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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint47d_post |
7 |
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o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
8 |
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at the bottom boundary had an erroneous half slip boundary condition |
9 |
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o added bottom drag and no slip boundary condition capabilities to |
10 |
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oceanic pressure coordinates code |
11 |
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o added new verification experiment global_ocean_pressure, this experiment is |
12 |
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also described in the tutorial section of the manual |
13 |
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checkpoint47d_pre |
14 |
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|
15 |
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checkpoint47c_post |
16 |
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o Added a verification experiment for a global cubed-sphere ocean run |
17 |
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- verification/global_ocean.cubed32x32x30 |
18 |
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- uses pkg/therm_seaice and pkg/bulk_forcing |
19 |
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|
20 |
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|
21 |
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o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
22 |
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o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
23 |
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when using P-coordinate; only implemented for atmospheric config. |
24 |
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o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
25 |
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NOTES: requires option NONLIN_FRSURF to be "#define". |
26 |
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o update advect_xz/results/output.txt (left from checkpoint44g_post) |
27 |
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|
28 |
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checkpoint47b_post |
29 |
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Merging from release1_p9: |
30 |
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o pkg/seaice |
31 |
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- removed GOTO's and added taf directives |
32 |
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- double precision constants to reduce the g77 (Linux) |
33 |
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to F77 (SGI) differences reported in release1_p8 |
34 |
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o tools/genmake |
35 |
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- added SGI options |
36 |
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o verification/testscript |
37 |
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- updated to that of checkpoint47a_post |
38 |
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o verification/global_ocean.90x40x15/input/eedata |
39 |
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- modified for SGI f77 compatibility |
40 |
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o verification/lab_sea |
41 |
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- added description of sea-ice model |
42 |
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- added missing matlab routines |
43 |
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- added test of thermodynamics parallelization |
44 |
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|
45 |
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checkpoint47a_post |
46 |
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o new pkg: aim_v23 |
47 |
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= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
48 |
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for now, keep the same surface forcing as before. |
49 |
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- Part-Cell implemented into AIM; check that Heat & Water are conserved |
50 |
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- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
51 |
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- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
52 |
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o add diagnostic of surface correction term in monitor output |
53 |
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|
54 |
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o bulk_force and therm_seaice |
55 |
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- Two packages: bulk_force (Bulk forcing) |
56 |
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and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
57 |
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- Earlier integration from Stephaine Dutkiewicz |
58 |
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and Patrick Heimbach. |
59 |
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- Two ifdef statements for compile time, |
60 |
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ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
61 |
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|
62 |
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checkpoint47 |
63 |
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differentiable version of checkpoint46n_post |
64 |
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o bug fix in quasihydrostaticterms |
65 |
