4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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|
7 |
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o pkg/seaice: |
8 |
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- remove unused variables in seaice_evp |
9 |
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- reduce number of SQRT in seaice_evp and seaice_calc_viscosities |
10 |
|
- move if-statement out of loop for better vectorization |
11 |
|
o eeset_parms.F, open_copy_data_file.F & ini_parms.F: |
12 |
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named file replacing SCRATCH files (for TARGET_BGL & TARGET_CRAYXT): |
13 |
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each processor open a different file (a fix from Matt). |
14 |
|
o cg2d: |
15 |
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use simple EXCH (overlap size = 1 and ignore corners), like in cg3d.F : |
16 |
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this reduces number of EXCH calls by 2 when using exch2. |
17 |
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For now, keep previous size array for gc2d_nsa.F to avoid Pb with store |
18 |
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directives and missing simple EXCH (exch_s3d_rx) adjoint code. |
19 |
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o pkg/thsice: |
20 |
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add code for Near Infra-Red albedo (from Jeff) |
21 |
|
(turned on with run-time flag: thSIce_calc_albNIR, in data.ice). |
22 |
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o ini_model_io: |
23 |
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move (from packages_readparms.F & initialise_fixed.F) to ini_model_io.F |
24 |
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MNC & MONITOR initialisation calls; move MNC calls from {pkg}_readparms.F |
25 |
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to {pkg}_init_fixed.F for {pkg}= kpp, seaice & shelfice. |
26 |
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|
27 |
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checkpoint61s |
28 |
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o pkg/exch2 (exch2_rxN_cube*): |
29 |
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remove last BARRIER (no need to synchronise after getting data from shared |
30 |
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buffer (get) as long as any change to buffer (put,recv) is between BARRIER) |
31 |
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o change tiling of natl_box (from 2 to 4 tiles) to get it tested with MPI+MTH |
32 |
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and generate new output (for the 2 tests) using default rotationPeriod. |
33 |
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o pkg/exch2: |
34 |
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- always call exch2_*_cube, not exch-1 anymore, if useCubedSphereExchange=F |
35 |
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(was already the case with AUTODIFF_EXCH2 defined) |
36 |
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- add bj in exch2 arrays and S/R. |
37 |
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- can now use pkg/exch2 for regular (non CS) set-up; switch test experiment |
38 |
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MLAdjust to exch2 (identical results except with MPI -> truncation diff); |
39 |
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o add pkg/longstep for ptracer timestep a multiple of U/V/T/S timestep |
40 |
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- adds deltaT argument to the subroutines TIMESTEP_TRACER DWNSLP_APPLY |
41 |
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GAD_ADVECTION GAD_CALC_RHS GAD_IMPLICIT_R GAD_SOM_ADVECT |
42 |
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- verification experiment natl_box.longstep |
43 |
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o build_options: ifort+mpi_aces optfile (following Constantinos advise): |
44 |
