |
to work with protex |
to work with protex |
4516 |
|
|
4517 |
checkpoint40 |
checkpoint40 (2001/09/27) |
4518 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
4519 |
o added FLT (floats) package from Arne along with demo. experiment |
o added FLT (floats) package from Arne along with demo. experiment |
4520 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
4523 |
o modified multi-dim method to work on cube |
o modified multi-dim method to work on cube |
4524 |
o bug fix in KPP (from DM) |
o bug fix in KPP (from DM) |
4525 |
|
|
4526 |
checkpoint40pre9 |
checkpoint40pre9 (2001/09/27) |
4527 |
o added DST advection schemes |
o added DST advection schemes |
4528 |
o fix MPI bug on SGI's |
o fix MPI bug on SGI's |
4529 |
o modifications for non-linear free-surface |
o modifications for non-linear free-surface |
4533 |
o added/updated many matlab scripts |
o added/updated many matlab scripts |
4534 |
o added multi-dimensional advection method for tracers |
o added multi-dimensional advection method for tracers |
4535 |
|
|
4536 |
checkpoint40pre8 |
checkpoint40pre8 (2001/09/05) |
4537 |
o new package rw/ |
o new package rw/ |
4538 |
Added method for dumping intermediate local arrays: |
Added method for dumping intermediate local arrays: |
4539 |
mdsio_writetile - same as mdsio_writefield except works from inside |
mdsio_writetile - same as mdsio_writefield except works from inside |
4552 |
currently nothing implemented to switch this storing off |
currently nothing implemented to switch this storing off |
4553 |
in case fluxform is used since no CPP flag available). |
in case fluxform is used since no CPP flag available). |
4554 |
|
|
4555 |
checkpoint40pre7 |
checkpoint40pre7 (2001/08/14) |
4556 |
o bug fix in dynamics.F |
o bug fix in dynamics.F |
4557 |
calc_viscosity called before k=1,Nr loop. |
calc_viscosity called before k=1,Nr loop. |
4558 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
4559 |
o cleaned initialisations in ctrl_map_ini |
o cleaned initialisations in ctrl_map_ini |
4560 |
related to TAF |
related to TAF |
4561 |
|
|
4562 |
checkpoint40pre6 |
checkpoint40pre6 (2001/08/13) |
4563 |
o split dynamics into thermodynamics & dynamics |
o split dynamics into thermodynamics & dynamics |
4564 |
o corresponding split of calc_diffusivity into |
o corresponding split of calc_diffusivity into |
4565 |
calc_diffusivity, calc_viscosity |
calc_diffusivity, calc_viscosity |
4567 |
o Added diffkr, kapgm to control variables |
o Added diffkr, kapgm to control variables |
4568 |
o bug fix in gmredi_slope_limit for ldd97 |
o bug fix in gmredi_slope_limit for ldd97 |
4569 |
|
|
4570 |
checkpoint40pre5 |
checkpoint40pre5 (2001/07/31) |
4571 |
o proper initialization of Adams-Bashforth time stepping |
o proper initialization of Adams-Bashforth time stepping |
4572 |
+ uses forward step for very first step of model (iter=0) |
+ uses forward step for very first step of model (iter=0) |
4573 |
o re-generated *all* output since almost all output is modified by this |
o re-generated *all* output since almost all output is modified by this |
4581 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
+ this uses an alternative form of ini_curvilinear_grid.F which |
4582 |
is not necessarily any better than the current one... |
is not necessarily any better than the current one... |
4583 |
|
|
4584 |
checkpoint40pre4 |
checkpoint40pre4 (2001/07/30) |
4585 |
o added re-initialisations of utrans,vtrans,rtrans in |
o added re-initialisations of utrans,vtrans,rtrans in |
4586 |
calc_common_factors which are crucial for TAF. |
calc_common_factors which are crucial for TAF. |
4587 |
o extended iMin,jMin range for calc_common_factors, |
o extended iMin,jMin range for calc_common_factors, |
4589 |
o added option ALLOW_PASSIVE_TRACER |
o added option ALLOW_PASSIVE_TRACER |
4590 |
o a few minor updates and fixes |
o a few minor updates and fixes |
4591 |
|
|
4592 |
checkpoint40pre3 |
checkpoint40pre3 (2001/07/13) |
4593 |
o created calc_gtr1.F for gad package |
o created calc_gtr1.F for gad package |
4594 |