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o * "clean" adjoint code (in terms of extensive recomputations) |
66 |
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can now be obtained for all GMREDI options (i.e. for |
67 |
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- GM_VISBECK_VARIABLE_K |
68 |
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- GM_NON_UNITY_DIAGONAL |
69 |
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- GM_EXTRA_DIAGONAL |
70 |
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- GM_BOLUS_ADVEC ) |
71 |
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* However, wrong gradient check problem remains unsolved. |
72 |
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* New CPP options have been introduced for different |
73 |
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tapering schemes |
74 |
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o external_fields_load now part of differentiation list |
75 |
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o pressure needs multiple storing; |
76 |
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would be nice to have store_pressure at beginning or |
77 |
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end of forward_step, e.g. by having phiHyd global (5-dim.) |
78 |
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(NB: pressure is needed for certain cases in find_rho, |
79 |
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which is also invoked through convective_adjustment). |
80 |
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o recomputations in find_rho for cases |
81 |
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'JMD95'/'UNESCO' or 'MDJWF' are OK. |
82 |
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o #define ATMOSPHERIC_LOADING should be differentiable |
83 |
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o ini_forcing shifted to begining of initialise_varia |
84 |
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o Incorporating QNVS line search routines into MITgcm |
85 |
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(this is separate code, and therefore not under pkg) |
86 |
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lsopt/, optim/ |
87 |
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o Updated verification/carbon/ |
88 |
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- #define GM_VISBECK_VARIABLE_K |
89 |
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- GM_taper_scheme = 'ldd97' |
90 |
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|
91 |
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checkpoint46n_post |
92 |
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Merging from release1_p8: |
93 |
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o verification/natl_box: |
94 |
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updating new external_fields_load routine |
95 |
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o New package: pkg/seaice |
96 |
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Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
97 |
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The sea-ice code is based on Hibler (1979-1980). |
98 |
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Two sea-ice dynamic solvers, ADI and LSR, are included. |
99 |
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In addition to computing prognostic sea-ice variables and diagnosing |
100 |
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the forcing/external data fields that drive the ocean model, |
101 |
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SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
102 |
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The implied surface heat flux is then stored in variable |
103 |
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surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
104 |
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kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
105 |
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non-local transport term. Because this call precedes model |
106 |
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thermodynamics, temperature under sea-ice may not be "exactly" at |
107 |
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the freezing point by the time theta is dumped or time-averaged. |
108 |
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N.B.: fairly large differences in accuracy occur across |
109 |
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different platforms/compilers; comparison between |
110 |
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g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
111 |
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generated output gives: |
112 |
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T S U V |
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C D M c m s m s m s m s |
114 |
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n p a R g m m e . m m e . m m e . m m e . |
115 |
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f n k u 2 i a a d i a a d i a a d i a a d |
116 |
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g d e n d n x n . n x n . n x n . n x n . |
117 |
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|
118 |
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Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
119 |
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o GAD: |
120 |
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- generated new common blocks to account for call of |
121 |
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same gad routines with differing traceridentities |
122 |
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(needed to modify tracerIdentity indices in GAD.h) |
