1 |
$Header$ |
$Header$ |
2 |
|
$Name$ |
3 |
|
|
4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
checkpoint57l_post |
8 |
|
tag before updating tutorials (pre-release-2) |
9 |
|
o add cos & sin of grid-direction orientation angle (curvilinear grid only, |
10 |
|
for output and interpolation of input fields onto model grid) |
11 |
|
o fix radius in mom_v_metric_cylinder.F (wrong by dy/2). |
12 |
|
Affects results of exp. rotating_tank ; update output.txt. |
13 |
|
o pkg/diagnostics: 2 new S/R to fill a diagnostics using a scaling factor |
14 |
|
and taking the square quantity and/or using a fraction-weight field. |
15 |
|
o fix aim_diagnostics_init.F mate numbers. |
16 |
|
o add mnc output capability to diagnostics/diagstat and update |
17 |
|
our cvsignore files for the ACSII output generated |
18 |
|
|
19 |
|
checkpoint57k_post |
20 |
|
o lab_sea now uses diagnostics package and provides a suite of |
21 |
|
new EXF diagnostics output. |
22 |
|
|
23 |
|
checkpoint57j_post |
24 |
|
o exf |
25 |
|
* bug fix in exf_bulkformulae for psimh (spotted by Eliyahu Biton): |
26 |
|
Bracket missing in eqn. for psimh (eqn. 7 of Large & Pond, 1982); |
27 |
|
terms -2*ATAN(x) + pi/2 were added to both stable and unstable case. |
28 |
|
* extended diagnostics output |
29 |
|
- now includes all EXF variables |
30 |
|
- hs, hl moved to common block |
31 |
|
- separate S/R for diagnostics, called after ctrl vector is added |
32 |
|
- name changed for EXFsw -> EXFswnet, EXFlw -> EXFlwnet |
33 |
|
- EXFqnet contains true Qnet (i.e. includes qsw) |
34 |
|
* updated verif. lab_sea, global_with_exf |
35 |
|
* Rearranging hflux (exf_mapfields -> exf_getforcing) |
36 |
|
to ensure that diagnostics sees a true EXFqnet |
37 |
|
o add matlab scripts for CS-grid vectors (in utils/cs_grid) |
38 |
|
o diagnostics pkg: change pointers so that 1 diagnostic can be used |
39 |
|
several times with different frequencies. |
40 |
|
o mnc-ify the thsice package as requested by Daniel Enderton |
41 |
|
- the monitor--MNC output needs work |
42 |
|
- many attributes need to be added (most are currently blank) |
43 |
|
o mnc-ify theaim_v23 package as requested by Daniel Enderton |
44 |
|
- many attributes need to be added (most are currently blank) |
45 |
|
o remove "groundAtK1" & "rkFac" (replaced by usingPCoords & -rkSign) |
46 |
|
o add Sadourny like discretization to the 4th.O vorticity advection scheme |
47 |
|
o fix bug in rStar code (calc_r_star.F) when used with topo/bathy. |
48 |
|
update output.txt from: aim.5l_cs (& .thSI), cpl_aim+ocn, |
49 |
|
fizhi-gridalt-hs and global_ocean.cs32x15 (& .thsice). |
50 |
|
o fix few little things to avoid floating error with -ftrapuv (ifort v9) |
51 |
|
(ini_spherical_polar_grid.F, calc_r_star.F, monitor/mon_surfcor.F) |
52 |
|
|
53 |
|
checkpoint57i_post |
54 |
|
o Diagnostics package was changed: diagnostic allocation is now deactivated |
55 |
|
by setting an empty file name in the namelist (used to be by setting 0 frequency) |
56 |
|
o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ; |
57 |
|
add 1rst Order upwind vertical Shear. |
58 |
|
o add a quick fix for A/B checkpointing in OFFLINE mode |
59 |
|
o add IGNORE_TIME define and -ignore_time option to genmake2 as an |
60 |
|
end-run around the C/Fortran linking horror in eesup/src/timers.F |
61 |
|
o added pkg/runclock: allows user to terminate run based on wall clock |
62 |
|
o added non-hydrostatic scaling parameter: nh_am2 |
63 |
|
o pkg/my82: futile attempt to make results compiler-independent by adding |
64 |
|
some "_d 0", etc. no effect. |
65 |
|
o for mnc output, fill the 'T' coordinate var with myTime and create a |
66 |
|
separate 'iter' variable for iteration count |
67 |
|
