--- MITgcm/doc/tag-index 2007/11/25 22:28:30 1.911 +++ MITgcm/doc/tag-index 2008/02/13 07:43:39 1.957 @@ -1,9 +1,124 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.911 2007/11/25 22:28:30 jmc Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.957 2008/02/13 07:43:39 mlosch Exp $ $Name: $ Notes on tags used in MITgcmUV ============================== +o genmake2: replace (4 times) + make genmake_tc_1.o >> genmake_warnings 2>&1 + with + COMM="$CC $CFLAGS -c genmake_tc_1.c" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 + to make genmake2 always see the value of CC as specified in the optfile. +o generic_advdiff: - prather advection scheme (SOM) coded for CS-grid. + - add diagnostics for 1srt & 2nd Order moments and sub-grid variance. + - modify verification advect_cs test to test SOM-advection on CS-grid. +o pkg/ctrl: + - Rewrite of ctrl_map_ini_ecco.F, + introducing a generic routine (ctrl_map_ini_gen.F). + - Modification of ctrl_bound/adctrl_bound handling control vector bounds. + +checkpoint59n +o pkg/diagnostics: for large number of diagnostics, store diagnostic mate + number in dedicate array "hdiag": + - new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST + with 1 more argument (mate number); modify old version DIAGNOSTICS_ADD2LIST. + - many small changes (integer format) for large number of diagnostics + - start to use DIAGNOSTICS_ADDTOLIST (necessary for diagnostics with + a counter mate) in pkg diagnostics, ptracers, thsice & aim_v23. +o add parameter rotateGrid and Euler angles EulerPhi/Theta/Psi. For + usingSphericalGrid, this allows to define the rotated grid coordinates + via phiMin/thetaMin/dxSpacing/dySpacing, etc., but then re-compute the + geographical coordinates according to the inverse of the rotation defined + by the Euler angles, so that Coriolis parameter and online-interpolation by + exf works with the geographical coordinates on XC/YC/XG/YG. + Naturally, this feature does not work with all packages, so some + combinations are prohibited in config_summary (flt, flt_zonal, ecco, + profiles), because there the coordinates are assumed to be regular + spherical grid coordinates. +o pkg/gmredi,ctrl,ecco,autodiff,grdchk and model/src,inc: + - introduce isopycnal diffusion coefficient control. +o tools/adjoint_options: + - additional control vector components. +o pkg/mnc: have mnc create marginally meaning full coordinate variables + (that is the grid indices) if usingCurvilinearGrid and NOT EXCH2 +o pkg/mypackage: + - add example of read/write pickup for state-var ; + - add entry points to the main code for state-vars diags & write-pickup. +o pkg/exf: rewrite of exf_getffieldrec.F to properly deal with year + transitions for useExfYearlyFields + - add new subroutine that determines the file to read from for + use*YearlyFields = .TRUE. and .FALSE. + - add a verification experiment to global_with_exf that tests + useExfYearlyFields with USE_EXF_INTERPOLATION defined +o pkg/obcs/exf: add useOBCSYearlyFields (=.FALSE.) to obcs with exf in + analogy to useExfYearlyFields; rearrange obcs_prescribe_read: two new + subroutines (which could be generated from a template, because they are + almost identical), for now they are included in obcs_prescribe_read.F for + simplicity +o pkg/exf: + - add a little more diagnostic to exf_interp_read (in analogy to + mds_read_field, can be turned off with debugLevel < debugLevA=1) + - improve vectorizability of exf_interp for TARGET_NEC_SX, makes code + ugly but fast by unrolling short inner loops, inserting a unroll=8 + directive in routine lagran, and splitting a loop and making do while the + outermost loop (the latter requires the intoduction of index arrays) +o pkg/obcs: replace obcs_apply_area/heff/hsalt/hsnow with obcs_apply_seaice +o pkg/seaice: moved DIFFERENT_MULTIPLE from seaice_model to seaice_dynsolver + http://forge.csail.mit.edu/pipermail/mitgcm-devel/2008-January/003173.html +o verification/seaice_obcs: updated for restart test and latest options +o pkg/seaice: add a new flag SEAICEuseTEM to use a slightly different + ice rheology (so-called truncated ellipse, that gets rid of tensile stress); + for now this is only available for the C-grid code and also within + #ifdef SEAICE_ALLOW_TEM, because this option may slow down the EVP code + +checkpoint59m +o pkg/seaice: use different time constant for melting (SEAICE_gamma_t) + and freezing (SEAICE_gamma_t_frz) ice due to mixed layer temperature +o gad_som : fix flux output (& diagnostics) to have same units as other + advection scheme fluxes (was previously multiplied by deltaT). +o added verification/seaice_obcs both to test seaice open boundaries + and to provide an example matlab scrpt for generating them +o added verification/lab_sea/input.salt_plume for testing pkg/salt_plume +o pkg/salt_plume: clean up salt_plume_frac.F to + remove redundancy in PlumeMethod 1 and 4 +o pkg/kpp: added saltplume diagnostics +o pkg/obcs and pkg/seaice: + - do not set uice and vice to zero when OB*icefile are unspecified + - OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default + - moved seaice tracer obcs after call to seaice_growth +o pkg/salt_plume: added various options for salt plume depth + criterion and for vertical distribution of the salt + +checkpoint59l +o pkg/ptracers: new version of ptracers pickup: + read meta file and write only fields which are needed to restart. + ( same logic as main pickup file ; also using pickupStrictlyMatch ) +o pkg/seaice: + - add timescale for melting due to warm mixed layer as a means of + setting SEAICE_availHeatFrac more conveniently + - add a CPP-flag/runtime parameter check for flooding algorithm + - reformulated availHeat in seaice_growth.F to be independent of AREA +o change units attribute of EmPmR netcdf variables to kg/m^2/s to reflect recent + unit changes +o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint +o cg2d.F: add 3 compiler directives that speed up this routine by 30% on a NEC + SX vector computer. +o pkg/seaice: + - removed SEAICE_FFIELDS.h and seaice_get_forcing.F + seaice forcing fields can now be read only through pkg/exf + - removed some unused halos +o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP +o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL + or U/VICE from U/VWIND before computing U/VSTRESS + +checkpoint59k +o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between + dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. +o fix un-initialised variable problem (in mom_vecinv & shap_filt): + all experiments pass when compile with un-initialised var. checking option. +o added pkg/salt_plume o script to test restart (for now, in MITgcm_contrib/jmc_script) o pkg/seaice: new read/write pickup version. read meta file and write only fields which are needed to restart.