123 |
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- generated separate common blocks for case useCubedSphereExchange |
124 |
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(Department of Futurology) |
125 |
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- parameter lists to gmredi_?transport: added tracerIdentity |
126 |
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- added new key indices to tamc.h |
127 |
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o external_fields_load: |
128 |
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- added this routine to TAF list |
129 |
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- needed to make some common blocks global and additional storing |
130 |
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along the same lines as exf package (checkpoint_lev?_directives.h) |
131 |
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o exf: |
132 |
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updated external forcing package |
133 |
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- bug fixes carried over from ecco-branch |
134 |
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(missing OBCS_OPTIONS.h in two routines) |
135 |
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- enable easy to use "no forcing". |
136 |
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- added exf I/O for atmospheric loading |
137 |
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- added exf I/O for runoff data |
138 |
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- transfered scaling between exf <-> MITgcm to exf namelist |
139 |
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o Adding new verification experiment global_with_exf. |
140 |
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This verification experiment is almost identical to the |
141 |
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global_ocean.90x40x15 experiment, except that it uses |
142 |
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the exf (and cal) package instead of the |
143 |
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external_fields_load routine (cf README file). |
144 |
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|
145 |
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checkpoint46m_post |
146 |
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o modified testscript to return -- when there are no lines of "%MON" output |
147 |
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o added new flag "quasiHydrostatic" for QH mode |
148 |
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and new routine quasihydrostaticterms() |
149 |
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o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
150 |
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New routine: mom_u_coriolis_nh() |
151 |
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o fixed sign of non-hydrostatic metric terms in u and v equations. |
152 |
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Depend on correct sign of gravitySign. |
153 |
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o added work.pc* to .cvsignore in aim directories using ifc |
154 |
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o introduced flag for controllin non-hydrostatic metric terms |
155 |
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o removed gravitySign from PARM04 |
156 |
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o switched to g77/ifc from pgf77 in aim experiments |
157 |
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|
158 |
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checkpoint46l_post |
159 |
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o made convective adjustment work with pressure coordinates: |
160 |
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- changed the direction of k-loop in convective_adjustment.F for the |
161 |
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case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
162 |
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- adjusted the reference pressure k-index in convective_adjustment.F |
163 |
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- adjusted the convection condition in convect.F (in analogy to |
164 |
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calc_ivdc.F) |
165 |
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- convective_adjustment no longer computes anything on the halos |
166 |
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- removed the warnings about negative salinity from find_rho.F and |
167 |
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find_alpha.F; instead the new routine look_for_neg_salinity, called |
168 |
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at the beginning of find_rho, find_alpha, and find_beta, does a |
169 |
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check of the entire slice, if CPP-option |
170 |
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CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
171 |
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checkpoint46l_pre |
172 |
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|
173 |
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checkpoint46k_post |
174 |
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o fixed the verification/global_ocean.90x40x15 experiment: |
175 |
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- new bathymetry (the world according to A., JMC, and M.) |
176 |
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- new initial fields and forcing fields (*.bin files) |
177 |
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- new POLY3.COEFFS (for the next release one should switch to a full |