o pkg/diagnostics: |
68 |
|
add new capability: output of Global/Regional & per-level statistics ; |
69 |
|
tested against monitor output (including land & thSIce) on various exp. |
70 |
|
o make seaice-pkg I/O type flags (MNC/MDS) more standard. |
71 |
|
|
72 |
|
checkpoint57h_done |
73 |
|
tag after changing user customized files (DIAGNOSTICS_SIZE.h, |
74 |
|
data.diagnostics, data.gchem, data.ptracers) is done. |
75 |
|
|
76 |
|
o pkg/diagnostics: prepare for Global/Regional statistics. |
77 |
|
add 2nd namelist in data.diagnostics and update DIAGNOSTICS_SIZE.h |
78 |
|
o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE |
79 |
|
and rename it: DIFFERENT_MULTIPLE |
80 |
|
|
81 |
|
checkpoint57h_post |
82 |
|
o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers |
83 |
|
o pkg/diagnostics: change output frequency, now in seconds (instead |
84 |
|
of Nb of iterations). This requires to change data.diagnostics. |
85 |
|
checkpoint57h_pre |
86 |
|
|
87 |
|
o in mnc, let the user create the output dir if both mnc_outdir_date |
88 |
|
and mnc_outdir_num are false |
89 |
|
o add fflags() to pkg/diagnostics which allows one to specify, on a |
90 |
|
per-file basis, the file precision [default behavior is unchanged] |
91 |
|
o added diagnostics to pkg/kpp, including computation of mixed layer |
92 |
|
depth based on a temperature/density criterion |
93 |
|
o updated verification/natl_box to test the new pkg/kpp diagnostics |
94 |
|
o bugs fixed (with useAbsVorticity=T & with useJamartMomAdv=T) |
95 |
|
o test AB-3 code with 4th.Order advection scheme (advect_xy/input.ab3_c4) |
96 |
|
o fix mnc flags in pkg/seaice so that they are "owned" by seaice, |
97 |
|
not mnc -- this mistake was found by JMC and is now corrected |
98 |
|
|
99 |
|
checkpoint57g_post |
100 |
|
o add Adams-Bashforth 3rd Order time stepping: |
101 |
|
- default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3) |
102 |
|
- not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ... |
103 |
|
checkpoint57g_pre |
104 |
|
|
105 |
|
o make lambda[Theta,Salt]ClimRelax spatially varying |
106 |
|
(default remains spatially uniform constant based on tau) |
107 |
|
o added new control variables |
108 |
|
* init. uVel, vVel, etanN |
109 |
|
* lambda[Theta,Salt]ClimRelax |
110 |
|
o separate masks used for ctrl_pack/unpack 'from write_grid' output |
111 |
|
(suggested by G. Forget) |
112 |
|
|
113 |
|
checkpoint57f_post |
114 |
|
o add parameter "baseTime" = model base time = time at iteration zero |
115 |
|
new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to |
116 |
|
account for baseTime shift |
117 |
|
o move Coriolis arrays from PARAMS.h to GRID.h |
118 |
|
checkpoint57f_pre |
119 |
|
|
120 |
|
o mnc-ifying the seaice package |
121 |
|
o introduced an alternative length scale calculation for use in the limiting |
122 |
|
maximum viscosity (off by default, see mom_vi_hdissip.F for details) |
123 |
|
o S/R ptracers_calc_diff: argument list bug for CALL KPP_CALC_DIFF_S |
124 |
|
o added modified Leith scheme with viscosity proportional to grad(Hdiv) |
125 |
|
as well as grad(vort3). Made it compatible with both approximate form |
126 |
|
for the cubed sphere and full form of these gradients. Added flag |
127 |
|
useFullLeith to select between approximate and full form. |
128 |
|
o add "d0" in getcon.F to reduce differences between compilers/platforms |
129 |
|
update output.txt of exp. fizhi-gridalt-hs |
130 |
|
o change port_rand funtion to allow to set the seed. |
131 |
|
o fix obscure MNC bug involving conversion between reals and integers |
132 |
|
- it caused no problems with certain (eg. gcc, ifc) compilers but the |
133 |
|
new version is now more standards-compliant |
134 |
|