o split the_main_loop and re-introduced forward_step |
o split the_main_loop and re-introduced forward_step |
4595 |
o some recomputations of nIter0 for TAMC |
o some recomputations of nIter0 for TAMC |
4596 |
|
|
4597 |
checkpoint40pre2 |
checkpoint40pre2 (2001/07/13) |
4598 |
o Updated to latest branch of AJA, JMC |
o Updated to latest branch of AJA, JMC |
4599 |
o Added gradient check package |
o Added gradient check package |
4600 |
o Added routines for passive tracer handling |
o Added routines for passive tracer handling |
4601 |
o Added carbon sequestration sensitivity experiment |
o Added carbon sequestration sensitivity experiment |
4602 |
|
|
4603 |
checkpoint39 |
checkpoint39 (2001/05/14) |
4604 |
o Modifications and fixes to support TAMC |
o Modifications and fixes to support TAMC |
4605 |
(mainly missing or wrong directives) |
(mainly missing or wrong directives) |
4606 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
4614 |
(NB: this is not the full ECCO environment) |
(NB: this is not the full ECCO environment) |
4615 |
o disabled some packages by default in genmake |
o disabled some packages by default in genmake |
4616 |
|
|
4617 |
checkpoint38 |
checkpoint38 (2001/04/10) |
4618 |
o see notes_c37_adj.txt |
o see notes_c37_adj.txt |
4619 |
o corrected wrong layer index in external_forcing_t |
o corrected wrong layer index in external_forcing_t |
4620 |
o replaced the_main_loop/forward_step by the_main_loop |
o replaced the_main_loop/forward_step by the_main_loop |
4622 |
(replaced criteria for initial/final state) |
(replaced criteria for initial/final state) |
4623 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
4624 |
|
|
4625 |
checkpoint37 |
checkpoint37 (2001/03/13) |
4626 |
o mdsio.F routine split and packaged in pkg/mdsio |
o mdsio.F routine split and packaged in pkg/mdsio |
4627 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
4628 |
used unless genmake -disable=mdsio) |
used unless genmake -disable=mdsio) |
4639 |
o Non-Hydrostatic pickup file Pb fixed. |
o Non-Hydrostatic pickup file Pb fixed. |
4640 |
o bug with Rigid-lid version (since c35) fixed. |
o bug with Rigid-lid version (since c35) fixed. |
4641 |
|
|
4642 |
checkpoint36 |
checkpoint36 (2001/02/20) |
4643 |
o implement Crank-Nickelson barotropic time-stepping |
o implement Crank-Nickelson barotropic time-stepping |
4644 |
o recover Time-Average diagnostics |
o recover Time-Average diagnostics |
4645 |
o fix Pb in checkpoint (PR#19) |
o fix Pb in checkpoint (PR#19) |
4646 |
o AIM become a standard package ; clean unused CPP_kees |
o AIM become a standard package ; clean unused CPP_kees |
4647 |
|
|
4648 |
checkpoint35 |
checkpoint35 (2001/02/08) |
4649 |
o subtantial rewrite of dynamics.f |
o subtantial rewrite of dynamics.f |
4650 |
o allows staggered time-stepping |
o allows staggered time-stepping |
4651 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
4652 |
o added bottom drag (linear + quadratic) |
o added bottom drag (linear + quadratic) |
4653 |
|
|
4654 |
checkpoint34 |
checkpoint34 (2001/01/30) |
4655 |
o Modified exchange routines for correct reverse simulation. |
o Modified exchange routines for correct reverse simulation. |
4656 |
o Added verification output to comply with bug fix in impldiff.F |
o Added verification output to comply with bug fix in impldiff.F |
4657 |
as of c33 (exp2, natl_box). |
as of c33 (exp2, natl_box). |
4662 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
o Added routine GLOBAL_SUM_INT to global_sum.F |
4663 |
o Added mdsio_gl.F for ECCO purposes. |
o Added mdsio_gl.F for ECCO purposes. |
4664 |
|
|
4665 |
checkpoint33 |
checkpoint33 (2000/11/30) |
4666 |
o Fixed bug in lower BC in impldiff.F |
o Fixed bug in lower BC in impldiff.F |
4667 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
4668 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
4680 |
possibly use them. |
possibly use them. |
4681 |
o Corrected genmake to delete a temporary file during configuration |
o Corrected genmake to delete a temporary file during configuration |
4682 |
|
|
4683 |
checkpoint32 |
checkpoint32 (2000/11/13) |