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allow different versions of ifort (8 or 9) and different versions |
45 |
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of mpi (mpich or mpich2) to be used with the same optfile. |
46 |
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requires to load a netcdf module and set MPI_INC_DIR (see comments inside |
47 |
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optfile). Change testing scripts (example_scripts/ACESgrid) accordingly. |
48 |
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o pkg/seaice: |
49 |
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fix previous modif (3-level field removed) for old-pickup reading |
50 |
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|
51 |
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checkpoint61r |
52 |
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o pkg/seaice: |
53 |
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- clean up the 3-time levels of UICE,VICE,HEFF,AREA in three steps: |
54 |
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1. introduce fields for time step (N-1) |
55 |
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2. do not use levels 2 and 3 anymore (but keep them) |
56 |
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3. replace 3D versions of UICE,VICE,HEFF,AREA by 2D versions. This |
57 |
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includes changes to pkg/thsice/thsice_get_velocity.F, |
58 |
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model/src/external_forcing_surf.F, pkg/obcs/obcs_apply_seaice.F, and |
59 |
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pkg/obcs/obcs_apply_uvice.F. |
60 |
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- completely remove code for leap-frog time stepping for second order |
61 |
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advection |
62 |
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- adjusted adjoint accordingly; |
63 |
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gradient checks have improved by an order of magnitude! |
64 |
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|
65 |
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checkpoint61q |
66 |
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o pkg/seaice: fix bug in free slip boundary conditons for LSOR solver |
67 |
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- the boundary conditions along open boundaries are unclear, because the |
68 |
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associated masks are set to zero and are thus treated as closed when |
69 |
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applying the slip-boundary conditions. |
70 |
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- move initialisation of grid variables from seaice_init_varia to _fixed |
71 |
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o adding doc/diags_changes.txt |
72 |
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o model/src: |
73 |
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do_the_model_io: rename few pkg S/R which are called from do_the_model_io, |
74 |
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to avoid "_diags" naming if no relation to pkg/diagnostics. |
75 |
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ini_theta,ini_salt: fix (at least compile the code) reading from NetCDF |
76 |
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file and only call PLOT_FIELD_XYZ if debugMode=T. |
77 |
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remove few PLOT_FIELD_XY calls outside initialisation. |
78 |
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remove few unnecessary BARRIER. |
79 |
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o pkg/salt_plume: add SaltPlumeSouthernOcean to allow disabling |
80 |
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of salt_plume package in Southern Ocean |
81 |
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o pkg/thsice: |
82 |
