3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
checkpoint55a_post |
7 |
|
o merged code to |
8 |
|
* prescribe/read time-dependent open boundaries |
9 |
|
(works in conjunction with exf, cal) |
10 |
|
* sponge layer code for open boundaries |
11 |
|
* each boundary N/S/E/W now has its own CPP option |
12 |
|
(healthy for the adjoint) |
13 |
|
|
14 |
|
checkpoint55 |
15 |
|
o up-to-date adjoint of previous breaks |
16 |
|
- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
17 |
|
- global_ocean_ebm: adjoint still needs fix (TLM ok) |
18 |
|
- global_ocean.90x40x15: extended GMREDI_OPTIONS.h |
19 |
|
- carbon: * remove tr1-related adjoint verification |
20 |
|
* add ptracer as control variable |
21 |
|
o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
22 |
|
(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
23 |
|
|
24 |
|
checkpoint54f_post |
25 |
|
o in verification/carbin/ remove experiment related to |
26 |
|
ALLOW_PASSIVE_TRACER (array tr1 etc) |
27 |
|
code_ad/ input_ad/ results_ad |
28 |
|
|
29 |
|
o add two new packages |
30 |
|
- ggl90, TKE-model of Gaspar et al. (1990), Blanke+Delecluse (1993) |
31 |
|
+ subject to optimization (memory) |
32 |
|
- opps, OPPS (ocean penetrative plume scheme) of Paluszkiewicz+Romea (1997) |
33 |
|
+ subject to reordering (many GOTOs in the original code) |
34 |
|
+ so far opps is called for every (i,j) point, and then operates in |
35 |
|
the vertical; one may want to reorder the scheme in order operate in |
36 |
|
horizontal slabs at the cost of (a lot of) memory, at least ten new 3D |
37 |
|
fields) |
38 |
|
o overhaul of IO so that we now have flags for MDSIO and/or MNC |
39 |
|
- all verification tests compile and run with linux_ia32_g77 |
40 |
|
- defaults are compatible with current input files--nothing |
41 |
|
should change if you were not previously using MNC |
42 |
|
- MNC output has been added in numerous places (eg. timeave) |
43 |
|
but there are still a few writes not yet do-able with MNC |
44 |
|
(this is in progress) |
45 |
|
- flags now allow for either/or/both use of MDSIO and MNC and |
46 |
|
documentation will soon follow |
47 |
|
- numerous small formatting cleanups for ProTeX |
48 |
|
o add version info (via BUILD_INFO.h) to MNC and stdout |
49 |
|
|
50 |
|
checkpoint54e_post |
51 |
|
o add two new packages |
52 |
|
- pp81 (Packanowski and Philander, 1981), Richardson number and |
53 |
|
stratification dependent mixing |
54 |
|
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
55 |
|
- these scheme operate in a similar manner as KPP (without ghat, of |
56 |
|
course), however there is only one diffusivity that is used for both |
57 |
|
temperature and salinity (and passive tracers)ç |
58 |
|
o add offline package |
59 |
|
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
60 |
|
provided by Stephanie Dutkiewicz |
61 |
|
o genmake2: add ability to search for C compilers and cleanup test output |
62 |
|
- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
63 |
|
|
64 |
|
checkpoint54d_post |
65 |
|
o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
66 |
|
o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
67 |
|
leading to additional shift by 5 days each year of integration |
68 |
|
(i.e. leading to considerable offset over the years) |
69 |
|
o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep |
70 |
|
o start with no AB and no initial filtering (staggerTimeStep): |
71 |
|
change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5 |
72 |
|
o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F |
73 |
|
(external loading & cpl import/export stay in forward_step.F) |
74 |
|
o update coupling interface to work with new staggerTimeStep |
75 |
|
o change MDSIO ptracers_pickup. |
76 |
|
o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F); |
77 |
|
o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
78 |
|
o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
79 |
|
|
80 |
|
checkpoint54c_post |
81 |
|
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
82 |
|
this affects (truncation error) output.txt of test-exp: |
83 |
|
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