178 |
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equation of state: JMD95P or MDJWF) |
179 |
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- fixed several errors and redundancies in the data file |
180 |
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- experiment uses looped cells |
181 |
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- added matlab directory with diagnostic scripts for plotting of output |
182 |
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|
183 |
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o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
184 |
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- read AIM physics parameters from a file (data.aimphys) |
185 |
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- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
186 |
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|
187 |
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checkpoint46j_post |
188 |
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o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
189 |
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o move wVel computation at the end of the time step, in S/R integr_continuity |
190 |
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o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
191 |
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o update timeave pkg for wVel diagnostic. |
192 |
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checkpoint46j_pre |
193 |
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|
194 |
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checkpoint46i_post |
195 |
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o Clean up AIM package (and keep the results unchanged): |
196 |
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include CPP_OPTION and use IMPLICT NONE in all routines ; |
197 |
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declare all the variables _RL ; use _d 0 for all numerical constants. |
198 |
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use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
199 |
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|
200 |
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checkpoint46h_post |
201 |
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o cleaned up the use of rhoNil and rhoConst. |
202 |
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- rhoNil should only appear in the LINEAR equation of state, everywhere |
203 |
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else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
204 |
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and the dynamical equations are all divided by rhoConst |
205 |
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o introduced new parameter rhoConstFresh, a reference density of fresh |
206 |
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water, to remove the fresh water flux's dependence on rhoNil. The default |
207 |
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value is 999.8 kg/m^3 |
208 |
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o cleanup up external_forcing.F and external_forcing_surf.F |
209 |
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- can now be used by both OCEANIC and OCEANICP |
210 |
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checkpoint46h_pre |
211 |
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|
212 |
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Added code to convert surface volume flux (fresh water) into |
213 |
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a mass flux when using P coordinates in the ocean (OCEANICP). |
214 |
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Note: It assumes you have set rho0=rhoConst=density of fresh water. |
215 |
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|
216 |
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checkpoint46g_post |
217 |
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o Include a new diagnostic variable phiHydLow for the ocean model |
218 |
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- in z-coordinates, it is the bottom pressure anomaly |
219 |
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- in p-coordinates, it is the sea surface elevation |
220 |
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- in both cases, these variable have global drift, reflecting the mass |
221 |
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drift in z-coordinates and the volume drift in p-coordinates |
222 |
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- included time averaging for phiHydLow, be aware of the drift! |
223 |
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o depth-dependent computation of Bo_surf for pressure coordinates |
224 |
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in the ocean (buoyancyRelation='OCEANICP') |
225 |
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- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
226 |
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Theta, Salinity, and Pressure in the parameter list. This routine is |
227 |
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presently contained in find_rho.F. This routine does not give the |
228 |
|
correct density for 'POLY3', which would be a z-dependent reference |
229 |
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density. |
230 |
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o cleaned up find_rho |
231 |
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- removed obsolete 'eqn' from the parameter list. |
232 |
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o added two new verification experiments: gop and goz |