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- fix hOceMxL in overlap (needed for sea-ice advection); |
83 |
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update output of experiment global_ocean.cs32x15.icedyn. |
84 |
|
o pkg/seaice: |
85 |
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- make the (placeholder-)tracer IceAge a little more meaningful |
86 |
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by avoiding ridging of age due to convergent ice flow |
87 |
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- add diagnostics for surface temperature, atmospheric and oceanic |
88 |
|
heat flux, and atmospheric and oceanic ice growth |
89 |
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|
90 |
|
checkpoint61p |
91 |
|
o eesupp (global_max & global_sum): |
92 |
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- add one more element to buffer (start at index 0) for GL_MAX/SUM output; |
93 |
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- remove starting & endding barrier (no longer needed) |
94 |
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o pkg/mdsio, writelocal: |
95 |
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works also in multi-threaded when LOCBIN_IO_THREAD_SAFE is undefined |
96 |
|
(remove the STOP): uses shared buffer IO to store data from all threads |
97 |
|
and then let master-thread write nThreads tiles. |
98 |
|
o pkg/mdsio (read/write field): |
99 |
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- tiled IO done in 1 piece (all levels at a time); |
100 |
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- new header file "MDSIO_BUFF_3D.h" with 3-D buffers. |
101 |
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- multi-threaded: allow to read/write local (non-shared) array |
102 |
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(was already working with singleCpuIO ; now works also without); |
103 |
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=> no longer needs barrier call after reading a file (added inside |
104 |
|
mds_read/write field). |
105 |
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- move barrier calls outside gather/scatter_2d to mds_read/write_field |
106 |
|
o pkg/obcs/exf |
107 |
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- exf_getffieldrec.F: add a few ". _d 0" and |
108 |
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add code to catch the case fldperiod = 0. |
109 |
|
- obcs_precribe_read.F: change if statements so that they match |
110 |
|
the variable type (_RL) |
111 |
|
- add a separate exf_iprec_obcs to exf_set_obcs (by default equal to |
112 |
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exf_iprec) as part of namelist EXF_NML_01 |
113 |
|
o pkg/mdsio: |
114 |
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- read/write tiled (local) files: read/write 1-level tile chunk at a time |
115 |
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(instead of segment of length sNx); expected to speed up tiled IO. |
116 |
|
o pkg/exch2: |
117 |
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- take buffer copy from/to array out of S/R exch2_send/recv into new |
118 |
|
S/R exch2_put/get ; Exch of local variable now works with MPI+MTH |
119 |
|
(tested by removing commom block statement in SOLVE_FOR_PRESSURE.h). |
120 |
|
- ad version of send/recv no longer needed (but needs exch2_ad_put/ad_get) |
121 |
|
- simplify argument list of S/R exch2_get_uv_bounds and exch2_get_scal_bounds |
122 |
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(which replaces exch2_get_recv_bounds & exch2_get_send_bounds) by |
123 |
|
including Topology header file (and common blocks). |
124 |
|
- implement EXCH_IGNORE_CORNERS in scalar exchange (rx1); |
125 |
|
remove 2nd exch call in exch2_s3d_rx (no longer needed). |
126 |
|
- document S/R arg. list (+ update some comments) |
127 |
|
o pkg/seaice: |
128 |
|
- added SEAICE_CLIM_AIR code, which permits modulation of surface air |
129 |
|
temperature and humidity over sea ice based on climatological values. |
130 |
|
- clean up computation of Hibler+Bryan (1987) stress coupling for the case |
