--- MITgcm/doc/tag-index 2003/01/10 01:21:53 1.115 +++ MITgcm/doc/tag-index 2003/10/23 07:14:48 1.194 @@ -1,8 +1,465 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.115 2003/01/10 01:21:53 heimbach Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.194 2003/10/23 07:14:48 dimitri Exp $ Notes on tags used in MITgcmUV ============================== + + +checkpoint51n_post +o modifications to make FREEZE flux visible to pkg/kpp + - moved surfaceTendencyTice from pkg/seaice to main code + - FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP + - subroutine FREEZE now limits only surface temperature + (this means new output.txt for global_ocean.90x40x15, + global_ocean.cs32x15, and global_with_exf) +o added surface flux output variables to TIMEAVE_STATVARS + +checkpoint51n_pre +o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F +o added [#include "AD_CONFIG.h"] to all files that use the following + defines: + - ALLOW_ADJOINT_RUN + - ALLOW_TANGENTLINEAR_RUN + - ALLOW_ECCO_OPTIMIZATION + +checkpoint51m_post +o incorporating changes to get TAMC/TAF working in genmake2 + - added new TAMC/TAF targets to the Makefile + - various cleanups related to package handling + - these changes should have no impact on the forward model + +checkpoint51l_post +o changes to pkg/cal and pkg/exf that allow and speed-up long integrations + - faster algorithm for cal_addtime.F + - higher precision arithmetic, where needed + - pkg/exf *startdate variables changed from calendar date to + model integration time + +checkpoint51l_pre +o add salt flux to forcing fields (used when salty sea-ice forms or melts) +o enable to apply restoring on S & T only in a latitude band. +o update output (external_forcing_surf modif. change truncation errors) + global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box + +checkpoint51k_post +o change default to: useNHMTerms=.FALSE. + - new output.txt for atmos. exp (NHMTerms were wrong but now turned off): + adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 + - new output.txt for idealized oceanic exp (NHMTerms are now turned off): + exp1, ideal_2D_oce + - change data file of oceanic exp (leave the results unchanged for now) + exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box +o set gravitySign automatically according to the vertical coordinate used + (and change sign: back to "logical" value: +1 when R increases downward) +o added an include barrier to the default CPP_OPTIONS.h and + removed the #include "PACKAGES_CONFIG.h" from it +o fix a bug in mom_fluxform (from chk51j_post) + +checkpoint51j_post +o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ +o adjusted some flow directives (dynamics, thermodynamics) +o added cubed-sphere case to test cost function +o heckpoint_lev?_directives.h now include + pkg-specific directives, whenever those are enabled. +o Moving pkg-specific flow directives to corresponding pkg + Moving pkg-specific differentiation list to corresponding pkg + Moving pkg-specific checkpoint-lev storing to corresponding pkg + ---> conventions are + - pkg_ad.flow + - pkg_ad_diff.list + - pkg_ad_check_lev?_dir.h + +checkpoint51i_post +o merge of the branch-genmake2 + - knowingly breaks the older genmake + - automatic generation of all ALLOW_${PKG_NAME} defines + - new testreport supersedes older testscript +o large number of package inclusion and header cleanups +checkpoint51i_pre + +o new output for adjoin of global ocean vector invariant +o fix for checkpoint of thermodynamic seaice and bulk_force +o Steph gchem various cleanups + +checkpoint 51h_pre +o fixed some single quotes +o modify gchem pkg to be more versatile +o modifications to clean up dic pkg +o add pkg/cfc + +checkpoint51g_post +o provide links for ARPACK and ADM*TLM +o start removing verification/vero/ +o update AD-related stuff + (in particular some IF-statements in model/src/ routines) +o adding to verification/global_ocean.90x40x15/ adjoint of + vector invariant setup + +checkpoint51f_post +o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) +o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation + of tracer Green's fucntions for ocean inversion project. + +checkpoint51f_pre +o Added on-the-fly spatial interpolation capability + "USE_EXF_INTERPOLATION" to pkg/exf. + - This is a temporary Cartesian-grid hack until + the super-duper ESMF coupler becomes available. + - See verification/global_with_exf/README for usage example. + - Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid + flags and modified pkg/seaice accordingly. +o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, + and pkg/kpp/kpp_transport_ptr.F for