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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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6 |
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o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated |
7 |
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o re-work pkg/thsice interface with ocean & bulk_force pkg to allow |
8 |
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atmospheric model (AIM) to use it ; add a "slab ocean" component. |
9 |
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o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice) |
10 |
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o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice |
11 |
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o extending useSingleCpuIO option to work with new exch2 I/O format |
12 |
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- old-style, missing-tile I/O is still accessible by defining CPP |
13 |
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option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h |
14 |
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o monitor package can write to NetCDF files and/or STDOUT |
15 |
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o fix re-definition bug in MNC_GRID_INIT_ALL() |
16 |
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o doc/api_reference added |
17 |
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- a framework for building an API Reference Manual using all |
18 |
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the "protex" comments embedded in the code |
19 |
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- see pkg/generic_advdiff, pkg/mnc for examples |
20 |
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o MNC: |
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- make myThid the last argument for all subroutines |
22 |
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- new default for the grid files: NO halos |
23 |
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- add useMNC and other run-time flags |
24 |
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- separate per-file-group handling of the unlimited dimension |
25 |
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- early initialization of MNC w/ flags read at the eeboot stage |
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and lookup tables set in initialize_fixed |
27 |
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- write all MNC output to a freshly-created directory |
28 |
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o thermodynamics sea-ice (thsice) is now tested with testreport. |
29 |
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o test exp. advect_cs: use the standard cs32 grid ; update output. |
30 |
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o Added functionality to grdchk: |
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pick global i,j,k position (or nearest wet) where to perform check. |
32 |
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|
33 |
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checkpoint52l_post |
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o new land formulation: |
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a) use ground enthalpy as prognostic variable to ensure exact |
36 |
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energy conservation. |
37 |
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b) account for water temperature and for latent heat of freezing |
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in all processes (rain, run-off, ground storage) |
39 |
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c) compute surface and ground temperature implicitly. |
40 |
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o aim_v23 modification for new land model: |
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a) Treat separately land / ocean / sea-ice surface fluxes |
42 |
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to allow implicit computation of land & sea-ice surface temp. |
43 |
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b) add snow precipitation. |
44 |
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checkpoint52l_pre |
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46 |
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o fix problem (when 1 tile is empty) in min/max monitor. |
47 |
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o fix bug in timeAve (u,vZetatave in common block) |
48 |
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o no restoring terms under ice for pkg/seaice |
49 |
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o moved SEAICE_DO_DIAGS to S/R do_the_model_io |
50 |
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o bug fix for pkg/seaice pickups |
51 |
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o change MNC call locations and add coordinate attributes |
52 |
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o mask vorticity at the corner ; affects global_ocean.cs output |
53 |
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o fix ini_curvilinear_grid ; test CS experiments with mpi |
54 |
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o aim.5l_cs: modify sea-ice fraction input file ; update output |
55 |
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o exf: Adding simple range check routine for exf fields after read |
56 |
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57 |
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checkpoint52k_post |
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o removed top-level directory "diags" |
59 |
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- we migrated these functions to pkg/timeave a long time ago |
60 |
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o fixed bug introduced in pkg/monitor |
61 |
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o accuracy ctrlprec = 32 insuffient for gradient checks using |
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averaged fields (I/O via cost_averages) |
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-> use ctrl.h in active_file*.F to control I/O precision. |
64 |
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o paramter list of CALL ADTHE_MAIN_LOOP |
65 |
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o added initial do_the_model_io to ecco |
66 |
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o set all ...Freq to zero after cost_final |
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taveFreq, dumpFreq, pChkptFreq |
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o MAIN and ECCO differentiability restored |
69 |
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70 |
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checkpoint52j_post |
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o fix nchklev in tamc.h for global_ocean... |
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o Bringing flow and store directives up-to-date |
73 |
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o Really weird thing! |
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call do_the_model_io from the_main_loop with parameters |
75 |
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starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
76 |
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TAF places a faulty re-call of initialise_varia |
77 |
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after cost_final call which should not be there! |
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checkpoint52j_pre |
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|
80 |
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o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
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error messages |
82 |
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o fix errorMessageUnit problem. remove old version of mdsio from eesup/src |
83 |
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o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating |
84 |
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debug output |
85 |
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o modfied mdsio_writefield.F to handle non-global files under exch2 |
86 |
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o update AIM Cubed-Sphere exp (aim.5l_cs): |
87 |
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use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
88 |
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o update AIM Equatorial Channel exp: |
89 |
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use standard aim_v23 pkg and change the SST fields to be more realistic. |
90 |
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o globalFile now works with exch2 |
91 |
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o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
92 |
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mon_vort3.F to make exch2 friendly with >1 tile per cube face |
93 |
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o limit timeave output for hi-res integrations |
94 |
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95 |
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checkpoint52i_post |
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o removed CPP_EEOPTIONS.h from verification/*/code |
97 |
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o updated the tiling for global_ocean_pressure |
98 |
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checkpoint52i_pre |
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100 |
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o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
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the old pkg/aim). |
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103 |
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checkpoint52h_pre |
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o shortened offending lines in exch2_send_rx?.template |
105 |
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o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
106 |
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o genmake2: add build & execute test for NetCDF code |
107 |
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o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
108 |
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old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
109 |
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o added useSingleCPUIO flag to monitor.F and mon_out.F |
110 |
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o added temporary hack for sea-ice dynamics on the cube: |
111 |
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metric terms are ignored and it is assumed that |
112 |
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there is no sea-ice on cube faces 1, 2, 4, and 5. |
113 |
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114 |
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checkpoint52f_post |
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o added exch2 cube routines to pkg/exch2 |
116 |
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o modified hs94.cs-32x32x5 to use it |
117 |
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o added new grid files to hs94.cs-32x32x5 |
118 |
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checkpoint52f_pre |
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120 |
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checkpoint52e_post |
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o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
122 |
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for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
123 |
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o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
124 |
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to work with implicit vertical advection and AB ; |
125 |
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o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
126 |
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o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
127 |
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front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
128 |
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checkpoint52e_pre |
129 |
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130 |
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o fix bug in impldiff when Nr=1 or Nr=2. |
131 |
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o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
132 |
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o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test. |
133 |
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o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
134 |
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ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
135 |
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o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |
136 |
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o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
137 |
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o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
138 |
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139 |
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checkpoint52d_post |
140 |
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o re-tiled many expts to allow comparison in multi-processor mode |
141 |
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- updated output accordingly |
142 |
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- changed hs94.128x64x5 to use intial T from file rather than use the |
143 |
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random number generator |
144 |
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o add infrastructure in model routines for fizhi and gridalt packages |
145 |
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o change global_ocean.cs32x15 because of Pb with GM on CS-grid. |
146 |
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o changes to permit hi-res, cubed-sphere, configuration |
147 |
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- added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F |
148 |
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- added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F |
149 |
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- added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation |
150 |
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of surface winds for the cube |
151 |
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(A verification experiment, based on global_ocean.cs32x15, but with |
152 |
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pkg/seaice turned on and with on-the-fly interpolation from the NCEP |
153 |
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Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice, |
154 |
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complete with example surface forcing files and matlab scripts to look |
155 |
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at the output and compare it with that of global_ocean.cs32x15.) |
156 |
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o packages pickup: $PKG_write_pickup called from packages_write_pickup ; |
157 |
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but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code |
158 |
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to conform to the common rule. |
159 |
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o check-in the first version of the coupler + interfaces for multi-components |
160 |
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set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI. |
161 |
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- imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD). |
162 |
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- atmosphere: use pkg aim_v23 ; no sea-ice for now. |
163 |
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- ocean and atmos. share the same horizontal grid (no interpolation). |
164 |
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- exchanges between component and coupler is done in forward_step |
165 |
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o new verification experiment, cpl_aim+ocn: |
166 |