131 |
|
of LSR (this change is expected to change the results slightly because now |
132 |
|
it uses slightly difference moduli from the second last LSR solution, but |
133 |
|
that is more consistent with the stress computations; this part of the code |
134 |
|
is not tested in the verification experiments) |
135 |
|
- fix diagnostics for flux of ice in case of B-grid |
136 |
|
- turn strain rates eij and press into global fields within global |
137 |
|
common block in SEAICE.h for more straighforward diagnostics |
138 |
|
- fix diagnostics for principal stress components, press, zeta, eta |
139 |
|
to give something meaning full |
140 |
|
o change tiling of global_ocean.cs32x15 (12 tiles, 32x16) and generate |
141 |
|
new output (all 4 tests) using default rotationPeriod. |
142 |
|
o pkg KPP: |
143 |
|
- add flag (LimitHblStable) to avoid limiting BL depth under stable conditions |
144 |
|
- fix vertical indices in RI_IWMIX (match between KPP grid from 0 to Nr+1 |
145 |
|
and normal grid from 1 to Nr) |
146 |
|
o Fix computations of L4rdt in mom_calc_visc.F |
147 |
|
o eesupp: |
148 |
|
new S/R ALL_PROC_DIE (like EEDIE, without irrelevant threads err msg): |
149 |
|
should be called before a "stop" if we know that all process are going |
150 |
|
to stop; if one Proc does call this S/R, will hang in MPI_FINALISE. |
151 |
|
|
152 |
|
checkpoint61o |
153 |
|
o pkg/exch2: change check_depths to issue just a warning (instead of error+stop) |
154 |
|
o model/src/ini_curvilinear_grid.F: |
155 |
|
compute angleSin/CosC when they are not read from a file |
156 |
|
o pkg/seaice: |
157 |
|
add pseudo time stepping for LSOR |
158 |
|
o pkg/exch2: |
159 |
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temporary fix for exch2_s3d_rx; update results of exp. hs94.cs-32x32x5.impIGW |
160 |
|
o pkg/seaice: |
161 |
|
Adding separate sea ice albedo, drag coefficients, and HO in Southern |
162 |
|
Ocean from those in Arctic Ocean. See *_south in SEAICE_PARAMS.h |
163 |
|
o SingleCpuIO: |
164 |
|
fix bug put before chkp61n (May 11), when more than 2 MPI cpu are used. |
165 |
|
o pkg/seaice: |
166 |
|
put exchanged variable in (local) common block for MPI+Multi-Threads |
167 |
|
to work (necessary with exch1, and for now with exch2 too). |
168 |
|
o verification: to get more experiments tested with mpi, mth and mpi+mth, |
169 |
|
change tiling of: |
170 |
|
aim.5l_Equatorial_Channel, aim.5l_LatLon, dome, exp4, global_ocean.90x40x15, |
171 |
|
hs94.cs-32x32x5, MLAdjust, offline_exf_seaice & tutorial_plume_on_slope |
172 |
|
update output of exp: |
173 |
|
exp4, global_ocean.90x40x15(+.dwslp), MLAdjust(all 5), |
174 |
|
tutorial_plume_on_slope and hs94.cs-32x32x5 (use default rotationPeriod) |
175 |
|
+ ideal_2D_ocean: use default rotation period + test Global_Sum_SINGLECPU |
176 |
|
(note: output.txt generated on faulks using only 1 tile) |
177 |
|
o eesupp & mdsio (SingleCpuIO): |
178 |
|
- remove MISSING_TILE_IO (from MDSIO_OPTIONS.h), replaced by run-time |
179 |
|
parameter "W2_useE2ioLayOut" (read from file "data.exch2"). |
180 |
|
Note: was not effective for globalFile & useSingleCpuIO=F; now fixed. |
181 |
|
- move MDSIO_SCPU.h (pkg/mdsio) to EEBUFF_SCPU.h (eesupp/inc). |
182 |
|
- fix GLOBAL_SUM_SINGLECPU when using Exch2; re-use same buffers and same |
183 |
|
gather/scatter S/R as with SingleCpuIO (=> 1 less 2D global RL array). |
184 |
|
o pkg/exch2: |
185 |
|
- new code to set-up W2-Exch2 topology (replace matlab-topology-generator): |
186 |
|
read parameter file "data.exch2" if it exists; otherwise try default regular |
187 |
|
cube without blank-tile; new header file "W2_EXCH2_SIZE.h"; |
188 |
|
- update matlab-topology-generator (exch2_setup_cs6_print.m) to be compatible |
189 |
|
with new code (not to be used, just as a backup solution). |
190 |
|
- add examples (e.g., for lat-lon-cap_120) of parameter file "data.exch2" |
191 |
|
in utils/exch2/input. |
192 |
|
|
193 |
|
checkpoint61n |
194 |
|
o eesupp & mdsio (SingleCpuIO): |
195 |
|
- move mapping to global io-buffer inside gather_2d/scater_2d: this save |