dealing with tracer + non-local transport term. + +checkpoint51e_post +o pkg/mom_vecinv: + - changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) + - add time-ave diagnostic of vorticity advection. +o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. +o atmospheric geopotential: - include water vapor effect; + - use p^kappa in p* scaling. +o land pkg: read initial state from files. +o AIM : add stratospheric drag in the upper level + +checkpoint51d_post +o change function ILNBLNK (=> last non-blank char.) to return zero + (instead of the string length) when the string. char is empty +o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) +o modif's to restore TAMC compatibility + - avoid "_d" constructs in PARAMETER declarations + - avoid interrupting lines by comment lines +o Use cluster local disks for purely local I/O + vs. globally visible disks needed for ctrl stuff + (merged from ecco-branch) + - new active_file_loc... and mdsio_..._loc routines + - affected packages: autodiff, ctrl, grdchk, mdsio + +checkpoint51c_post +o introducing integer flag debugLevel + - debLevZero: suppress all output + - debLevA: standard + - debLevB: equivalent to current debugMode=.TRUE. +o introducing pathname variable mdsioLocalDir for mdsio + that can be specified at runtime + (relevant for cluster I/O to local disk) +` +>>>checkpoint51b_post +adjoint of ptracers +o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM +o extended state in checkpoint_lev?, etc. +o alternative ctrl/cost with tr1 or ptracer +o new comlev1_bibj_ptracers +o new ptracers.flow +o made ptracers_forcing same as external_forcing_s +o added verification for adjoint with ptracers + - adm. grdchk fail so far + - tlm. grdchk OK + - checked tapelev/comlev recomputations: OK +<< affects results of glob_oce_pressure (different truncation error) + update output.txt of ideal_2D_oce & global_ocean_pressure + +checkpoint48d_pre +o in preparation for r*: + new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. + pass the 2 comp. of the grad. as arguments to momentum S/R. + but for the moment, only used if it does not change the results. +o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP + +checkpoint48c_post +Modifications in treatment of initial flux forcing controls +to avoid extra storing of flux fields. + +checkpoint48c_pre +o Added tidal_basin_2d experiment (currently 1D!) +o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) + +checkpoint48b_post +o r* coordinate added in #ifdef NONLIN_FRSURF block. + (modification to pressure gradient not yet implemented) +o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports + (for U & V) that are used for vertical advection of momentum. + +checkpoint48a_post +o In preparation for r*, use temp. array to compute vertical transport + in flux-form momentum pkg. => change results of few test-exp. + Update output of: exp4, exp5, front_relax, global_ocean_pressure, + lab_sea, natl_box & plume_on_slope + +checkpoint48 +o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') + +checkpoint47j_post +o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. +o moved adexch from forward_step to addummy_in_stepping +o added exch in ctrl_map_... +o aveFreq.=0. at end of cost_final to avoid overwrite in + reverse checkpointing loop +o Yet more changes in gmredi: + * adgmredi_calc_tensor + avoiding all recomputation of gmredi_slope_limit + * adgmredi_x/y/rtransport + added flag for excessive storing to avoid recomp. of + u/v/rtans, dTdx/y/z + -> this is not really necessary and very memory-consuming + * adgmredi_slope_psi: + consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff + * gmredi_slope_limit + re-activated full calculation of taperfct for case 'ac02' +o updating verification/ adjoints of carbon, global_ocean.90x40x15 + +checkpoint47i_post +o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. +o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) + default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) +o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) +o gmredi: fix few bugs. + +checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) +This will be a good checkpoint to plug into the ecco-branch. +o few modif.'s to get latest version adjointed + (mainly kick out code in ini_linear_phisurf) +o modif's to run adjoint with exactConserv +o case GM_BOLUS_ADVEC should be cleaned + S/R gmredi_slope_psi should be cleaned +o verification/carbon now has exactConserv=.TRUE. + checkpoint47g_post o time-average AIM output: becomes independent from statvars time-average (can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH)