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revision 1.1203 by jmc, Wed Dec 2 02:21:09 2009 UTC revision 1.1215 by jmc, Tue Jan 12 21:35:18 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o diagnostics:
8     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
9       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
10    o pkg/diagnostics:
11     - Add option for writing vertical integral (sum of selected levels) of an output
12        field instead of writing output field levels. Activate this option on a per
13        output-file basis, by setting the 2nd character of fileflag to 'I'.
14     - Add field-specific information relative to level integral in 3rd postion
15        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
16        vertically (x level-thickness x hFac), "r"=same but without hFac.
17    o do_the_model_io:
18      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
19        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
20        writing pickups and stopping.
21    o pkg/diagnostics (for now, only with mdsio):
22      - write time information to meta file (and modify accordingly rdmds.m) :
23        time-averaged diagnostics output: write starting and ending time of the
24        time-averaging interval ; snap-shot diagnostics output remains unchanged;
25    o pkg/timeave:
26      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
27        always Nr), now assumed to be equal to number of levels of averaged field;
28        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
29    o pkg/sbo:
30      - fix ocean bottom pressure global-average & 2-D time-ave output (was
31        neither initialised nor filled).
32      - add starting iteration in suffix of global-average output file
33        (to avoid over-writing the file after a restart)
34      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
35    o time-average:
36      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
37        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
38         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
39        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
40      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
41      - fix missing accumulation for pkg/opps.
42      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
43         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
44      - fix initialisation of time-ave vars and do only full time-step increment
45        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
46    o pkg/layers:
47      - use standard RW pkg S/R to write the output
48        and remove local write_fld version (which had a problem).
49      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
50      - fix LAYERS_CALC argument list.
51    o pkg/timeave:
52      - store cumulative-time in a simple tiled array (drop the level index)
53      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
54    o pkg/ocn,aim_compon_interf
55      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
56    
57    checkpoint62  (2009/12/23)
58    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
59        (was not previously tested in any other exp.)
60    o pkg/monitor:
61      - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
62        mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
63        (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
64      - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
65      - change del2 calculation.
66      - use interior masks (instead of maskH, <- to be remove).
67      - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
68    o mask & obcs:
69      - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
70      - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
71        (called after packages_init_fixed)
72    o pkg/obcs:
73      - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
74        Fixes bug in obcs+exf with nSx*nSy.GT.1
75      - fix multi-tile handling in obcs balance code
76    o nonHydrostatic:
77      - Implement AB-3 for non-hydrostatic vertical momentum ;
78        (change ordering of var. stored in pickup file when using NH)
79      - move NH code from solve_for_pressure.F to 2 new S/R: PRE_CG3D & POST_CG3D.
80      - add 2-D field to store Hydrostatic Surface Pressure adjusment from cg3d_x
81        (in prep. for new NH free surface form).
82    o pkg/obcs:
83      add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
84    o model/src:
85      fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
86    
87  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
88  o nonHydrostatic:  o nonHydrostatic:
89    Fix missing vertical flux of vert. momentum near surface (k=1). This fixes    Fix missing vertical flux of vert. momentum near surface (k=1). This fixes
# Line 42  o pkg/cd_code: Line 122  o pkg/cd_code:
122     lab_sea (3 Fwd +3 AD), natl_box (x2), tutorial_global_oce_biogeo (Fwd+AD),     lab_sea (3 Fwd +3 AD), natl_box (x2), tutorial_global_oce_biogeo (Fwd+AD),
123     tutorial_global_oce_latlon, tutorial_global_oce_optim & tutorial_tracer_adjsens.     tutorial_global_oce_latlon, tutorial_global_oce_optim & tutorial_tracer_adjsens.
124    Keep old results by adding CD_CODE_OPTIONS.h in exp: cfc_example, exp2,    Keep old results by adding CD_CODE_OPTIONS.h in exp: cfc_example, exp2,
125         lobal_ocean.90x40x15(+AD), global_ocean_ebm(+AD) and OpenAD.         global_ocean.90x40x15(+AD), global_ocean_ebm(+AD) and OpenAD.
126  o pkg/obcs:  o pkg/obcs:
127   - fix bug in initialisation (broken since Oct 1rst modification)   - fix bug in initialisation (broken since Oct 1rst modification)
128     for useOBCSprescribe without useEXF.     for useOBCSprescribe without useEXF.
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