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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o change calculation of Visbeck K: |
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- no longer depend on tapering scheme; instead, compute slope (limited |
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by GM_maxSlope). this is equivalent to what was comuted before with |
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clipping or linear tappering. |
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- fix vertical averaging (wrong by 1 level) |
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- leave the old version (but will not be maintained) within |
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#ifdef OLD_VISBECK_CALC / #endif |
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o change error catch in calc_r_star to improve vectorization |
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o exf runoff and seaice: remove ALLOW_SEAICE from exf pkg files and |
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add #define ALLOW_RUNOFF in SEAICE_OPTIONS.h (when not using exf). |
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checkpoint59b |
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o coupler (pkg/atm_ocn_coupler, pkg/ocn_compon_interf, pkg/atm2d): |
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- export/import (between ocean & coupler) fields needed for ocean DIC. |
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o pkg/seaice: |
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- get rid of three more exchanges seaice_calc_viscosities (required |
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different loop boundaries in seaice_lsr and seaice_ocean_stress) |
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- bug fix in seaice_ocean_stress (update of lab_sea required) |
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- reduce loop boundaries to necessary minimum also in seaice_evp |
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- go back to the old way of computing deltaC/Z as the adjoint likes that |
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better |
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o Refresh of tutorial_global_oce_latlon (includes changing salinity-like |
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passive tracer to an Age Tracer) + update output.txt |
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o pkg/exf: |
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- implement A-grid / C-grid selection for wind-stress input files. |
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- clean-up exf_wind.F (remove us, use wspeed instead ; add wStress) |
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for now, in exf_bulk_largeyeager04.F only : |
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- change implementation for case where windspeed + 2. components wind-stress |
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are read-in. AND use rhoConstFresh to convert evap. |
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o pkg/seaice: |
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- use correct EXCH_UV for wind-forcing (on A-grid). |
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- change SEAICE_OPTIONS.h to limit the number of option combinations (regarding |
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SEAICE_EXTERNAL_FORCING & SEAICE_EXTERNAL_FLUXES); add corresponding stops. |
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o pkg/exf: |
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- default EXF options are now set in EXF_OPTIONS.h (ifndef ALLOW_AUTODIFF_TAMC) |
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EXF_INTERPOLATION: |
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- merge global_with_exf/code version of exf_interp_read.F |
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to the main code ; |
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- Add new option: EXF_INTERP_USE_DYNALLOC to use Dynamical Allocation when |
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reading the file ; Important: This options needs to be defined to recover |
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previous code. |
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otherwise, use fixed size array to read in (size=exf_interp_bufferSize). |
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- no longer loose real*8 precision along the way when using exf_iprec=64. |
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o pkg/seaice: rearrangement of common blocks (really needs more cleaning up) |
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- change discretisation of evp-solver in order to avoid another exchange |
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(changes lab_sea) and clean up a little |
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- replace SQRT(MAX(deltaC,SEAICE_EPS)) by MAX(SQRT(deltaC),SEAICE_EPS) |
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help the adjoint (this also changes the results slightly) |
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- add a few "_d 0" where they had been missing in seaice_evp.F |
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- cleaning up: remove unused seaice_calc_rhs.F |
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o pkg/exf: some cleaning-up: |
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- change various "constants" into runtime parameters |
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- cleaned-up Large&Yeager04 routine which should eventually |
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replace exf_bulkformulae.F (changed names of S/R and CPP) |
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and merged various ALLOW_ATM_WIND options |
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only used with thsice pkg (in thsice_get_exf.F): |
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- implement fixed turbulent transfert Coeff over ice (as in Large&Yeager04) |
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which are used when useStabilityFct_overIce=TRUE (= the default) |
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- change default values of ice & snow emissivity and scale downward LW |
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by ice & snow emissivity. |
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o pkg/thsice: |
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fix few little problems, in thsice_calc_thickn.F: |
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- growth vertically (and not laterally) if iceFrac == iceMaskMax |
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- melt laterally only if hIce < hThinIce (as the comments say) |
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and in thsice_extend.F: |
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- allow to form ice even when iceFrac == iceMaskMax (by increasing thickness) |
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- start to form ice as soon as the minimum ice-volume is reachable. |
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update output of test-exp: aim.5l_cs(thSI), global_ocean.cs32x15(thsice), |
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and cpl_aim+ocn |
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o pkg/kpp |
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- move computation of surface related input fields to KPP into a new |
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subroutine kpp_forcing_surf.F |
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- remove wrong (within bi,bj loops) EXCH calls. |
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- little cleaning (add argument myThid in last position, cvs header ...) |
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- for now, fix conservation problem by exchanging KPPviscAz (may not |
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be the best fix) |
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o pkg/seaice |
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- check for inconsistent evp parameter/cpp-flag combination |
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- remove leftover errIO flat for obsolete name list error handling |
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o OpenAD |
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- changed verification/OpenAD to full baroclinic setup (including GM/Redi) |