84 |
|
o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array) |
85 |
|
o change Qnet to always be the net heat flux, (+upward). |
86 |
|
affects (truncation error) output of natl_box exp.: updated |
87 |
|
o define the max number of passive tracers in PTRACERS_SIZE.h |
88 |
|
o start to test mnc routinely in exp0 |
89 |
|
o add sea-ice loading (sIceLoad) as a new forcing field. |
90 |
|
|
91 |
|
checkpoint54b_post |
92 |
|
o add testreport "-j JOBS" option for parallel builds (tested and pretty |
93 |
|
impressive on Altix and Opteron systems) |
94 |
|
o diagnostics can now write NetCDF files through the mnc package |
95 |
|
o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output |
96 |
|
o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added |
97 |
|
o staggerTimeStep & NLFS: rescale T & S surface tendencies. |
98 |
|
affects (truncation error) output of lab_sea & natl_box exp.: updated |
99 |
|
o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.) |
100 |
|
|
101 |
|
checkpoint54a_post |
102 |
|
o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order). |
103 |
|
o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.) |
104 |
|
o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished) |
105 |
|
o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D) |
106 |
|
+ internal_wave (shift in writing cg2d_ini_res) |
107 |
|
checkpoint54a_pre |
108 |
|
|
109 |
|
o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice |
110 |
|
- modified verification/lab_sea and natl_box_adjoint accordingly |
111 |
|
|
112 |
|
checkpoint54 |
113 |
|
checkpoint53g_post |
114 |
|
o prepare splitting of thermodynamics: store convect.counter in common block |
115 |
|
o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error) |
116 |
|
output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave |
117 |
|
o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection |
118 |
|
o new parameter "nShapS": allow to treat differently S from T (nShapT) |
119 |
|
o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S) |
120 |
|
o restore adjointability |
121 |
|
|
122 |
|
checkpoint53f_post |
123 |
|
o modifications that affect AIM experiment results (update output.txt): |
124 |
|
- no advection of S at top interface Nr (pkg/generic_advdiff) |
125 |
|
- air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F) |
126 |
|
o AIM pkg: |
127 |
|
- include stability function into surf.Flux derivative relative to Tsurf |
128 |
|
- calculate clear-sky radiation & surface temp. change (for diagnostics) |
129 |
|
|
130 |
|
checkpoint53e_post |
131 |
|
o merged cylindrical coord configuration |
132 |
|
o added rotating_tank experiment |
133 |
|
checkpoint53e_pre |
134 |
|
|
135 |
|
checkpoint53d_post |
136 |
|
o faulks upgraded: re-generate output.txt that have changed: |
137 |
|
global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box |
138 |
|
o Added Bryan and Lewis, 1979, vertical diffusivity profile |
139 |
|
o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing. |
140 |
|
o added Sadourny discretization of Coriolis |
141 |
|
- moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h |
142 |
|
- re-enabled use of omega3 (useAbsVorticity) |
143 |
|
o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for |
144 |
|
vector-invariant equations |
145 |
|
- note: does *NOT* yet use same variable visc. for no-slip BC's. |
146 |
|
o recoded the lateral boundary conditions for non-hydrostatic w, this time |
147 |
|
hopefully without new bugs |
148 |
|
- still to do: biharmonic friction for non-hydrostatic w |
149 |
|
o bug fix for mom_*_sidedrag: rA -> rAs,rAw |
150 |
|
o regenerated output for global_ocean_ebm (using -ieee) |
151 |
|
o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation |
152 |
|
of mom_common/ |
153 |
|
- simple re-arrangement of instructions within computing loop |
154 |
|
checkpoint53d_pre |
155 |
|
|
156 |
|
checkpoint53c_post |
157 |
|
o new version of coupler for AIM+thSIce and Ocean models |
158 |
|
- new fields (SSS,h_MixLayer ...) are exchanged through the coupler |
159 |
|
- land: change Evaporation of snow |
160 |
|
- aim with thSIce: fix bug in snow-precip. |
161 |
|
o changes to calc_gw.F |
162 |
|
- bug fix for w^2 term near the bottom boundary |
163 |
|
- (hopefully) improve the lateral slip boundary condtions for use with |
164 |
|
partial/looped cells |
165 |
|
- because the bug fix changes two verification experiments anyway (exp5 |
166 |
|
and plume on slope), change the lateral boundary condition from half slip |
167 |
|
to the value of no_slip_sides |
168 |
|
o ebm package wasnt quite up to the parallel task. Fixed that. |
169 |
|
o Adjoint of EBM package + verification |
170 |
|
* TLM OK |
171 |
|
* ADM not sufficient accuracy yet (needs further testing) |
172 |
|
|
173 |
|
checkpoint53b_post |
174 |
|
o Commiting new energy balance model to repository |
175 |
|
* package is pkg/ebm |
176 |
|
* verif. is verification/global_ocean_ebm |
177 |
|
* references are in ebm_driver.F |
178 |
|
C * X. Wang, P. Stone and J. Marotzke, 1999: |
179 |
|
C Global thermohaline circulation. Part I: |
180 |
|
C Sensitivity to atmospheric moisture transport. |
181 |
|
C J. Climate 12(1), 71-82 |
182 |
|
C * X. Wang, P. Stone and J. Marotzke, 1999: |
183 |
|
C Global thermohaline circulation. Part II: |
184 |
|
C Sensitivity with interactive transport. |
185 |
|
C J. Climate 12(1), 83-91 |
186 |
|
C * M. Nakamura, P. Stone and J. Marotzke, 1994: |
187 |
|
C Destabilization of the thermohaline circulation |
188 |
|
C by atmospheric eddy transports. |
189 |
|
C J. Climate 7(12), 1870-1882 |
190 |
|
o Will need long integration testing. |
191 |
|
checkpoint53b_pre |
192 |
|
|
193 |
|
o created pkg/mom_common in preparation for variable viscosity code |
194 |
|
o renamed and split ini_mnc_io |
195 |
|
o pkg/land: only liquid water can diffuse or run-off |
196 |
|
o AIM using land: soil wetness availability account for snow |
197 |
|
o added printMapIncludesZeros to EEPARMS namelist |
198 |
|
|
199 |
|
checkpoint53a_post |
200 |
|
o restore TAMC compatiility for exf_constants.h |
201 |
|
(no usage of _d in .h) |
202 |
|
o Additional storing in KPP in an attempt to fix |
203 |
|
TAMC problem with adjoint of KPP code. |
204 |
|
(no success...) |
205 |
|
Identical code works fine with TAF. |
206 |
|
o Fixed verification/natl_box_adjoint experiments. |
207 |
|
Initial conditions for Experiments 4 and 5 are now |
208 |
|
set to "SEAICE_initialHEFF=0", which is more reasonable, |
209 |
|
and hence gives results closer to that of Experiment 2. |
210 |
|
Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again. |
211 |
|
|
212 |
|
checkpoint53 |
213 |
|
o stable checkpoint with up to date adjoint |
214 |
|
TLM tests only run for 1st grdchk at the moment. Its unclear if |
215 |
|
this is a code problem or a problem with resetting code for g_ |
216 |
|
variables that is being autogenerated wrong. |
217 |
|
Otherwise: |
218 |
|
o code is testing well on Linux (P4 and AMD), SGI Alitix and Irix. |
219 |
|
o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ) |
220 |
|
are both still in chaos following their security messes. |
221 |
|
|
222 |
|
checkpoint52n_post |
223 |
|
o various build (mostly genmake2) changes including: |
224 |
|
- ability to build/run more easily within Cygwin and MacOS X |
225 |
|
- more complicated Makefiles with a stronger dependence on Gnu Make |
226 |
o pkg/seaice modifications |
o pkg/seaice modifications |
227 |
|
- added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost |
228 |
|
of pkg/seaice. For time being, SEAICE_deltaTtherm = deltaTtracer |
229 |
|
and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm |
230 |
- changed proxy for geostrophic velocity and updated |
- changed proxy for geostrophic velocity and updated |
231 |
verification/lab_sea/results/output.txt accordingly |
verification/lab_sea/results/* accordingly |
232 |
- removed ADI dynamic solver from pkg/seaice |
- removed ADI dynamic solver from pkg/seaice |
233 |
- replaced all occurrences of 1/CSTICE or 1/CSUICE |
- replaced all occurrences of 1/CSTICE or 1/CSUICE |
234 |
they caused a segmentation fault under certain circumstances |
they caused a segmentation fault under certain circumstances |