4684 |
o Scaling of forcing fields moved from external_forcing.F to |
o Scaling of forcing fields moved from external_forcing.F to |
4685 |
external_fields_scale.F, called directly after loading fields. |
external_fields_scale.F, called directly after loading fields. |
4686 |
o Surface relaxation terms added to surface tendency fields in |
o Surface relaxation terms added to surface tendency fields in |
4691 |
o Modifications and bug fixes in KPP package. |
o Modifications and bug fixes in KPP package. |
4692 |
o Verification experiment for KPP added (verification/nat_box/) |
o Verification experiment for KPP added (verification/nat_box/) |
4693 |
|
|
4694 |
checkpoint31 |
checkpoint31 (2000/09/11) |
4695 |
o Packages interface brought in line with defined standard |
o Packages interface brought in line with defined standard |
4696 |
-> new routines packages_...F |
-> new routines packages_...F |
4697 |
-> changes in initialise_fixed.F, initialise_varia.F |
-> changes in initialise_fixed.F, initialise_varia.F |
4708 |
- not yet tested for GMRedi. |
- not yet tested for GMRedi. |
4709 |
- not yet tested for KPP. |
- not yet tested for KPP. |
4710 |
|
|
4711 |
checkpoint30 |
checkpoint30 (2000/07/13) |
4712 |
o Updates for OBCs |
o Updates for OBCs |
4713 |
o New experiment for test OBCs (internal_wave) |
o New experiment for test OBCs (internal_wave) |
4714 |
o New output.txt in verification/exp4/results/ |
o New output.txt in verification/exp4/results/ |
4717 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
4718 |
and entry for T90 in genmake |
and entry for T90 in genmake |
4719 |
|
|
4720 |
checkpoint29 |
checkpoint29 (2000/06/21) |
4721 |
o packaged KPP and GM/Redi |
o packaged KPP and GM/Redi |
4722 |
|
|
4723 |
checkpoint28 |
checkpoint28 (2000/06/09) |
4724 |
o Corrected initialization of hFacMin for difference vertical coordinates |
o Corrected initialization of hFacMin for difference vertical coordinates |
4725 |
o Modified calculation of partial cell thickness to more robust algorithm |
o Modified calculation of partial cell thickness to more robust algorithm |
4726 |
o config_summary.F: replaced write_1D_... by write_0D_... |
o config_summary.F: replaced write_1D_... by write_0D_... |
4733 |
included store directives and tape key computations required for TAMC. |
included store directives and tape key computations required for TAMC. |
4734 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
4735 |
|
|
4736 |
checkpoint27 |
checkpoint27 (2000/04/10) |
4737 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
4738 |
formulation works properly with variable resolution. |
formulation works properly with variable resolution. |
4739 |
o restructured the calling tree between the_model_main() and dynamics() |
o restructured the calling tree between the_model_main() and dynamics() |
4741 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
4742 |
in new routine ini_psurf() |
in new routine ini_psurf() |
4743 |
|
|
4744 |
checkpoint26 |
checkpoint26 (2000/04/05) |
4745 |
o moved some #ifdef in optional routines to encompass everything |
o moved some #ifdef in optional routines to encompass everything |
4746 |
except the argument declarations. This was using up some memory. |
except the argument declarations. This was using up some memory. |
4747 |
o fixed macros like _ADT to work with both versions of Linux cpp |
o fixed macros like _ADT to work with both versions of Linux cpp |
4751 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
4752 |
o patch for 2 processor JAM mode |
o patch for 2 processor JAM mode |
4753 |
|
|
4754 |
checkpoint25 |
checkpoint25 (2000/03/15) |
4755 |
o updates for OBCs and NH |
o updates for OBCs and NH |
4756 |
o dramatically reduced memory usage |
o dramatically reduced memory usage |
4757 |
o added "JAM" routines for use on Artic network |
o added "JAM" routines for use on Artic network |
4762 |
an explicit free-surface option) |
an explicit free-surface option) |
4763 |
o initial state input files for U and V |
o initial state input files for U and V |
4764 |
|
|