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checkpoint59a |
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o pkg/seaice: some parameter clarifications and a little bit of clean up |
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o pkg/thsice: rename run-time parameters: |
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himin -> hIceMin |
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himin0 -> hThinIce |
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hihig -> hThickIce |
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i0 -> i0swFrac |
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transCoef -> bMeltCoef |
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frac_energy -> fracMelting |
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add new parameters: hNewIceMax, fracFreezing, dhSnowLin |
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with default values (for now) that do not change the results. |
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remove old version of thsice vars advection in pkg/seaice. |
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o in FFIELDS.h: |
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- replace #ifndef ALLOW_EXF by #ifndef EXCLUDE_FFIELDS_LOAD |
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- make pLoad & sIceLoad always available (but still only used if |
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ATMOSPHERIC_LOADING is #define). |
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o pkg/kpp: replaced _KPP_RL with _RL |
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o bug fixes for vertical diffusivity computations when both KPP and |
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3D diffusivity arrays are used. |
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o pkg/seaice: fix bug in evp solver, while doing that |
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- change (improve?) discretization of stress computations for both |
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cgrid-lsr and evp solver |
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- add a new routine to compute strain rates |
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- the above changes lab_sea results |
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- add no slip conditions for evp solver (off by default), lsr-version |
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may follow |
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- fix exchange for shear at Z-points (does not change lab_sea) |
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- retire SEAICEuseEVP, instead turn on EVP by setting SEAICE_deltaTevp |
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(to force the user to pick a time step since there is not "safe" way |
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of choosing it) |
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- add principal stress diagnostics |
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- rearrange fields for evp a little to avoid having to call a: too many |
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exchanges and b: exchanges for stress trensor components which we do |
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not have. |
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- modify Hibler+Bryan (1987) stress coupling so that it reuses information |
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of evp, complete rewrite for lsr case (latter is does not yet work |
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in all cases) |
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o pkg/kpp: add code to have mixing in shelf ice caverns |
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- add myThid to all kpp routines (long overdue) |
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checkpoint59 |
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o pkg/exf: |
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- fix wind-stress location: defined on A-grid (if ALLOW_ATM_WIND & |
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ALLOW_BULKFORMULAE or USE_EXF_INTERPOLATION), otherwise, defined on C-grid |
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- move exf header files from lower_case.h to UPPER_CASE.h ; |
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add missing cvs Header & Name |
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- add adjoint routines and flow dirs for newly used exch_uv_agrid routines |
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- add namelist param. selectStressGridPosition, exf_monFreq |
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- retire many _CLIM routines, and remove data.exf_clim |
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+ params moved to data.exf |
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+ climsst, climsss now handled by exf_set_gen, i.e. |
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climss?period=0 refers to constant field, |
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climss?period=-12 to monthly forcing |
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- split up namelists in data.exf |
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o pkg/seaice: |
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- remove seaice_exch and seaice_exch_uv |
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- remove superfluous exchange of theta |
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- add myThid to seaice_budget_ocean/ice |
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- add new interface for atmospheric wind forcing (C-grid only) |
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+ new routine |
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+ two new field (taux, tauy for stress over ice) |
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+ removed one global field (DAIRN) for C-grid case only |
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o pkg/thsise |
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- 2nd set of modifs for thsice adjoint in conjunction with exf |
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o enable runtime flag useEXF (useCAL is set to .T. if useEXF=.T.) |
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checkpoint58y_post |
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o Added capability for latitudinal dependence of Bryan and Lewis, 1979 |
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vertical diffusivity, similar to that in MOM4; turned on using |
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#define ALLOW_BL79_LAT_VARY in CPP_OPTIONS.h and specified using |
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diffKrBL79*, diffKrBLEQ*, and BL79LatVary in runtime data file. |
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o Added capability for 3D specification of background vertical diffusion |
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coefficient. This is done by (i) #define ALLOW_3D_DIFFKR |
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in CPP_OPTIONS.h and (ii) specifying file diffKrFile in runtime |
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"data" file that contains the 3D vertical diffusivity coefficients. |
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o ice dynamics (pkg/seaice) with thsice thermodynamics: |
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- add code within pkg thsice to advect & diffuse sea-ice fields |
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similar to (and will replace) what has been added in seaice_advdiff.F, |
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but: - conserving Mass, Heat & Salt. |
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- better when using non-linear advection scheme (not yet fully tested) |
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- can also be used in atmospheric set-up (for now, only the diffusion). |
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checkpoint58x_post |
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o IO option for global-file compact format: |
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- add options when generating topology (utils/exch2/matlab-topology-generator) |
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- add I/O capability (pkg/mdsio). |
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- adapt utils/matlab/rdmds.m to read this format. |
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for now long-line format not yet supported by pkg/mdsio (& exch2). |