o adjoint-related modifications |
135 |
|
* gad_dst3_adv_?: to be able to use advscheme=30 in adjoint |
136 |
|
* gad_calc_rhs: fool adjoint, revert to advscheme=30 in reverse when using 33 |
137 |
|
* mom_vi_hdissip: to be able to use Leith scheme in adjoint |
138 |
|
|
139 |
|
checkpoint57e_post |
140 |
|
o Adding eddy stress controls a la Ferreira et al. |
141 |
|
checkpoint57e_pre (actually was tagged: eckpoint57e_pre) |
142 |
|
|
143 |
|
o fizhi pkg: fix AtoC and CtoA when called with same input & output array |
144 |
|
update output.txt of exp. fizhi-gridalt-hs |
145 |
|
o add more "Z" dimensions and associated coordinate vars to MNC |
146 |
|
o pkg/exf: added twoDigitYear capability for option useExfYearlyFields |
147 |
|
o parameter calendarDumps: when set, approximate months (30-31 days) and years |
148 |
|
(360-372 days) for parameters chkPtFreq, pChkPtFreq, taveFreq, SEAICE_taveFreq, |
149 |
|
KPP_taveFreq, and freq in pkg/diagnostics are converted to exact calendar |
150 |
|
months and years. Requires pkg/cal. |
151 |
|
o diagnostics: add pickup functionality |
152 |
|
- off by default for backwards compatibility |
153 |
|
- current version only uses MDSIO -- MNC will be added |
154 |
|
o allow to use pkg diagnostics for LAND pkg output & Shapiro Tendencies. |
155 |
|
o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2) |
156 |
|
|
157 |
|
checkpoint57d_post |
158 |
|
o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing |
159 |
|
o modify verification/ideal_2D_oce so that it tests the creation of mnc |
160 |
|
output from the diagnostics package |
161 |
|
o temporary fix in EXCH2_UV: add a 3rd call to fix the 24.tiles CS-grid set-up |
162 |
|
o make genmake2 more portable by using ".$FS" instead of ".f" for more |
163 |
|
of the test compilations (eg. IBM xlf on Mac OSX w/HFS filesys) |
164 |
|
o add coordinate variables to the MNC output from the diagnostics package |
165 |
|
o change MNC-flags default value: true when useMNC=TRUE |
166 |
|
o add a "readgrid_mnc" flag to MNC and give model/src/ini_curvilinear_grid.F |
167 |
|
the ability (off by default) to read the grid information using MNC |
168 |
|
o lab_sea: use LSR_ERROR=1.E-12 for testing ; update output.txt |
169 |
|
o diagnostics: fix a bug (sub-set of levels); keep full precision when averaging |
170 |
|
o do snap-shot diagnostics at the middle of the time-interval (instead of |
171 |
|
at the end). |
172 |
|
o update exp. aim.5l_cs (use default LAND_OPTIONS.h file) and add |
173 |
|
new test for AIM with thSIce + slab-ocean |
174 |
|
o cpl_aim+ocn test: update output (optfile & default GMREDI_OPTIONS.h) |
175 |
|
o move state variable diagnostics to the beginning of the time step ; |
176 |
|
(note: still needs some work specially for snap-shot diagnostics) |
177 |
|
duplicate & replace UVELVVEL diagnostics with UV_VEL_C & UV_VEL_Z |
178 |
|
|
179 |
|
checkpoint57c_post |
180 |
|
o Change testing option (-ieee) to get closer agreement between g77 & ifort |
181 |
|
o generate new output.txt files on faulks with g77 & the new -ieee option |
182 |
|
checkpoint57c_pre |
183 |
|
|
184 |
|
o add "_d 0" in freeze ; change some "FLOAT" to "DFLOAT" and went back (TAF); |
185 |
|
update output.txt of exp. global_ocean.90x40x15 |
186 |
o fix in ini_eos.F (one "_d 0" was missing): now g77 & ifc give much closer |
o fix in ini_eos.F (one "_d 0" was missing): now g77 & ifc give much closer |
187 |
results; update global_ocean_pressure & global_ocean.cs32x15 output.txt |
results; update global_ocean_pressure & global_ocean.cs32x15 output.txt |
188 |
o add saltFlux(+File) forcing capability with periodicExternalForcing |
o add saltFlux(+File) forcing capability with periodicExternalForcing |