4765 |
checkpoint24 |
checkpoint24 (1999/08/02) |
4766 |
o Removed some spurious "REAL"s |
o Removed some spurious "REAL"s |
4767 |
o Updated KPP to latest version from JPL |
o Updated KPP to latest version from JPL |
4768 |
o Added a COS(latitude) in horizontal viscosity |
o Added a COS(latitude) in horizontal viscosity |
4769 |
|
|
4770 |
checkpoint23 |
checkpoint23 (1999/05/26) |
4771 |
o Added del^4 diffusion for salt and temperature |
o Added del^4 diffusion for salt and temperature |
4772 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
4773 |
|
|
4774 |
checkpoint22 |
checkpoint22 (1999/05/18) |
4775 |
o Made many small changes: implicit none, format(i5), etc... |
o Made many small changes: implicit none, format(i5), etc... |
4776 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
4777 |
|
|
4778 |
checkpoint21 |
checkpoint21 (1999/05/18) |
4779 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
4780 |
o Split-up mid-level I/O routines |
o Split-up mid-level I/O routines |
4781 |
o Updated input data for experiments 0,1,2,4 and 5 |
o Updated input data for experiments 0,1,2,4 and 5 |
4782 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
4783 |
|
|
4784 |
checkpoint20 |
checkpoint20 (1999/03/22) |
4785 |
o Tidied up open-boundaries some more |
o Tidied up open-boundaries some more |
4786 |
o Added non-hydrostatic code |
o Added non-hydrostatic code |
4787 |
o Fixed some input data |
o Fixed some input data |
4788 |
o Modified MPI start-up to work in "coupled" context. |
o Modified MPI start-up to work in "coupled" context. |
4789 |
|
|
4790 |
checkpoint19 |
checkpoint19 (1998/12/15) |
4791 |
o Tidied up directory structure for verification experiments. |
o Tidied up directory structure for verification experiments. |
4792 |
o Added new code for open boundaries. |
o Added new code for open boundaries. |
4793 |
o Corrected advective terms near boundaries. |
o Corrected advective terms near boundaries. |
4795 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
4796 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
o Split default parameters out of ini_parms.F into set_defaults.F. |
4797 |
|
|
4798 |
checkpoint18 |
checkpoint18 (1998/11/30) |
4799 |
o Further changes for optional code generation with |
o Further changes for optional code generation with |
4800 |
CPP - ugh! |
CPP - ugh! |
4801 |
|
|
4802 |
checkpoint17 |
checkpoint17 (1998/11/03) |
4803 |
o Beginning to incorporating modularity |
o Beginning to incorporating modularity |
4804 |
for supporting atmos. and ocean configs. |
for supporting atmos. and ocean configs. |
4805 |
o Small changes for TAMC complinace |
o Small changes for TAMC complinace |
4806 |
o New ultra simple test case. Barotropic box |
o New ultra simple test case. Barotropic box |
4807 |
configuration "exp0". |
configuration "exp0". |
4808 |
|
|
4809 |
checkpoint16 |
checkpoint16 (1998/10/28) |
4810 |
o Minor changes to exchange routines to support |
o Minor changes to exchange routines to support |
4811 |
accumulation in reverse mode. Adjoint of an |
accumulation in reverse mode. Adjoint of an |
4812 |
assignment is an addition. |
assignment is an addition. |
4814 |
syntax) and by g77 under Linux ( 72 character |
syntax) and by g77 under Linux ( 72 character |
4815 |
limit ). |
limit ). |
4816 |
|
|
4817 |
checkpoint15 |
checkpoint15 (1998/09/29) |
4818 |
Rewrote exchange routines to allow |
Rewrote exchange routines to allow |
4819 |
o General tile <-> tile connectivity. |
o General tile <-> tile connectivity. |
4820 |
o TAMC reverse mode flag ( is this really needed? ) |
o TAMC reverse mode flag ( is this really needed? ) |
4823 |
shmput/shmget, VIA, SYSV shmem and every other cool |
shmput/shmget, VIA, SYSV shmem and every other cool |
4824 |
communication method. |
communication method. |
4825 |
|
|
4826 |
checkpoint14 |
checkpoint14 (1998/09/09) |
4827 |
Consistent isomorphism chages made. These allow dynamical core |
Consistent isomorphism chages made. These allow dynamical core |
4828 |
to support both pressure and meters as a vertical coordinate. |
