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revision 1.1034 by mlosch, Sat Oct 25 20:49:22 2008 UTC revision 1.1060 by jmc, Tue Feb 3 23:36:05 2009 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/mdsio & rw:
8     - add argument & option to S/R MDS_WRITEVEC_LOC (avoid Open/Close & write-meta)
9     - add simple interface S/R to MDS_WRITEVEC_LOC in pkg/rw: WRITE_GLVEC_RX.
10    o pkg/flt:
11     - replace FLT_INIT by 3-steps standard initialization S/R: readparms,
12       init_fixed & ini_varia.
13     - clean-up & simplify linear interpolation S/R:
14       move flt_bilinear.F -> flt_interp_linear.F ; add arg. myThid.
15     - fix some indices (mainly vertical index) ; add IMPLICIT NONE.
16     - more efficient I/O, using new options of MDS_WRITEVEC_LOC S/R.
17    o pkg/ggl90: a few modifications:
18     - fix bottom boundary condition, and interpolation of KappaE
19       near top and bottom
20     - use same set of viscosity/diffusivity for TKE/momnetum/tracer
21     - add smoothing option as in Blanke and Delecluse (1993) (--> ALLOW_GGL90_SMOOTH)
22     - add a few options for mixing-length upper limit (--> mxlMaxFlag)  
23    o rename thetaMin,phiMin -> xgOrigin,ygOrigin
24      (maintain temporary backward compatibility, until next checkpoint)
25    
26    checkpoint61h
27    o pkg/diagnostics with "periodic averaging diagnostics":
28      fix S/R DIAGNOSTICS_COUNT ; hack diagnostics_out.F to get NetCDF output.
29    o pkg/my82: add missing "_d 0" ; update output of exp. vermix.my82
30    o pkg/obcs: fix loop ranges for balancing code
31    o pkg/flt:
32     - improve criteria for finding which tile owns a float.
33     - fix FLT_EXCH for case without MPI ; apply cyclic BC + fix also the MPI case.
34    o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg
35      aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling
36      with ocean biogeo)
37    o pkg/flt:
38     - do some cleaning and fix the restart ;
39     - add output.txt in flt_example/results to get this pkg tested.
40    o genmake2: add an EXTENDED_SRC option and flag.
41       for now, cannot be turned on on command line (only through genmake_local)
42    o pkg/mdsio: read/write vector:
43     - singleCpuIO: fix RL/RS in MDSWRITEVECTOR by calling new S/R MDS_BUFFERtoRL/RS
44     - singleCpuIO=F: fix arrType & filePrec & _BYTESWAPIO in both MDSREADVECTOR
45       & MDSWRITEVECTOR by calling new S/R MDS_RD/WR_VEC_RL/RS.
46     - affects gradient of test-exp "bottom_ctrl_5x5" (not due to _BYTESWAPIO)
47      (drop to 4 digits matching for grad). But this test does not look very
48      reliable (was already failling on eddy, fc5, at 6.digits). Update output.
49    
50    checkpoint61g
51    o pkg/flt:
52      - move FLT_CPPOPTIONS.h to FLT_OPTIONS.h (standard name)
53       + make OPTIONS file more standard.
54      - rename S/R MDSREADVECTOR_FLT to FLT_MDSREADVECTOR (to mach src file name)
55      - fix _BYTESWAPIO CPP-Flag
56      - standard reading of file-parameter "data.flt"
57      - fix argument list of S/R FLT_RESTART
58      still need to fix _BYTESWAPIO in pkg/mdsio/mdsio_writevector.F
59    o pkg/obcs: fix a CPP-flag, bug reported by Jeff Blundell
60    o gather_2d.F/scatter_2d.F: suppress vectorisation on NEC SX in respond to
61      a still unfixed compiler/optimization bug
62    
63    checkpoint61f
64    o pkg/seaice, LSR solver: fix bug in GLOBAL_MAX calls ;
65      update results of global_ocean.cs32x15.icedyn test.
66    o move getcon.F from model/src to pkg/fizhi.
67    o pkg/exf: add parameter for extrapolation of temp up to the surface
68       and option to prevent negative evap (in bulk_largeyeager04 only).
69    o Prather Advection scheme: fix tracer conservation for divergent flow
70      (e.g., when using NonLin Free-Surface).
71    o kpp: retire KPPmld diagnostics --> use MXLDEPTH instead
72    o gmredi (Visbeck-variable-K):
73     - add more parameters to Visbeck-variable-K.
74     - use a 5 points average for dSigmaR in Visbeck-K calculation
75       (more "homogenous": same stencil and same weights as in dSigmaH)
76     - update output of ideal_2D_oce experiment.
77  o fix CPP-flag REAL4_IS_SLOW, when _RS expands into real*4  o fix CPP-flag REAL4_IS_SLOW, when _RS expands into real*4
78    (#undef REAL4_IS_SLOW)    (#undef REAL4_IS_SLOW)
79   - pkg/mnc/mnc_cw_cvars.F: write _RS-grid variable as netcdf-real*4   - pkg/mnc/mnc_cw_cvars.F: write _RS-grid variable as netcdf-real*4
# Line 14  o fix CPP-flag REAL4_IS_SLOW, when _RS e Line 84  o fix CPP-flag REAL4_IS_SLOW, when _RS e
84   - model/src/diags_oceanic_surf_flux.F: fix a few diagnostics, but   - model/src/diags_oceanic_surf_flux.F: fix a few diagnostics, but
85     probably not all: copy _RS surface flux fields to RL field before     probably not all: copy _RS surface flux fields to RL field before
86     calling DIAGNOSTICS_FILL     calling DIAGNOSTICS_FILL
87     - model/inc/CPP_EEMACROS.h: make the _EXCH_*_RS macros expand into
88       real*4 (CALL EXCH_*_RS) versions.
89     - tested in 2 experiments: inverted_barometer & solid-body.cs-32x32x1
90       (generate new output).
91    
92  checkpoint61e  checkpoint61e
93  o gmredi (Visbeck-variable-K):  o gmredi (Visbeck-variable-K):
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