196 |
|
memory (1 less 2D global RL array); skip 1 buffer copy; and only send/ |
197 |
|
receive real*4 array (instead of real*8) to read/write 32.bit files. |
198 |
|
(new template for gather_2d/scater_2d, new set of S/R MDS_PASS_R4,8toRL,S |
199 |
|
and remove new mapping S/R) |
200 |
|
o pkg/mdsio: in preparation for topology-generator within pkg/exch2: |
201 |
|
- Change declaration of SingleCpuIO buffer, reduced to only 1 dim.: |
202 |
|
xyBuffer_size, which is set to W2_ioBufferSize from W2_EXCH2_PARAMS.h |
203 |
|
when using exch2. Add S/R to map global io-buffer to global model array. |
204 |
|
- uses exch2_global_Nx,y instead of exch2_domain_nxt,nyt. |
205 |
|
|
206 |
|
checkpoint61m |
207 |
|
o write_utils : change WRITE_1D_R8 to WRITE_1D_RL |
208 |
|
and add 3 other S/R for other types (R4,R8,RS). |
209 |
|
Change calls to WRITE_0D/1D_R[4,8,S,L] to match the type of argument. |
210 |
|
o eesupp/inc/CPP_EEMACROS.h (EXCH & GLOBAL_SUM/MAX macros): |
211 |
|
- ensure suffix (_R4,_R8,_RS,_RL) correspondance between macro and S/R ; |
212 |
|
- reduce number of macro definitions (keep only those which are used); |
213 |
|
can always call directly the corrresponding S/R if needed. |
214 |
|
- everywhere in the code: change macros (EXCH & GLOBAL_SUM/MAX) suffix |
215 |
|
_R4/_R8 to _RS/_RL when applied to _RS/_RL variable. |
216 |
|
Fixed wrong type of arg in: |
217 |
|
atm2d/put_ocnvars.F cheapaml/cheapaml.F ocn_compon_interf/ocn_apply_import.F |
218 |
|
ctrl/ctrl_map_ini_ecco.F seaice/seaice_do_diags.F seaice/seaice_model.F |
219 |
|
To fix: global_sum of var in common block is wrong (multi-threaded) in: |
220 |
|
dic/dic_atmos.F ebm/ebm_area_t.F ebm/ebm_zonalmean.F sbo/sbo_calc.F |
221 |
|
To fix: aim_v23/aim_do_co2.F (BARRIER & GLOBAL_SUM within bi,bj loops) |
222 |
|
o adjustment.cs-32x32x1: test "blank tiles" when compiling with mpi; 2nd |
223 |
|
"nlfs" mpi test is going to stop when checking for unconnected tile egdes. |
224 |
|
o eesupp/src: new S/R to stop everyone when 1 (or more) Proc. find an error |
225 |
|
o pkg/exch2: new S/R EXCH2_CHECK_DEPTHS to check that unconnected tile |
226 |
|
edges are closed (zero depth); might happen with "blank tiles"; |
227 |
|
for now, disabled if using OBCS. |
228 |
|
o tools/gemake2: delete modifs from March 27-29 2009 (with option "-mpi": |
229 |
|
link *_mpi files from "MODS" dir) to return to a strait-forward behavior. |
230 |
|
o move read_write.F to write_utils.F ; new parameter (maxLengthPrt1D) |
231 |
|
to reduce length of 1.D array print in STDOUT. |
232 |
|
o adjustment.cs-32x32x1: changed to oceanic test with 1 continent |
233 |
|
+ use 48 tiles (16x8): this will allow to test "blank tiles". |
234 |
|
o start to test MPI + multi-threaded (change testreport to skip tests |
235 |
|
where number of tiles do not match). |
236 |
|
o genmake2: add option "-omp" to turn on Open-MP ; |
237 |
|
passed to testreport (if using -mth) ; merge few (*+mth) optfiles. |
238 |
|
o pkg/exch2 (+ utils/exch2): ignore blank tiles (instead of removing them) |
239 |
|
and keep the original tile numbering. Note: compatible with old |
240 |
|
W2_EXCH2_TOPOLOGY.h & w2_e2setup.F topology files. |
241 |
|
|
242 |
|
checkpoint61l |
243 |
|
o Overlaps had been forgotten in calculating ijk keys : fixed |
244 |
|
o fix cyrus makedepend for gcc 4.4 |
245 |
|
o experiment fizhi-cs-aqualev20: |
246 |
|
switching to new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE) |
247 |
|
and generate new output. Note: new output is much closer to the old |
248 |
|
one (v1.8) generated with pgf77 -O2 on Mar 14 2007 than it is from |
249 |
|
the previous one (v1.9) generated with pgf77 -O0 on Jun 13 2007. |
250 |
|
o pkg/fizhi: |
251 |
|
- change to avoid indices going deliberately over array-bounds |
252 |
|
- remove unnecessary MPI stuff |
253 |
|
- perpetual spring equinox with "#define FIZHI_USE_FIXED_DAY" |
254 |
|
- new version of S/R GETPWHERE available with #define TRY_NEW_GETPWHERE: |
255 |
|
does not go over array-bounds and therefore returns reliable output. |
256 |
|