233 |
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(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
234 |
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checkpoint46g_pre |
235 |
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|
236 |
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checkpoint46f_post |
237 |
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o Enable tangent linear (forward mode) gradient checks: |
238 |
|
- extended active file handling to g_... files |
239 |
|
- added TANGENT_SIMULATION to theSimulationMode |
240 |
|
- extended grdchk package accordingly |
241 |
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o added tangent linear setup in verification/carbon/code_ftl |
242 |
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o added adjoint setup in verification/front_relax/code_ad |
243 |
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|
244 |
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checkpoint46e_post |
245 |
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o Added new equation of state -> MDJWF |
246 |
|
- EOS of McDougall et al., 2002, JAOT, submitted |
247 |
|
- caveat: the equation of state is only valid for a smaller (more |
248 |
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realistic?) range of values than JMD95P/Z and UNESCO |
249 |
|
- added masks to the calculation of pressure in store_pressure |
250 |
|
- added more check values for density in check_eos (ini_eos.F), some of |
251 |
|
the old check values are out of the range of the MDJWF-eos, so don't |
252 |
|
expect perfect matches for those |
253 |
|
checkpoint46e_pre |
254 |
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|
255 |
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checkpoint46d_post |
256 |
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o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
257 |
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'OCEANICP', also initialised field pressure correctly in ini_eos in the |
258 |
|
case of pressure coordinates. eosType='JMD95Z' in |
259 |
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combination with buoyancyRelation='OCEANICP' now causes an error. |
260 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
261 |
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in find_alpha/beta. |
262 |
|
checkpoint46d_pre |
263 |
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|
264 |
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o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
265 |
|
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
266 |
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|
267 |
|
checkpoint46c_post |
268 |
|
o Changes necessary for ocean in p-coordinates |
269 |
|
- Added new buoyancy relation = 'OCEANICP' |
270 |
|
- Added new parameters = gravitySign (this used to be contained inside |
271 |
|
the factor dRdZ which I added when we first switched to R coordinates). |
272 |
|
X GM/Redi is not compatible (yet) |
273 |
|
X bottom drag and no-slip need to be debugged. |
274 |
|
checkpoint46c_pre |
275 |
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|
276 |
|
checkpoint46b_post |
277 |
|
o Added new equation of state -> JMD95Z and JMD95P |
278 |
|
- EOS of Jackett and McDougall, 1995, JAOT |
279 |
|
- moved all EOS parameters into EOS.h |
280 |
|
- new routines ini_eos.F, store_pressure.F |
281 |
|
o Added UNESCO EOS, but not recommended because it requires |
282 |
|
in-situ temperature (see JMD95) |
283 |
|
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
284 |
|
unesco.f to be used with POLY3 |
285 |
|
checkpoint46b_pre |
286 |
|
|
287 |
|
checkpoint46a_post |
288 |
|
o Added (atmospheric) pressure loading |
289 |
|
- new field in FFIELDS.h, etc... |
290 |
|
- new cpp flag ATMOSPHERIC_LOADING |
291 |
|
o Changed hFacC to _hFacC in calc_phi_hyd.F |
292 |
|
o Added SHORTWAVE_HEATING to some files for consistency |
293 |
|
checkpoint46a_pre |
294 |
|
|
295 |
|
checkpoint46 |
296 |
|
further merges from release1_p5 |
297 |
|
o new ctrl package |
298 |
|
- adopted from ECCO environment to enable optimization |
299 |
|
- added Eliassen Palm fluxes to controls |
300 |
|
o added Eliassen Palm flux controls to gradient check package |
301 |
|
o cost package |
302 |
|
- Compatible with new ctrl package |
303 |
|
- added Eliassen Palm cost hooks |
304 |
|
- modif's of existing cost functions |
305 |
|
o Adjoint-related bug fixes in kpp: |
306 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
307 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
308 |
|
o autodiff package |
309 |
|
- flow directives: |
310 |
|
+ new for S/R do_the_model_io |
311 |
|
+ enhanced for S/R checkpoint |
312 |
|
+ new gmredi.flow |
313 |
|
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
314 |
|
disable adcommon.h/g_common.h by default. |
315 |
|
- fixed problem for adjoint of global_max |
316 |
|
o modified verification/carbon/ |
317 |
|
o New setup for adjoint of global_ocean |
318 |
|
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
319 |
|
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
320 |
|
o incorporated hooks for sponge layer code (external_forcing.F) |
321 |
|
|
322 |
|
checkpoint45d_post |
323 |
|
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
324 |
|
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
325 |
|
(affects plume_on_slope "cg2d" output) |
326 |
|
o add new parameter deltaTfreesurf for free-surface time stepping |
327 |
|
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
328 |
|
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
329 |
|
o change phiMin in exp1 (to agree with documentation) |
330 |
|
o add new flags: |
331 |
|
- T,S forcing inside/outside Adams-Bashforth |
332 |
|
- turn off temp,salt advection and/or forcing |
