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revision 1.1207 by jmc, Mon Dec 21 02:11:36 2009 UTC revision 1.1229 by jmc, Tue Feb 16 23:58:09 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o tools/build_options:
8      - rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile)
9        but keep the former optfile for few weeks for smooth transition
10    o pkg/ecco
11      - allow user defined cost function contributions
12            CPP: ALLOW_USERCOST_CONTRIBUTION
13            USAGE: compute contributions in cost_usercost_all.F
14      - note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was.
15          the two options are complementary.
16    o pkg/smooth
17      - migration from contrib to the main repository
18    
19    checkpoint62b (2010/01/26)
20    o pkg/monitor:
21      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
22        (in case someone forgot to update customized pieces of code)
23    o nonHydrostatic:
24      - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
25      - add a simple 2-D experiment (short_surf_wave) to test it.
26    o pkg/icefront:
27       adding the shell of, and the hooks to, a new package that
28       will model melting and freezing of vertical glacier ice fronts
29    o momentum:
30      add diagnostics of momentum tendency from Hydrostatic pressure gradient
31       (without surf.pressure term: would need a 2nd filling since implicit term).
32    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
33      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
34      cannot deal with the former
35    o cleaning:
36      - remove all (except OpenAD) old TLM output from results_ad dirs.
37      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
38      - comment out maskH definition (replaced by maskInC)
39    o pkg/monitor:
40      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
41        & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
42    
43    checkpoint62a (2010/01/15)
44    o model/src:
45      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
46    o pkg/diagnostics:
47      - add optional level number diagnostics (i.e., level number to be define
48        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
49      - strictly check for valid parser-code(10) ;
50      - check if adding diag to the list from the right place.
51    o pkg/longstep:
52      - change parameters and fix tracer conservation with rstar/nonlinear free surface
53    o diagnostics:
54     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
55       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
56    o pkg/diagnostics:
57     - Add option for writing vertical integral (sum of selected levels) of an output
58        field instead of writing output field levels. Activate this option on a per
59        output-file basis, by setting the 2nd character of fileflag to 'I'.
60     - Add field-specific information relative to level integral in 3rd postion
61        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
62        vertically (x level-thickness x hFac), "r"=same but without hFac.
63    o do_the_model_io:
64      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
65        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
66        writing pickups and stopping.
67    o pkg/diagnostics (for now, only with mdsio):
68      - write time information to meta file (and modify accordingly rdmds.m) :
69        time-averaged diagnostics output: write starting and ending time of the
70        time-averaging interval ; snap-shot diagnostics output remains unchanged;
71    o pkg/timeave:
72      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
73        always Nr), now assumed to be equal to number of levels of averaged field;
74        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
75    o pkg/sbo:
76      - fix ocean bottom pressure global-average & 2-D time-ave output (was
77        neither initialised nor filled).
78      - add starting iteration in suffix of global-average output file
79        (to avoid over-writing the file after a restart)
80      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
81    o time-average:
82      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
83        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
84         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
85        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
86      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
87      - fix missing accumulation for pkg/opps.
88      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
89         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
90      - fix initialisation of time-ave vars and do only full time-step increment
91        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
92    o pkg/layers:
93      - use standard RW pkg S/R to write the output
94        and remove local write_fld version (which had a problem).
95      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
96      - fix LAYERS_CALC argument list.
97    o pkg/timeave:
98      - store cumulative-time in a simple tiled array (drop the level index)
99      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
100    o pkg/ocn,aim_compon_interf
101      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
102    
103    checkpoint62  (2009/12/23)
104    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
105        (was not previously tested in any other exp.)
106  o pkg/monitor:  o pkg/monitor:
107    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
108      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
109      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
110    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
111    - change del2 calculation.    - change del2 calculation.
# Line 14  o pkg/monitor: Line 113  o pkg/monitor:
113    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
114  o mask & obcs:  o mask & obcs:
115    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
116    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
117      (called after packages_init_fixed)      (called after packages_init_fixed)
118  o pkg/obcs:  o pkg/obcs:
119    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
# Line 28  o nonHydrostatic: Line 127  o nonHydrostatic:
127      (in prep. for new NH free surface form).      (in prep. for new NH free surface form).
128  o pkg/obcs:  o pkg/obcs:
129    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
130  o model/src:  o model/src:
131    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
132    
133  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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