--- MITgcm/doc/tag-index 2003/10/27 22:56:29 1.196 +++ MITgcm/doc/tag-index 2003/12/16 15:16:39 1.226 @@ -1,8 +1,152 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.196 2003/10/27 22:56:29 heimbach Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.226 2003/12/16 15:16:39 jmc Exp $ Notes on tags used in MITgcmUV ============================== +checkpoint52d_post +o change global_ocean.cs32x15 because of Pb with GM on CS-grid. +o changes to permit hi-res, cubed-sphere, configuration + - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F + - added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F + - added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation + of surface winds for the cube + (A verification experiment, based on global_ocean.cs32x15, but with + pkg/seaice turned on and with on-the-fly interpolation from the NCEP + Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice, + complete with example surface forcing files and matlab scripts to look + at the output and compare it with that of global_ocean.cs32x15.) +o packages pickup: $PKG_write_pickup called from packages_write_pickup ; + but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code + to conform to the common rule. +o check-in the first version of the coupler + interfaces for multi-components + set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI. + - imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD). + - atmosphere: use pkg aim_v23 ; no sea-ice for now. + - ocean and atmos. share the same horizontal grid (no interpolation). + - exchanges between component and coupler is done in forward_step +o new verification experiment, cpl_aim+ocn: + coupled ocean - AIM atmosphere on cs32 grid. + +checkpoint52d_pre +o surface flux time-av diagnostic modified for NLFS & RealFreshWater +o add call to AIM pendant S/R in external_forcing & external_fields_load.F + +checkpoint52c_post +o Fixing OPTIONS files for use of exf: + - ALLOW_ECCO not needed + - ECCO_CPPOPTIONS.h should not be included from + EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h + as has been the case in the past + - All cal/exf related options are currently set in + single header file. Should remain so until we + agree on a consistent new policy. +o Removed all CPP options for cal package. + cal has no more CPP options. +o modified STOREs in GAD_ADVECTION +o corrected key comp. for passkey + +checkpoint52b_post +o new version: "thsice" of thermodynamic sea-ice pkg: + - only 1 call from "forward_step"; conserve energy, fresh-water & salt. + - modify fluxes but do not change theta directly; + - light cleaning of bulk_force pkg (still needed with thsice). + - add forcing fields + data files in global_ocean.cs32x15/inp_thsice + + output_thsice.txt to test thsice & bulk_force pkgs. +o put back grid & coriolis monitor output. +checkpoint52b_pre + +o call "do_the_model_io" at the beginning (=> dump initial state) +o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) +o sort out interplay between tamc.h and PTRACERS_OPTIONS.h + (need info on NUMBER_OF_PTRACERS) +o missing PTRACERS headers in some routines +o default tamc.h in pkg/autodiff supposed to crash + to ensure proper customization + +checkpoint52a_post +o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp + - moved surfaceTendencyTice from pkg/seaice to main code + - subroutine FREEZE_SURFACE now limits only surface temperature + and is called in FORWARD_STEP (if allowFreezing=.TRUE.) + => new output.txt for global_ocean.cs32x15 & global_with_exf + - keep the old version of FREEZE for backward compatibility; + global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE. + - corresponding modifs for TAF directives +o added surface flux output variables to TIMEAVE_STATVARS +o time-averaged output for pkg/ptracers +o fix problem with ECCO-related divided adjoint + snapshot file was missing some ad-variables, + but no warning issued by TAF + +checkpoint52a_pre +o some bug fixes for #undef REAL4_IS_SLOW + +checkpoint52 = ecco_c52_e35 +o after testing adjoints of checkpoint51u_post + +checkpoint51u_post +o this is the post-merge tag of the ecco-branch + (needs another clean checkout and re-testing) +o various natl_box_adjoint configs and results + but no input fields +o obcs adjoint not yet merged! +o adding ECCO global 1x1 and 2x2 degree configs +o updated/extended some store directives for seaice +o pkg/ecco now containes ecco-specific part of cost function +o top level routines the_main_loop, forward_step + supersede those in model/src/ + previous input data.cost now in data.ecco + (new namelist ecco_cost_nml) +o in ctrl/ cleaned some cross-dependencies and updated CPP options + +checkpoint51t_post +o this is the pre-merge tag of the ecco-branch + +checkpoint51s_post +o cleanup: removed various obsolete #define-s +o pkg/grdchk + - renamed 'ph-grd 3' to 'grad-res' + - merged from ecco-branch + (remaining bug fixes for obcs gradient checks) + - additional high-precision output for testreport + (grep for 'precision_grdchk_result') + +checkpoint51r_post +o cleaned up or removed CPP_OPTIONS.h files +o updated results for some of the tests to reflect the new + optfiles (-ieee: -O0 instead of -O3) + +checkpoint51q_post +o cd_code: + - moved cd_scheme.F -> cd_code_scheme.F + - separate read_checkpoint from cd_code_ini_vars.F + - separated cd_code part from write_checkpoint + - updated AD_SOURCE, generated .flow + - added CD_CODE_VARS.h to the_main_loop + - Moving cd_code specific store dir.s to pkg/cd_code +o ctrl package totally restructured + - pack/unpack now optional and decoupled from + xx_/adxx_ I/O + - ctrl_pack/unpack cleaned + (new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F) + - confined inclusion of AD_CONFIG.h to where necessary. +o genmake2: changed AD dependencies from SRCFILES to AD_FILES + +checkpoint51p_post +o create initial cd_code package + - WARNING: the initialization of fields within packages + is broken because INI_FIELDS (where READ_CHECKPOINT is + called) is called *before* PACKAGES_INIT_VARIABLES. + This seems to be backwards since + 1) its important to initially zero the entire field including + the "halo" region + 2) zeroing needs to be done *before* reading pickup info + and the pickup call might or might not happen in any + particular run + - this needs an overhaul for R2 +o cleanup verification/*/code/GMREDI_OPTIONS.h +o cleanup testreport + checkpoint51o_post o bringing AD-related verif's up to date with genmake2 - carbon/ @@ -27,6 +171,10 @@ checkpoint51o_pre o undid all of cp51 pending some cleanups and discussion +o added the [#include "AD_CONFIG.h"] statement to all files that need + it for adjoint/tl #defines + o re-worked the build logic in genmake2 to support AD_CONFIG.h + o removed tools/genmake since it no longer works checkpoint51n_post o modifications to make FREEZE flux visible to pkg/kpp