333 |
|
- for each tracer, define internal flag for multiDimAdvection & A-B |
334 |
|
o monitor: change definition of KE to check conservation of Energy |
335 |
|
|
336 |
|
checkpoint45c_post |
337 |
|
o Removed f90 comments ("!") |
338 |
|
o Modified initialisations to enable exf package for MITgcm |
339 |
|
(without invoking ECCO_PACKAGE). |
340 |
|
o modifications to gradient check package (Martin Losch) |
341 |
|
- enable centered differences |
342 |
|
- modified format of standard output |
343 |
|
|
344 |
|
checkpoint45b_post |
345 |
|
o cleaned exchange calls in cg2d |
346 |
|
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
347 |
|
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
348 |
|
to configure barotropic setup (Martin Losch) |
349 |
|
o moved some initialisations within bi,bj loop in dynamics |
350 |
|
(TAF flow dependency) |
351 |
|
o in initialise_varia, moved call packages_init_variables |
352 |
|
before convective_adjustment_init |
353 |
|
(corresponding adjustment of TAF tape initialisation). |
354 |
|
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
355 |
|
|
356 |
|
checkpoint45a_post |
357 |
|
o compute Rho over the whole domain (extend iMin,jMin indices) |
358 |
|
o specific exchange for X-slice domain (case Ny=1) |
359 |
|
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
360 |
|
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
361 |
|
|
362 |
|
checkpoint44h_post = checkpoint45 |
363 |
|
o Fix to restore differentiability: |
364 |
|
place at which packages_init_variables is called in |
365 |
|
initialise_varia is crucial for reverse control flow. |
366 |
|
o modifications in GMRedi to enable stable adjoint |
367 |
|
(corresponding modif's in thermodynamics, dynamics) |
368 |
|
o added missing hook for sponge layer code in external_forcing |
369 |
|
o modified test cost functions |
370 |
|
o storing in gad_advection (plus removal of write(0,*)! |
371 |
|
o missing headers TR1.h added in convective_adjustment routines |
372 |
|
o errorMessageUnit set non-equal zero in eeboot |
373 |
|
(conflict on some platforms, e.g. IBM SP3) |
374 |
|
o modified carbon verif. |
375 |
|
|
376 |
|
checkpoint44h_pre |
377 |
|
o vertical grid option: allow to put the Interface at the middle between |
378 |
|
2 cell-centers ; replace delZ in pkg/kpp by drF. |
379 |
|
o GM Advective form: Tracers are advected using the residual transport (= |
380 |
|
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
381 |
|
|
382 |
|
checkpoint44g_post |
383 |
|
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
384 |
|
results) ; ifdef missing in thermodynamics.F |
385 |
|
|
386 |
|
checkpoint44f_pre,checkpoint44f_post |
387 |
|
o added PTRACERS package |
388 |
|
This allows an arbitrary number of passive tracers to be integrated |
389 |
|
forward simultaneously with the dynamicaly model. |
390 |
|
+ Implemented so far: |
391 |
|
- basic forward algorithm (time-stepping, advection, diffusion, convection) |
392 |
|
- I/O and checkpointing |
393 |
|
- GM/Redi *but* using the GM/Redi coefficient of Salt |
394 |
|
+ Not implemented so far: |
395 |
|
- KPP |
396 |
|
- OBCS |
397 |
|
+ No specific example supplied (yet) but global_ocean.90x40x15 has the |
398 |
|
necessary data.ptracer file. Simply use -enable=ptracers and uncomment |
399 |
|
line in data.pkg. |
400 |
|
+ This package is disabled by default since it increases storage. |
401 |
|
|
402 |
|
|
403 |
|
o testscript: added -cleanup option |
404 |
|
o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter |
405 |
|
b) enable to filter 2D fields. |
406 |
|
|
407 |
|
checkpoint44e_pre,post |
408 |
|
o re-wrote convective adjustment to use pre-calculated weights |
409 |
|
Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F |
410 |
|
Adds: model/src/convective_weights.F, convectively_mixtracer.F |
411 |
|
Original calls to convect() still in place. |
412 |
|
|
413 |
|
chkpt44d_pre,post |
414 |
|
o added missing EXCLUDE_MONITOR flags |
415 |
|
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
416 |
|
(incompatible typ in MIN/MAX expressions caused problems |
417 |
|
on IBM SP3) |
418 |
|
o in genmake added variable MAKEDEPEND |
419 |
|
plus resetting for case SunOS |
420 |
|
o added timer_stats.c routine for IBM SP3 |
421 |
|
o removed variables in dynamics |
422 |
|
!!! I forgot to create tag chkpt44d_pre !!! |
423 |
|
!!! But chkpt44d_pre = chkpt44c_post !!! |
424 |
|
|
425 |
|
o real fresh water flux implemented with non-linear free-surface. |
426 |
|
|
427 |
|
chkpt44c_pre,post |
428 |
|
o few fix (mask in shap_s2, EmPmR in external_field_load, |
429 |
|
USE_NATURAL_BCS in solve_for_P); |
430 |
|
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
431 |
|
|
432 |
|
checkpoint44b_pre/_post |
433 |
|
o merge of relevant stuff from the ecco-branch: |
434 |
|
- genmake: removed $S64 overwrite for case SunOS |
435 |
|
- pkg/exf: update and corrections for field swapping and obcs |
436 |
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
437 |
|
harmonized between ECCO and MITgcm |
438 |
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
439 |
|
updated checkpointing_lev... lists for obcs |
440 |
|
- model/src: minor changes in forward_step, plot_field |
441 |
|
added directive for divided adjoint in the_main_loop |
442 |
|
- pkg/mdsio: added mdsio_gl_slice |
443 |
|
|
444 |
|
o check parameters & config (chkpt44a_pre,post) |
445 |
|
o OBC and NonLin_FrSurf. |
446 |
|
|
447 |
|
checkpoint44 |
448 |
|
o fix bug in mom_vi_del2uv |
449 |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
450 |
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
451 |
|
o update AIM experiments (NCEP input files) |
452 |
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
453 |
|
o added some stuff for AD |
454 |
|
|
455 |
|
checkpoint43 |
456 |
