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revision 1.1211 by jmc, Mon Dec 28 02:46:20 2009 UTC revision 1.1226 by jmc, Tue Jan 26 16:13:21 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint62b (2010/01/26)
8    o pkg/monitor:
9      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
10        (in case someone forgot to update customized pieces of code)
11    o nonHydrostatic:
12      - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
13      - add a simple 2-D experiment (short_surf_wave) to test it.
14    o pkg/icefront:
15       adding the shell of, and the hooks to, a new package that
16       will model melting and freezing of vertical glacier ice fronts
17    o momentum:
18      add diagnostics of momentum tendency from Hydrostatic pressure gradient
19       (without surf.pressure term: would need a 2nd filling since implicit term).
20    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
21      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
22      cannot deal with the former
23    o cleaning:
24      - remove all (except OpenAD) old TLM output from results_ad dirs.
25      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
26      - comment out maskH definition (replaced by maskInC)
27    o pkg/monitor:
28      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
29        & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
30    
31    checkpoint62a (2010/01/15)
32    o model/src:
33      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
34    o pkg/diagnostics:
35      - add optional level number diagnostics (i.e., level number to be define
36        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
37      - strictly check for valid parser-code(10) ;
38      - check if adding diag to the list from the right place.
39    o pkg/longstep:
40      - change parameters and fix tracer conservation with rstar/nonlinear free surface
41    o diagnostics:
42     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
43       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
44    o pkg/diagnostics:
45     - Add option for writing vertical integral (sum of selected levels) of an output
46        field instead of writing output field levels. Activate this option on a per
47        output-file basis, by setting the 2nd character of fileflag to 'I'.
48     - Add field-specific information relative to level integral in 3rd postion
49        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
50        vertically (x level-thickness x hFac), "r"=same but without hFac.
51    o do_the_model_io:
52      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
53        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
54        writing pickups and stopping.
55    o pkg/diagnostics (for now, only with mdsio):
56      - write time information to meta file (and modify accordingly rdmds.m) :
57        time-averaged diagnostics output: write starting and ending time of the
58        time-averaging interval ; snap-shot diagnostics output remains unchanged;
59    o pkg/timeave:
60      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
61        always Nr), now assumed to be equal to number of levels of averaged field;
62        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
63    o pkg/sbo:
64      - fix ocean bottom pressure global-average & 2-D time-ave output (was
65        neither initialised nor filled).
66      - add starting iteration in suffix of global-average output file
67        (to avoid over-writing the file after a restart)
68      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
69    o time-average:
70      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
71        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
72         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
73        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
74      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
75      - fix missing accumulation for pkg/opps.
76      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
77         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
78      - fix initialisation of time-ave vars and do only full time-step increment
79        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
80  o pkg/layers:  o pkg/layers:
81    - use standard RW pkg S/R to write the output    - use standard RW pkg S/R to write the output
82      and remove local write_fld version (which had a problem).      and remove local write_fld version (which had a problem).
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