--- MITgcm/doc/tag-index	2008/11/26 15:27:02	1.1045
+++ MITgcm/doc/tag-index	2009/01/30 14:31:18	1.1057
@@ -1,9 +1,51 @@
-$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.1045 2008/11/26 15:27:02 mlosch Exp $
+$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.1057 2009/01/30 14:31:18 dfer Exp $
 $Name:  $
 
     Notes on tags used in MITgcmUV
     ==============================
 
+o pkg/ggl90: a few modifications:
+ - fix bottom boundary condition, and interpolation of KappaE
+   near top and bottom
+ - use same set of viscosity/diffusivity for TKE/momnetum/tracer 
+ - add smoothing option as in Blanke and Delecluse (1993) (--> ALLOW_GGL90_SMOOTH)
+ - add a few options for mixing-length upper limit (--> mxlMaxFlag)  
+o rename thetaMin,phiMin -> xgOrigin,ygOrigin
+  (maintain temporary backward compatibility, until next checkpoint)
+
+checkpoint61h
+o pkg/diagnostics with "periodic averaging diagnostics":
+  fix S/R DIAGNOSTICS_COUNT ; hack diagnostics_out.F to get NetCDF output. 
+o pkg/my82: add missing "_d 0" ; update output of exp. vermix.my82
+o pkg/obcs: fix loop ranges for balancing code
+o pkg/flt:
+ - improve criteria for finding which tile owns a float.
+ - fix FLT_EXCH for case without MPI ; apply cyclic BC + fix also the MPI case.
+o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg
+  aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling
+  with ocean biogeo)
+o pkg/flt:
+ - do some cleaning and fix the restart ;
+ - add output.txt in flt_example/results to get this pkg tested.
+o genmake2: add an EXTENDED_SRC option and flag.
+   for now, cannot be turned on on command line (only through genmake_local)
+o pkg/mdsio: read/write vector:
+ - singleCpuIO: fix RL/RS in MDSWRITEVECTOR by calling new S/R MDS_BUFFERtoRL/RS
+ - singleCpuIO=F: fix arrType & filePrec & _BYTESWAPIO in both MDSREADVECTOR
+   & MDSWRITEVECTOR by calling new S/R MDS_RD/WR_VEC_RL/RS.
+ - affects gradient of test-exp "bottom_ctrl_5x5" (not due to _BYTESWAPIO)
+  (drop to 4 digits matching for grad). But this test does not look very
+  reliable (was already failling on eddy, fc5, at 6.digits). Update output.
+
+checkpoint61g
+o pkg/flt:
+  - move FLT_CPPOPTIONS.h to FLT_OPTIONS.h (standard name)
+   + make OPTIONS file more standard.
+  - rename S/R MDSREADVECTOR_FLT to FLT_MDSREADVECTOR (to mach src file name)
+  - fix _BYTESWAPIO CPP-Flag
+  - standard reading of file-parameter "data.flt"
+  - fix argument list of S/R FLT_RESTART
+  still need to fix _BYTESWAPIO in pkg/mdsio/mdsio_writevector.F
 o pkg/obcs: fix a CPP-flag, bug reported by Jeff Blundell
 o gather_2d.F/scatter_2d.F: suppress vectorisation on NEC SX in respond to
   a still unfixed compiler/optimization bug