|
o added two new advection tests |
457 |
|
o added global 4x4 degree ocean test |
458 |
|
o added test of H&S94 with free surface on cube |
459 |
|
o some final mods for gradient check, adjoint,... |
460 |
|
|
461 |
|
checkpoint42 |
462 |
|
Fixed AD-related problems: |
463 |
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
464 |
|
(mainly thermodynamics.F) |
465 |
|
o New store directives for multi-dim. advection schemes |
466 |
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
467 |
|
* new common block and key passkey |
468 |
|
(mainly gad_advection.F) |
469 |
|
o Modified store directives for split of dynamics/thermodynamics |
470 |
|
for the case ALLOW_KPP |
471 |
|
o Cleaned argument list for timestep_tracer.F |
472 |
|
|
473 |
|
checkpoint41 |
474 |
|
o re-formatted/added comments in prologues of key subroutines |
475 |
|
to work with protex |
476 |
|
|
477 |
|
checkpoint40 |
478 |
|
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
479 |
|
o added FLT (floats) package from Arne along with demo. experiment |
480 |
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
481 |
|
implementation of forward-in-time forcing terms |
482 |
|
o more mods for non-linear free-surface including new variable |
483 |
|
o modified multi-dim method to work on cube |
484 |
|
o bug fix in KPP (from DM) |
485 |
|
|
486 |
|
checkpoint40pre9 |
487 |
|
o added DST advection schemes |
488 |
|
o fix MPI bug on SGI's |
489 |
|
o modifications for non-linear free-surface |
490 |
|
o fixed conditionals for fixed flow/passive tracer only mode |
491 |
|
o added tension/strain form of stress tensor |
492 |
|
o changes to commenting of arguments for TAF/TAMC |
493 |
|
o added/updated many matlab scripts |
494 |
|
o added multi-dimensional advection method for tracers |
495 |
|
|
496 |
|
checkpoint40pre8 |
497 |
|
o new package rw/ |
498 |
|
Added method for dumping intermediate local arrays: |
499 |
|
mdsio_writetile - same as mdsio_writefield except works from inside |
500 |
|
bi,bj loop |
501 |
|
mdsio_writelocal - same as mdsio_writetile except works for local |
502 |
|
arrays |
503 |
|
write_local_r? - higher-level wrapper for mdsio_writelocal |
504 |
|
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
505 |
|
Example given at end of mom_vecinv.F that dumps some local arrays. |
506 |
|
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
507 |
|
control flux-form versus vector invariant code. |
508 |
|
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
509 |
|
or genmake -DISABLE ... |
510 |
|
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
511 |
|
(additional storing is now needed for case vecinv; |
512 |
|
currently nothing implemented to switch this storing off |
513 |
|
in case fluxform is used since no CPP flag available). |
514 |
|
|
515 |
|
checkpoint40pre7 |
516 |
|
o bug fix in dynamics.F |
517 |
|
calc_viscosity called before k=1,Nr loop. |
518 |
|
o added some #ifdef's ALLOW_PASSIVE_TRACER |
519 |
|
o cleaned initialisations in ctrl_map_ini |
520 |
|
related to TAF |
521 |
|
|
522 |
|
checkpoint40pre6 |
523 |
|
o split dynamics into thermodynamics & dynamics |
524 |
|
o corresponding split of calc_diffusivity into |
525 |
|
calc_diffusivity, calc_viscosity |
526 |
|
(kpp_calc_diff, kpp_calc_visc). |
527 |
|
o Added diffkr, kapgm to control variables |
528 |
|
o bug fix in gmredi_slope_limit for ldd97 |
529 |
|
|
530 |
|
checkpoint40pre5 |
531 |
|
o proper initialization of Adams-Bashforth time stepping |
532 |
|
+ uses forward step for very first step of model (iter=0) |
533 |
|
o re-generated *all* output since almost all output is modified by this |
534 |
|
change (sorry but we've been putting this one off for about 2 years) |
535 |
|
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
536 |
|
*not* regenerated since they are already out of date and I don't |
537 |
|
want to create the impression that they are suddenly working. |
538 |
|
o removed KAP stuff for DEC's |
539 |
|
o modified/added many .cvsignore files in */code and */input |
540 |
|
o added new expt "solid-body.cs-32x32x1" |
541 |
|
+ this uses an alternative form of ini_curvilinear_grid.F which |
542 |
|
is not necessarily any better than the current one... |
543 |
|
|
544 |
|
checkpoint40pre4 |
545 |
|
o added re-initialisations of utrans,vtrans,rtrans in |
546 |
|
calc_common_factors which are crucial for TAF. |
547 |
|
o extended iMin,jMin range for calc_common_factors, |
548 |
|
calc_diffusivity |
549 |
|
o added option ALLOW_PASSIVE_TRACER |
550 |
|
o a few minor updates and fixes |
551 |
|
|
552 |
|
checkpoint40pre3 |
553 |
|
o created calc_gtr1.F for gad package |
554 |
|
o split the_main_loop and re-introduced forward_step |
555 |
|
o some recomputations of nIter0 for TAMC |
556 |
|
|
557 |
|
checkpoint40pre2 |
558 |
|
o Updated to latest branch of AJA, JMC |
559 |
|
o Added gradient check package |
560 |
|
o Added routines for passive tracer handling |
561 |
|
o Added carbon sequestration sensitivity experiment |
562 |
|
|
563 |
|
checkpoint39 |
564 |
|
o Modifications and fixes to support TAMC |
565 |
|
(mainly missing or wrong directives) |
566 |
|
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
567 |
|
in addummy_in_stepping |
568 |
|
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
569 |
|
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
570 |
|
o Included following packages: |
571 |
|
cal: calendar |
572 |
|
exf: external forcing |
573 |
|
ecco: essential routines to control use of cal, exf |
574 |
|
(NB: this is not the full ECCO environment) |
575 |
|
o disabled some packages by default in genmake |
576 |
|
|
577 |
checkpoint38 |
checkpoint38 |
578 |
o see notes_c37_adj.txt |
o see notes_c37_adj.txt |
579 |
o corrected wrong layer index in external_forcing_t |
o corrected wrong layer index in external_forcing_t |