--- MITgcm/doc/tag-index	2006/03/21 13:00:33	1.637
+++ MITgcm/doc/tag-index	2006/05/30 22:49:21	1.662
@@ -1,9 +1,88 @@
-$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.637 2006/03/21 13:00:33 mlosch Exp $
+$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.662 2006/05/30 22:49:21 mlosch Exp $
 $Name:  $
 
     Notes on tags used in MITgcmUV
     ==============================
 
+o couple pkg/thsice and pkg/exf (as a preparation for coupling pkg/thsice 
+  to pkg/seaice): 
+  - new routines thsice_map_exf and thsice_get_exf provide the interface
+  - add an additional formal parameter to thsice_solve4temp 
+o pkg/exf:
+  - add new fields wspeed, snowprecip (to be able to couple to thsice)
+  - correct Stefan-Boltzmann constant
+  - new parameter for longwave surface emittance
+  - separate some stuff from exf_bulkformulae into new routines  
+    exf_radiation, exf_wind
+  - add new parameters and constants: longwave emissivity for ocean, ice 
+    and snow, evaporation parameters over ice
+o pkg/thSIce:
+- split thsice_step_fwd.F in 2 S/R: thsice_step_temp.F & thsice_step_fwd.F
+- put i,j loops inside S/R: THSICE_ALBEDO, THSICE_SOLVE4TEMP, THSICE_EXTEND
+   and THSICE_CALC_THICKN
+- for now, call to THSICE_GET_BULKF remains inside i,j loops.
+- add CPP option: ALLOW_DBUG_THSICE and header file THSICE_DEBUG.h
+  to make debugging easier.
+- affects results (@ truncation level) of global_ocean.cs32x15.thsice: update output
+o pkg/bulk_force: 
+  - clean-up comments and parameters ; 
+  - add new Bulk-Formulae from Large and Yeager, 2004, NCAR/TN-460+STR ;
+o fix bug in aim+thsice albedo: snow & ice thickness arguments were switched;
+  generate new output for test-experiment: aim.5l_cs.thSI
+o results_ad : rename "output.txt_adm" to "output_adm.txt" and change
+  testreport accordingly
+
+checkpoint58e_post
+o SEAICE_CGRID adjoint done
+o R_STAR adjoint implemented.
+  * Seems to just work (based on global_ocean.90x40x15/code_ad_nlfs/ )
+  * need to sort out init. of h0facc, etc.
+o Make pkg/profile fully independent of ecco,cost, etc. stuff
+  to be able to use it in pure forward.
+
+checkpoint58d_post
+o upgrade simple test-experiment to tutorial example:
+ step.1: duplicate the experiment and (step.2) will remove the old copy.
+  tutorial_barotropic_gyre      <- copy of exp0     (R1:barotropic_gyre_in_a_box)
+  tutorial_baroclinic_gyre      <- copy of exp1     (R1:baroclinic_gyre_on_a_sphere)
+  tutorial_global_oce_latlon    <- empty for now    (R1:global_ocean_circulation)
+  tutorial_global_oce_biogeo    <- copy of dic_example
+  tutorial_deep_convection      <- almost like exp5 (R1:nonhydrostatic_deep_convection)
+  tutorial_plume_on_slope       <- copy of plume_on_slope
+  tutorial_tracer_adjsens       <- copy of carbon   (R1:tracer_adjoint_sensitivity)
+  tutorial_global_oce_optim     <- empty for now (David ?)
+  tutorial_global_oce_in_p      <- copy of global_ocean_pressure
+ some tutorials (R1) were already checked-in under tutorial_examples in release1_branch
+o correct a sign problem in cost_scat.F
+o obcs and ptracers: fix boundary conditions for advections schemes 
+  with larger stencil 
+o thsice adjoint: start
+o mom_vecinv: add ISOTROPIC_COS_SCALING flags to mom_vi_hdissip for 
+  completeness
+o mom_fluxform: fixing the mutual use of ISOTROPIC_COS_SCALING 
+  and COSINEMETH_III, add comments in default CPP_OPTIONS.h
+o ptracers adjoint:
+  * avoid extensive recomputatations
+  * fix missing re-init. of gptr (missed by TAF)
+o obcs: add a flag (OBCSprintDiags, defaults is true) that allows 
+  me to turn off the excessive output to STDOUT that this package produces
+o move NH metric terms & 3.D Coriolis S/R to pkg/mom_common
+  and add those terms in Vector-Invariant formulation.
+o in ctrl pkg, if ALLOW_CAL, use monthly mean controls 
+  if the control period (xx_hfluxperiod etc) is 0
+o in profiles pkg, clean routines and fix details
+o in ecco pkg, reading ssh data: 
+  fix problem in case the model does not start at iter0=0
+o fix mnc-pickup/restart for ptracers
+o new package prifiles:
+  code to compute profile-based cost by Gael Forget
+  (modifs in ecco, ctrl, autodiff)
+o Benign bug fix in initialization (spotted by M. Mazloff) of
+  ctrl_set_globfld_xz.F ctrl_set_globfld_yz.F
+
+checkpoint58c_post
+o adjoint: finish NLFS adjoint and provide reference output in
+  verification/global_ocean.90x40x15/results_ad_nlfs
 o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the 
   documentation of CICE. Turn on by defining SEAICE_ALLOW_EVP in
   SEAICE_OPTIONS.h and SEAICEuseEVP=.true. in data.seaice. Works only