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coupled ocean - AIM atmosphere on cs32 grid. |
167 |
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168 |
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checkpoint52d_pre |
169 |
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o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
170 |
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o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
171 |
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172 |
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checkpoint52c_post |
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o Fixing OPTIONS files for use of exf: |
174 |
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- ALLOW_ECCO not needed |
175 |
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- ECCO_CPPOPTIONS.h should not be included from |
176 |
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EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h |
177 |
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as has been the case in the past |
178 |
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- All cal/exf related options are currently set in |
179 |
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single header file. Should remain so until we |
180 |
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agree on a consistent new policy. |
181 |
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o Removed all CPP options for cal package. |
182 |
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cal has no more CPP options. |
183 |
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o modified STOREs in GAD_ADVECTION |
184 |
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o corrected key comp. for passkey |
185 |
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186 |
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checkpoint52b_post |
187 |
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o new version: "thsice" of thermodynamic sea-ice pkg: |
188 |
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- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
189 |
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- modify fluxes but do not change theta directly; |
190 |
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- light cleaning of bulk_force pkg (still needed with thsice). |
191 |
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- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
192 |
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+ output_thsice.txt to test thsice & bulk_force pkgs. |
193 |
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o put back grid & coriolis monitor output. |
194 |
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checkpoint52b_pre |
195 |
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|
196 |
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o call "do_the_model_io" at the beginning (=> dump initial state) |
197 |
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o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
198 |
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o sort out interplay between tamc.h and PTRACERS_OPTIONS.h |
199 |
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(need info on NUMBER_OF_PTRACERS) |
200 |
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o missing PTRACERS headers in some routines |
201 |
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o default tamc.h in pkg/autodiff supposed to crash |
202 |
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to ensure proper customization |
203 |
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204 |
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checkpoint52a_post |
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o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
206 |
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- moved surfaceTendencyTice from pkg/seaice to main code |
207 |
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- subroutine FREEZE_SURFACE now limits only surface temperature |
208 |
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and is called in FORWARD_STEP (if allowFreezing=.TRUE.) |
209 |
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=> new output.txt for global_ocean.cs32x15 & global_with_exf |
210 |
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- keep the old version of FREEZE for backward compatibility; |
211 |
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global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE. |
212 |
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- corresponding modifs for TAF directives |
213 |
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o added surface flux output variables to TIMEAVE_STATVARS |
214 |
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o time-averaged output for pkg/ptracers |
215 |
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o fix problem with ECCO-related divided adjoint |
216 |
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snapshot file was missing some ad-variables, |
217 |
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but no warning issued by TAF |
218 |
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|
219 |
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checkpoint52a_pre |
220 |
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o some bug fixes for #undef REAL4_IS_SLOW |
221 |
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222 |
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checkpoint52 = ecco_c52_e35 |
223 |
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o after testing adjoints of checkpoint51u_post |
224 |
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225 |
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checkpoint51u_post |
226 |
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o this is the post-merge tag of the ecco-branch |
227 |
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(needs another clean checkout and re-testing) |
228 |
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o various natl_box_adjoint configs and results |
229 |
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but no input fields |
230 |
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o obcs adjoint not yet merged! |
231 |
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o adding ECCO global 1x1 and 2x2 degree configs |
232 |
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o updated/extended some store directives for seaice |
233 |
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o pkg/ecco now containes ecco-specific part of cost function |
234 |
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o top level routines the_main_loop, forward_step |
235 |
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supersede those in model/src/ |
236 |
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previous input data.cost now in data.ecco |
237 |
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(new namelist ecco_cost_nml) |
238 |
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o in ctrl/ cleaned some cross-dependencies and updated CPP options |
239 |
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|
240 |
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checkpoint51t_post |
241 |
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o this is the pre-merge tag of the ecco-branch |
242 |
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|
243 |
checkpoint51s_post |
checkpoint51s_post |
244 |
o cleanup: removed various obsolete #define-s |
o cleanup: removed various obsolete #define-s |
245 |
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o pkg/grdchk |
246 |
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- renamed 'ph-grd 3' to 'grad-res' |
247 |
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- merged from ecco-branch |
248 |
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(remaining bug fixes for obcs gradient checks) |
249 |
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- additional high-precision output for testreport |
250 |
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(grep for 'precision_grdchk_result') |
251 |
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|
252 |
checkpoint51r_post |
checkpoint51r_post |
253 |
o cleaned up or removed CPP_OPTIONS.h files |
o cleaned up or removed CPP_OPTIONS.h files |