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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that |
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is called from DO_THE_MODEL_IO |
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- rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE |
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- introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq) |
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- clean up PTRACERS_WRITE_TIMEAVE a little |
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o add another verification experiment that tests both the cfc-pkg and |
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the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with |
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reactive tendencies treated inline with regular timestepping |
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o testreport previously did a lousy job of comparing small numbers, so |
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we (Ed and Martin) changed the way the cut-off of 1.e-12 is |
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implemented in the little c-progam tmp_cmpnum.c which is embedded in |
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testreport. |
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o ptracers_monitor: bug fix for MPI |
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checkpoint56a_post |
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o GCHEM: finish reorganizating the package |
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- forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency |
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(introduces another 3D-array for each passive tracer, but only if |
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GCHEM_SEPARATE_FORCING is undefined. For GCHEM_SEPARATE_FORCING |
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gchemTendency is not needed because the timestep is done separately) |
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- gchemTendency is added to gPtr in GCHEM_ADD_TENDENCY |
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- GCHEM is now---more or less cleanly---separate from PTRACERS |
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- to bo done: handling of surfaceForcingPtr that is needed for KPP not |
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so clear to me how that should be done in a general way. |
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o CFC: improve formatting of output in CFC_ATMOS |
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o PTRACERS: |
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- rename GCHEM_MONITOR to PTRACERS_MONITOR and call it from MONITOR, so |
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that ALL experiments with ptracers enable can be checked. This makes |
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GCHEM_MONITOR obsolete. |
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- include a runtime parameter PTRACERS_monitorFreq that defaults to |
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monitorFreq |
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- set default PTRACERS_write_mdsio to false if PTRACERS_write_mnc is true |
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o add PTRACERS (PTR0[1-5]) to testreport output |
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o exf_check_range: |
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* default changed to .TRUE. |
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* will check values for niter0 if debLevA, every timestep if debLevB |
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* STOP in exf_check_range if 'out of range' |
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* range chosen generous to allow for potential extema |
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TBD: a version with stricter range |
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permitted range would be runtime parameters |
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o GMredi: |
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- fix ldd97 slope limit ; extend valid domain of Psi-Bolus ; |
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- change S/R GRAD_SIGMA to be valid in the overlap on CS-grid. |
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- change the default GMREDI_OPTIONS.h: compile everything except Visbeck |
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o GCHEM: |
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- move call to GCHEM_FORCING_SEP, so that it is now called before |
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the blocking exchanges to avoid computing halos in GCHEM_FORCING_SEP |
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- introduced a useGCHEM runtime flag and applied it everywhere. |
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- renamed PTRACERS_SEPARATE_FORCING to GCHEM_SEPARATE_FORCING; |
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this flag is now only visible within GCHEM-pkg routines. |
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- moved gchem_forcing_int temporarily into ptracers_forcing, this will |
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be replaced by a 3D array that is computed before thermodynamics; for |
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this, the tracer ID iTracer had to be included into the parameter list |
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of ptracers_forcing |
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- set up forward_step to call gchem_forcing, that will replace |
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gchem_forcing_int in ptracers_forcing |
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- cleaning up |
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o small cleaning of exch2: remove files that are also in eesupp/src |
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checkpoint56 |
checkpoint56 |
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o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0 |
o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0 |
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o mnc: cleanup "full" files--fixes out-of-memory problem |
o mnc: cleanup "full" files--fixes out-of-memory problem |
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