- in fizhi_driver.F & fizhi_turb.F, fix "get_alarm" calls: |
257 |
|
this S/R has 4 output arguments, which are used inside "get_alarm"; |
258 |
|
when it is called with the same variable "ndum" in place of several |
259 |
|
output arguments, this produces weird side effect inside "get_alarm" |
260 |
|
(e.g., datein=dates(n) is overwritten by timein=times(n) since both |
261 |
|
datein & timein, resp. 2nd and 3rd arg., are pointed to the same "ndum" |
262 |
|
address) and produces error. |
263 |
|
o tools/gemake2: (March 27-29 2009) |
264 |
|
with option "-mpi": link *_mpi files from "MODS" dir (this is what |
265 |
|
testreport does). |
266 |
|
o lab_sea experiment: change from 2x1 tiles to 2x2 tiles and regenerate output |
267 |
|
o pkg/seaice: fix bug in new version of S/R SEAICE_LSR.F: |
268 |
|
update lab_sea.lsr & lab_sea.salt_plume results |
269 |
|
o pkg/seaice: |
270 |
|
Major overhaul of the LSOR solver: change discretization from original |
271 |
|
finite differences to finite volume. The old routine is still in the |
272 |
|
file seaice_lsr.F and can be turned on with the CPP-flag |
273 |
|
SEAICE_OLD_AND_BAD_DISCRETIZATION |
274 |
|
Along with this change, the discretization of the strain rates is changed. |
275 |
|
The same flag turns on the old discretization in seaice_calc_strainrates.F |
276 |
|
All verification experiments with seaice are affected (except for |
277 |
|
seaice_exf_offline); global_ocean.cs32x15/input.icedyn recovers the old |
278 |
|
results by setting the above flag. |
279 |
|
Further changes involve changes in defaults: |
280 |
|
- ALLOW_FLOODING is defined and turned on by default |
281 |
|
- SEAICEadvSnow = .true. is now the default |
282 |
|
- SEAICEadvSalt = .true. is now the default |
283 |
|
- SEAICEadvAge = .true. is now the default |
284 |
|
- SEAICE_clipVelocities = .false. is now the default |
285 |
|
(as per J. Zhang's recommendation) |
286 |
|
- B-grid, and thus not tested: SEAICE_TEST_ICE_STRESS_1/EXPLICIT_SSH_SLOPE |
287 |
|
is defined, SEAICE_TEST_ICE_STRESS_1 is renamed into SEAICE_BICE_STRESS |
288 |
|
- seaice_growth: replace computation of UG by a simple copy from wspeed |
289 |
|
|
290 |
|
checkpoint61k |
291 |
|
o pkg/seaice: a few bug fixes mostly concerning the metric terms: |
292 |
|
seaice_lsr: fixed a few metric terms, |
293 |
|
affects lab_sea.lsr, lab_sea.salt_plume, seaice_obcs |
294 |
|
add more debugging diagnostics |
295 |
|
seaice_evp: removed superfluous many metric terms of FV discretization |
296 |
|
of stress divergence |
297 |
|
affects lab_sea, lab_sea.hb87 |
298 |
|
seaice_ocean_stress: removed superfluous many metric terms of FV discretization |
299 |
|
of stress divergence for non-evp solver |
300 |
|
(this part is not tested anywhere) |
301 |
|
seaice_calc_strainrates: fixed a bug in no-slip boundary conditions, |
302 |
|
they were effectively only half slip |
303 |
|
affects lab_sea.hb87 |
304 |
|
updated all relevant verification experiments (except lab_sea//output_adm.txt |
305 |
|
which was left over, but fails at level 7 & 6) |
306 |
|
|
307 |
|
checkpoint61j |
308 |
|
o pkg/seaice: turn a few hard wired parameters into run time parameters |
309 |
|
o pkg/seaice/exf/monitor: turn netcdf coordinate variable T into model |
310 |
|
time in seconds as promised by the usints in seaice_monitor and exf_monitor |
311 |
|
o pkg/mnc: fix the coordinate variables for multi-tile curvi-linear grids |
312 |
|
that are not cubed-sphere grids |
313 |
|
o pkg/seaice: fix a bug for the rare case of SEAICE_VECTORIZE_LSR |
314 |
|
o pkg/ctrl: |
315 |
|
fix bug in ctrl_depth_ini.F (EXCH_XYZ was applied to 2-D field xx_r_low) |
316 |
|
o non-hydrostatic (calc_gw.F): |
317 |
|
fix viscA4 on CS-grid + fix diagnostics: Wm_Diss & Wm_Advec |
318 |
|
update output of exp. global_ocean.cs32x15.viscA4 |
319 |
|
o remove backward compatibility for thetaMin,phiMin |
320 |
|
(replaced by xgOrigin,ygOrigin on Jan 27, 2009) |
321 |
|
o pkg/exf: fix a serious bug in exf_set_uv.F: do a rotation of the |
322 |
|
interpolated wind field not only for curvilineargrid=.true., but also |
323 |
|
for a rotated grid (rotateGrid=.true.) |
324 |
|
o pkg/exf: add capability to bypass interpolation for runoff |
325 |
|
by setting yet another CPP-flag |
326 |
|
o eesupp/src, B-grid exchange: |
327 |
|
add simple (6 tiles, non MPI) CS exch + standard interface S/R. |
328 |
|
o autodiff |
329 |
|
new CPP option ALLOW_TAMC_SINGLEPREC_COMLEV |
330 |
|
allows to switch to single-prec common blocks; |
331 |
|
corresponding switch occurs in tamc.h, integer isbyte |
332 |
|
TAF store directivs "byte" and "kind" seem equivalent; |
333 |
|
Most tamc.h have been updated correspondingly. |
334 |
|
|
335 |
|
checkpoint61i |
336 |
|
o autodiff: |
337 |
|
fix autodiff_sore/_restore indices for obcs |
338 |
|
(spotted by I. Hoteit, M. Mazloff) |
339 |
|
o pkg/autodiff, pkg/ctrl: |
340 |
|
Add flag to reduce all tapelev I/O to single-prec. |
341 |
|
In data.ctrl set |
342 |
|
doSinglePrecTapelev = .TRUE. |
343 |
|
o model/src/ini_curvilinear_grid.F, new grid-file format without EXCH2: |
344 |
|
check in hack for SX8 compiler (for dxV, dyU); remove it afterwards. |
345 |
|
o pkg/shelfice: fix bug with SHELFICEconserve flag, prepare for |
346 |
|
real fresh water flux (not yet) |
347 |
|
o pkg/mdsio & rw: |
348 |
|
- add argument & option to S/R MDS_WRITEVEC_LOC (avoid Open/Close & write-meta) |
349 |
|
- add simple interface S/R to MDS_WRITEVEC_LOC in pkg/rw: WRITE_GLVEC_RX. |
350 |
|
o pkg/flt: |
351 |
|
- replace FLT_INIT by 3-steps standard initialization S/R: readparms, |
352 |
|
init_fixed & ini_varia. |
353 |
|
- clean-up & simplify linear interpolation S/R: |
354 |
|
move flt_bilinear.F -> flt_interp_linear.F ; add arg. myThid. |
355 |
|
- fix some indices (mainly vertical index) ; add IMPLICIT NONE. |
356 |
|
- more efficient I/O, using new options of MDS_WRITEVEC_LOC S/R. |
357 |
|
- add vert. coordinate & horiz. indices to output files. |
358 |
|
- change vertical position in initial condition, from index to depth [m]. |
359 |
|
- store horizontal (decimal) indices i,j in common block (instead of coord. x,y) |
360 |
|
(easier to get to a curvilinear grid) ; delX,delY no longer used. |
361 |
|
o pkg/ggl90: a few modifications: |
362 |
|
- fix bottom boundary condition, and interpolation of KappaE |
363 |
|
near top and bottom |
364 |
|
- use same set of viscosity/diffusivity for TKE/momnetum/tracer |
365 |
|
- add smoothing option as in Blanke and Delecluse (1993) (--> ALLOW_GGL90_SMOOTH) |
366 |
|
- add a few options for mixing-length upper limit (--> mxlMaxFlag) |
367 |
|
o rename thetaMin,phiMin -> xgOrigin,ygOrigin |
368 |
|
(maintain temporary backward compatibility, until next checkpoint) |
369 |
|
|
370 |
|
checkpoint61h |
371 |
|
o pkg/diagnostics with "periodic averaging diagnostics": |
372 |
|
fix S/R DIAGNOSTICS_COUNT ; hack diagnostics_out.F to get NetCDF output. |
373 |
|
o pkg/my82: add missing "_d 0" ; update output of exp. vermix.my82 |
374 |
|
o pkg/obcs: fix loop ranges for balancing code |
375 |
|
o pkg/flt: |
376 |
|
- improve criteria for finding which tile owns a float. |
377 |
|
- fix FLT_EXCH for case without MPI ; apply cyclic BC + fix also the MPI case. |
378 |
o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg |
o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg |
379 |
aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling |
aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling |
380 |
with ocean biogeo) |
with ocean biogeo) |
2687 |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
2688 |
- these scheme operate in a similar manner as KPP (without ghat, of |
- these scheme operate in a similar manner as KPP (without ghat, of |
2689 |
course), however there is only one diffusivity that is used for both |
course), however there is only one diffusivity that is used for both |
2690 |
temperature and salinity (and passive tracers)ç |
temperature and salinity (and passive tracers) |
2691 |
o add offline package |
o add offline package |
2692 |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
2693 |
provided by Stephanie Dutkiewicz |
provided by Stephanie Dutkiewicz |