to support both pressure and meters as a vertical coordinate. |
4829 |
|
|
4830 |
checkpoint13 |
checkpoint13 (1998/07/17) |
4831 |
Release which corrects global_max problem and a couple |
Release which corrects global_max problem and a couple |
4832 |
of KGM time-averaging diagnostic errors. Also contains |
of KGM time-averaging diagnostic errors. Also contains |
4833 |
a double-gyre experiment setup as well as the baseline |
a double-gyre experiment setup as well as the baseline |
4842 |
I don't want to commit the rDot to the main-trunk until |
I don't want to commit the rDot to the main-trunk until |
4843 |
we've actually tested it... |
we've actually tested it... |
4844 |
|
|
4845 |
checkpoint12 |
checkpoint12 (1998/07/08) |
4846 |
Tidy up and added generic genmake script (formerly |
Tidy up and added generic genmake script (formerly |
4847 |
configure script). |
configure script). |
4848 |
Released to testers. |
Released to testers. |
4849 |
|
|
4850 |
checkpoint11 |
checkpoint11 (1998/07/02) |
4851 |
Re-arranged initialise() and introduced ini_vertical_grid() |
Re-arranged initialise() and introduced ini_vertical_grid() |
4852 |
and ini_masks_etc(). |
and ini_masks_etc(). |
4853 |
|
|
4854 |
checkpoint10 |
checkpoint10 (1998/07/01) |
4855 |
Introduced the configure script. |
Introduced the configure script. |
4856 |
Separated out the diags package. |
Separated out the diags package. |
4857 |
Added template for writing time-averages of tile/intermediate quantities. |
Added template for writing time-averages of tile/intermediate quantities. |
4858 |
Updated SIZE.h in exp2 and made the data big-endian. |
Updated SIZE.h in exp2 and made the data big-endian. |
4859 |
|
|
4860 |
checkpoint9 |
checkpoint9 (1998/06/22) |
4861 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
4862 |
General tidy-up. |
General tidy-up. |
4863 |
SST.bin SSS.bin added to verification/exp2 |
SST.bin SSS.bin added to verification/exp2 |
4864 |
|
|
4865 |
checkpoint8 |
checkpoint8 (1998/06/22) |
4866 |
Inludes time-dependant forcing and time-averaging. |
Inludes time-dependant forcing and time-averaging. |
4867 |
Works at 4x4 and 2.8125x2.8125 global |
Works at 4x4 and 2.8125x2.8125 global |
4868 |
|
|
4872 |
model etc.. |
model etc.. |
4873 |
Configured for verification/exp2 - 4 degree global, two process. |
Configured for verification/exp2 - 4 degree global, two process. |
4874 |
|
|
4875 |
checkpoint7 |
checkpoint7 (1998/06/15) |
4876 |
Created by cnh |
Created by cnh |
4877 |
Simple 4 degree global simulation |
Simple 4 degree global simulation |
4878 |
configuration. |
configuration. |
4880 |
hydrography, bathymetry etc |
hydrography, bathymetry etc |
4881 |
Does not include Heat Flux and E-P |
Does not include Heat Flux and E-P |
4882 |
|
|
4883 |
checkpoint6 |
checkpoint6 (1998/06/08) |
4884 |
Created by cnh |
Created by cnh |
4885 |
merged checkpoint5 with CD and |
merged checkpoint5 with CD and |
4886 |
spherical polar code. |
spherical polar code. |
4887 |
Still some problems with GM Redi |
Still some problems with GM Redi |
4888 |
abd full topography. |
abd full topography. |
4889 |
|
|
4890 |
checkpoint5 |
checkpoint5 (1998/06/08) |
4891 |
Created by AJA |
Created by AJA |
4892 |
contains updates to GM Redi |
contains updates to GM Redi |
4893 |
and reordered timestepping loop |
and reordered timestepping loop |
4894 |
for Implicit Diffusion. |
for Implicit Diffusion. |
4895 |
|
|
4896 |
checkpoint4 |
checkpoint4 (1998/05/30) |
4897 |
Created by cnh |
Created by cnh |
4898 |
Contains memory saving macros ( _rdxc etc..) for when |
Contains memory saving macros ( _rdxc etc..) for when |
4899 |
grid variations are limited. |
grid variations are limited. |
4900 |
Contains polynomial coeffs for EOS and knudsen program |
Contains polynomial coeffs for EOS and knudsen program |
4901 |
for generation. |
for generation. |
4902 |
|
|
4903 |
checkpoint3 |
checkpoint3 (1998/05/26) |
4904 |
Created by cnh |
Created by cnh |
4905 |
Added extra flags for runtime options |
Added extra flags for runtime options |
4906 |
Added this file |
Added this file |