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revision 1.1204 by jmc, Tue Dec 8 00:35:38 2009 UTC revision 1.1221 by mlosch, Tue Jan 19 14:25:53 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
8      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
9      cannot deal with the former
10    o cleaning:
11      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
12      - comment out maskH definition (replaced by maskInC)
13    o pkg/monitor:
14      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
15        & mon_calc_stats_rl) to be the RL pendant to mon_printstats_rs & mon_stats_rs.
16    
17    checkpoint62a (2010/01/15)
18    o model/src:
19      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
20    o pkg/diagnostics:
21      - add optional level number diagnostics (i.e., level number to be define
22        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
23      - strictly check for valid parser-code(10) ;
24      - check if adding diag to the list from the right place.
25    o pkg/longstep:
26      - change parameters and fix tracer conservation with rstar/nonlinear free surface
27    o diagnostics:
28     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
29       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
30    o pkg/diagnostics:
31     - Add option for writing vertical integral (sum of selected levels) of an output
32        field instead of writing output field levels. Activate this option on a per
33        output-file basis, by setting the 2nd character of fileflag to 'I'.
34     - Add field-specific information relative to level integral in 3rd postion
35        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
36        vertically (x level-thickness x hFac), "r"=same but without hFac.
37    o do_the_model_io:
38      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
39        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
40        writing pickups and stopping.
41    o pkg/diagnostics (for now, only with mdsio):
42      - write time information to meta file (and modify accordingly rdmds.m) :
43        time-averaged diagnostics output: write starting and ending time of the
44        time-averaging interval ; snap-shot diagnostics output remains unchanged;
45    o pkg/timeave:
46      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
47        always Nr), now assumed to be equal to number of levels of averaged field;
48        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
49    o pkg/sbo:
50      - fix ocean bottom pressure global-average & 2-D time-ave output (was
51        neither initialised nor filled).
52      - add starting iteration in suffix of global-average output file
53        (to avoid over-writing the file after a restart)
54      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
55    o time-average:
56      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
57        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
58         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
59        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
60      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
61      - fix missing accumulation for pkg/opps.
62      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
63         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
64      - fix initialisation of time-ave vars and do only full time-step increment
65        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
66    o pkg/layers:
67      - use standard RW pkg S/R to write the output
68        and remove local write_fld version (which had a problem).
69      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
70      - fix LAYERS_CALC argument list.
71    o pkg/timeave:
72      - store cumulative-time in a simple tiled array (drop the level index)
73      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
74    o pkg/ocn,aim_compon_interf
75      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
76    
77    checkpoint62  (2009/12/23)
78    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
79        (was not previously tested in any other exp.)
80    o pkg/monitor:
81      - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
82        mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
83        (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
84      - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
85      - change del2 calculation.
86      - use interior masks (instead of maskH, <- to be remove).
87      - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
88    o mask & obcs:
89      - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
90      - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
91        (called after packages_init_fixed)
92    o pkg/obcs:
93      - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
94        Fixes bug in obcs+exf with nSx*nSy.GT.1
95      - fix multi-tile handling in obcs balance code
96    o nonHydrostatic:
97      - Implement AB-3 for non-hydrostatic vertical momentum ;
98        (change ordering of var. stored in pickup file when using NH)
99      - move NH code from solve_for_pressure.F to 2 new S/R: PRE_CG3D & POST_CG3D.
100      - add 2-D field to store Hydrostatic Surface Pressure adjusment from cg3d_x
101        (in prep. for new NH free surface form).
102  o pkg/obcs:  o pkg/obcs:
103    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
104  o model/src:  o model/src:
105    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
106    
107  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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