--- MITgcm/doc/tag-index 2001/08/21 16:38:41 1.47 +++ MITgcm/doc/tag-index 2002/05/01 01:35:30 1.71 @@ -1,10 +1,149 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.47 2001/08/21 16:38:41 heimbach Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.71 2002/05/01 01:35:30 jmc Exp $ Notes on tags used in MITgcmUV ============================== +checkpoint45a_post +o compute Rho over the whole domain (extend iMin,jMin indices) +o specific exchange for X-slice domain (case Ny=1) +o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code +o solve_for_pressure : set cg2d_x to zero where OBCS are applied + +checkpoint44h_post = checkpoint45 +o Fix to restore differentiability: + place at which packages_init_variables is called in + initialise_varia is crucial for reverse control flow. +o modifications in GMRedi to enable stable adjoint + (corresponding modif's in thermodynamics, dynamics) +o added missing hook for sponge layer code in external_forcing +o modified test cost functions +o storing in gad_advection (plus removal of write(0,*)! +o missing headers TR1.h added in convective_adjustment routines +o errorMessageUnit set non-equal zero in eeboot + (conflict on some platforms, e.g. IBM SP3) +o modified carbon verif. + +checkpoint44h_pre +o vertical grid option: allow to put the Interface at the middle between + 2 cell-centers ; replace delZ in pkg/kpp by drF. +o GM Advective form: Tracers are advected using the residual transport (= + Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. + +checkpoint44g_post +o fix surface correction term in multiDimAdvection (affects plume_on_slope + results) ; ifdef missing in thermodynamics.F + +checkpoint44f_pre,checkpoint44f_post +o added PTRACERS package + This allows an arbitrary number of passive tracers to be integrated + forward simultaneously with the dynamicaly model. + + Implemented so far: + - basic forward algorithm (time-stepping, advection, diffusion, convection) + - I/O and checkpointing + - GM/Redi *but* using the GM/Redi coefficient of Salt + + Not implemented so far: + - KPP + - OBCS + + No specific example supplied (yet) but global_ocean.90x40x15 has the + necessary data.ptracer file. Simply use -enable=ptracers and uncomment + line in data.pkg. + + This package is disabled by default since it increases storage. + + +o testscript: added -cleanup option +o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter + b) enable to filter 2D fields. + +checkpoint44e_pre,post +o re-wrote convective adjustment to use pre-calculated weights + Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F + Adds: model/src/convective_weights.F, convectively_mixtracer.F + Original calls to convect() still in place. + +chkpt44d_pre,post +o added missing EXCLUDE_MONITOR flags +o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi + (incompatible typ in MIN/MAX expressions caused problems + on IBM SP3) +o in genmake added variable MAKEDEPEND + plus resetting for case SunOS +o added timer_stats.c routine for IBM SP3 +o removed variables in dynamics +!!! I forgot to create tag chkpt44d_pre !!! +!!! But chkpt44d_pre = chkpt44c_post !!! + +o real fresh water flux implemented with non-linear free-surface. + +chkpt44c_pre,post +o few fix (mask in shap_s2, EmPmR in external_field_load, + USE_NATURAL_BCS in solve_for_P); +o add arguments myIter & myTime to S/R obcs_calc & solve_for_P + +checkpoint44b_pre/_post +o merge of relevant stuff from the ecco-branch: + - genmake: removed $S64 overwrite for case SunOS + - pkg/exf: update and corrections for field swapping and obcs + - pkg/ecco: parameter lists for the_model_main, the_main_loop + harmonized between ECCO and MITgcm + - pkg/autodiff: added flow directives for obcs, mdsio_gl_slice + updated checkpointing_lev... lists for obcs + - model/src: minor changes in forward_step, plot_field + added directive for divided adjoint in the_main_loop + - pkg/mdsio: added mdsio_gl_slice + +o check parameters & config (chkpt44a_pre,post) +o OBC and NonLin_FrSurf. + +checkpoint44 +o fix bug in mom_vi_del2uv +o select when filters are applied ; add options to zonal_filter (data.zonfilt) +o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) +o update AIM experiments (NCEP input files) +o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) +o added some stuff for AD + +checkpoint43 +o added two new advection tests +o added global 4x4 degree ocean test +o added test of H&S94 with free surface on cube +o some final mods for gradient check, adjoint,... + +checkpoint42 + Fixed AD-related problems: +o Store directives up-to-date with re-arranged Adams-Bashforth + (mainly thermodynamics.F) +o New store directives for multi-dim. advection schemes + * new CPP flag ALLOW_MULTI_DIM_ADVECTION + * new common block and key passkey + (mainly gad_advection.F) +o Modified store directives for split of dynamics/thermodynamics + for the case ALLOW_KPP +o Cleaned argument list for timestep_tracer.F + +checkpoint41 +o re-formatted/added comments in prologues of key subroutines + to work with protex + checkpoint40 -o all changes of checkpoint40pre? +o moved calc_gs, calc_gt and calc_tr1 back to model/src +o added FLT (floats) package from Arne along with demo. experiment +o re-arranged Adams-Bashforth scheme for tracers to allow easier + implementation of forward-in-time forcing terms +o more mods for non-linear free-surface including new variable +o modified multi-dim method to work on cube +o bug fix in KPP (from DM) + +checkpoint40pre9 +o added DST advection schemes +o fix MPI bug on SGI's +o modifications for non-linear free-surface +o fixed conditionals for fixed flow/passive tracer only mode +o added tension/strain form of stress tensor +o changes to commenting of arguments for TAF/TAMC +o added/updated many matlab scripts +o added multi-dimensional advection method for tracers + +checkpoint40pre8 o new package rw/ Added method for dumping intermediate local arrays: mdsio_writetile - same as mdsio_writefield except works from inside