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o shelfice: add a few diagnostics |
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checkpoint58w_post |
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o p-coord. non-hydrostatic using reference profile for w <-> omega conversion: |
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rVel2wUnit & wUnit2rVel are computed from reference profile Tref,Sref |
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(and replace horiVertRatio in NH code). |
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Update output of exp.: tutorial_global_oce_in_p (useNHMTerms !) |
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and tutorial_plume_on_slope (sensitive to truncation) |
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o seaice: if ALLOW_ATM_WIND is undefined use wind stress |
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directly to drive seaice model (C-grid only) |
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o exf: when input wind-stress (#undef ALLOW_ATM_WIND): |
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- reintroduce computation of wind from stress, |
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- compute tau (in exf_bulkformulae.F) from windstress averaged to |
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mass points to avoid tau = 0 |
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- fix serious bug: (1/3) in Fortran is not the same as (1./3.) |
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o rdmnc.m: make it work with "global" files created with gluemnc |
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o rdmnc.m : some improvements in dealing with singleton dimension |
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(tested on all testreport mnc output files). |
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o genmake2: disable pkg/profiles if netcdf test fails. |
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o cpl_aim+ocn exp.: use consistent rhoConstFresh in Atm & Ocn; update output. |
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o move call to cal_readparms up to make calendar parameters/variable available |
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to all packages |
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checkpoint58v_post |
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o change EOS (from POLY3 to JMD95P) in global_ocean.90x45x15 to get |
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useDynP_inEos_Zc tested. |
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o pkg/exf: changes to properly interpolate/mask/scale initial fields |
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o utils/matlab/cs_grid/read_cs: routines to speed up reading of CS510 fields |
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and portions thereof. See read_cs.txt for description and examples. |
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o utils/matlab/cs_grid/bk_line: to compute transport through passages, |
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add a script (grt_circ_bkl.m) to generate broken-line between 2 points, |
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following the great-circle arc between those 2 points. |
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o trap un-initialized variable with pathscale compiler on weddell.mit.edu |
| 210 |
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(thanks to Constantinos): fix few problems and get (almost) all exp to pass. |
| 211 |
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o 2nd-Order Moment Advection Scheme (Prather, 1986): first check-in |
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- enable by setting #define GAD_ALLOW_SOM_ADVECT (in GAD_OPTIONS.h) |
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- used without limiter (AdvScheme=80) or with Prather limiter (AdvScheme=81) |
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- still needs work (not working with some options ; efficiency to improve) |
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and serious testing. |
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- use this scheme for temperature & salinity in 2 advection test exp.: |
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advect_xy & advect_xz, respectively. |
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checkpoint58u_post |
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o new test-exp: fizhi-cs-32x32x40 (40 levels) to replace the 10 levels. |
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o move call to INI_FORCING from PACKAGES_INIT_VARIABLES to INITIALISE_VARIA. |
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o testreport: add option "-skipdir" to skip some test. |
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o exf: when input wind-stress (#undef ALLOW_ATM_WIND), by-pass turbulent |
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momentum calculation. |
| 225 |
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o gad_advection: fix vertAdvecScheme (if different from advectionScheme) |
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o some cleaning: usePickupBeforeC35 no longer supported ; remove this option. |
| 227 |
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remove checkpoint.F and the_correction_step.F (no longer used); |
| 228 |
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do the k loop inside CYCLE_TRACER (supposed to be more efficient). |
| 229 |
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o add option (linFSConserveTr) to correct for tracer source/sink due to |
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Linear Free surface |
| 231 |
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o pkg/seaice: fix a bug in the flooding algorithm: turn off the snow machine |
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o pkg/thsice: fix reading mnc-pickups |
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checkpoint58t_post |
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o pkg/diagnostics: fix multi-threaded output (when singleCpuIO=F) |
| 236 |
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o pkg/mdsio: |
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- clean-up mdsio_readfield.F & mdsio_writefield_new.F and |
| 238 |
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move to new files: mdsio_read_field.F (S/R MDS_READ_FIELD) & |
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mdsio_write_field.F (S/R MDS_WRITE_FIELD); |
| 240 |
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- fix multi-threaded singleCpuIO option in MDS_WRITE_FIELD |
| 241 |
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- collect old S/R in one file: mdsio_rw_field.F (now just a call to |
| 242 |
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either MDS_READ_FIELD or MDS_WRITE_FIELD ) |
| 243 |
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- new S/R (to replace MDSWRITEMETA), which allows to write more |
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informations (variable names, time ...) to meta files. |
| 245 |
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- modify rdmds.m to give back the meta file content. |
| 246 |
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o pkg/diagnostics: change vertical interpolation to be safer, and more |
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flexible (define p-levels to interpolate to in data.diagnostics); |
| 248 |
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add argument to S/R DIAGNOSTICS_GET_POINTERS to catch the right |
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diagnostic pointer. |
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o pkg/seaice: more cleaning up of seaice_growth, added many comments |
o pkg/seaice: more cleaning up of seaice_growth, added many comments |
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o pkg/exf: put runoff0 and runoff into the appropriate common block |
o pkg/exf: put runoff0 and runoff1 into the appropriate common block |
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o fix multi-category seaice: |
o fix multi-category seaice: |
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- change cpp flag SEAICE_MULTILEVEL to more meaningful name: |
- change cpp flag SEAICE_MULTILEVEL to more meaningful name: |
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SEAICE_MULTICATEGORY |
SEAICE_MULTICATEGORY |
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