3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
o fix in pkg/thsice: |
7 |
|
- update Evap (Tsf changes) to be consistent with Latent heat flux |
8 |
|
- maintain snow precipitation unchanged (even if Tsf >=0). |
9 |
|
both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice |
10 |
|
|
11 |
untagged |
checkpoint52m_post |
12 |
|
o commented out call to cal_GetMonthsRec in swfrac.F and added some comments; |
13 |
|
this does not change any of the results, because myIter=0 in swfrac always |
14 |
|
lead to jwtype=2 (the default anyway), but the call makes little sense |
15 |
|
as a default |
16 |
|
o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated |
17 |
|
o re-work pkg/thsice interface with ocean & bulk_force pkg to allow |
18 |
|
atmospheric model (AIM) to use it ; add a "slab ocean" component. |
19 |
|
o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice) |
20 |
|
o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice |
21 |
|
o extending useSingleCpuIO option to work with new exch2 I/O format |
22 |
|
- old-style, missing-tile I/O is still accessible by defining CPP |
23 |
|
option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h |
24 |
|
o monitor package can write to NetCDF files and/or STDOUT |
25 |
|
o fix re-definition bug in MNC_GRID_INIT_ALL() |
26 |
|
o doc/api_reference added |
27 |
|
- a framework for building an API Reference Manual using all |
28 |
|
the "protex" comments embedded in the code |
29 |
|
- see pkg/generic_advdiff, pkg/mnc for examples |
30 |
|
o MNC: |
31 |
|
- make myThid the last argument for all subroutines |
32 |
|
- new default for the grid files: NO halos |
33 |
|
- add useMNC and other run-time flags |
34 |
|
- separate per-file-group handling of the unlimited dimension |
35 |
|
- early initialization of MNC w/ flags read at the eeboot stage |
36 |
|
and lookup tables set in initialize_fixed |
37 |
|
- write all MNC output to a freshly-created directory |
38 |
|
o thermodynamics sea-ice (thsice) is now tested with testreport. |
39 |
|
o test exp. advect_cs: use the standard cs32 grid ; update output. |
40 |
|
o Added functionality to grdchk: |
41 |
|
pick global i,j,k position (or nearest wet) where to perform check. |
42 |
|
|
43 |
|
checkpoint52l_post |
44 |
|
o new land formulation: |
45 |
|
a) use ground enthalpy as prognostic variable to ensure exact |
46 |
|
energy conservation. |
47 |
|
b) account for water temperature and for latent heat of freezing |
48 |
|
in all processes (rain, run-off, ground storage) |
49 |
|
c) compute surface and ground temperature implicitly. |
50 |
|
o aim_v23 modification for new land model: |
51 |
|
a) Treat separately land / ocean / sea-ice surface fluxes |
52 |
|
to allow implicit computation of land & sea-ice surface temp. |
53 |
|
b) add snow precipitation. |
54 |
|
checkpoint52l_pre |
55 |
|
|
56 |
|
o fix problem (when 1 tile is empty) in min/max monitor. |
57 |
|
o fix bug in timeAve (u,vZetatave in common block) |
58 |
|
o no restoring terms under ice for pkg/seaice |
59 |
|
o moved SEAICE_DO_DIAGS to S/R do_the_model_io |
60 |
|
o bug fix for pkg/seaice pickups |
61 |
|
o change MNC call locations and add coordinate attributes |
62 |
|
o mask vorticity at the corner ; affects global_ocean.cs output |
63 |
|
o fix ini_curvilinear_grid ; test CS experiments with mpi |
64 |
|
o aim.5l_cs: modify sea-ice fraction input file ; update output |
65 |
|
o exf: Adding simple range check routine for exf fields after read |
66 |
|
|
67 |
|
checkpoint52k_post |
68 |
|
o removed top-level directory "diags" |
69 |
|
- we migrated these functions to pkg/timeave a long time ago |
70 |
|
o fixed bug introduced in pkg/monitor |
71 |
|
o accuracy ctrlprec = 32 insuffient for gradient checks using |
72 |
|
averaged fields (I/O via cost_averages) |
73 |
|
-> use ctrl.h in active_file*.F to control I/O precision. |
74 |
|
o paramter list of CALL ADTHE_MAIN_LOOP |
75 |
|
o added initial do_the_model_io to ecco |
76 |
|
o set all ...Freq to zero after cost_final |
77 |
|
taveFreq, dumpFreq, pChkptFreq |
78 |
|
o MAIN and ECCO differentiability restored |
79 |
|
|
80 |
|
checkpoint52j_post |
81 |
|
o fix nchklev in tamc.h for global_ocean... |
82 |
|
o Bringing flow and store directives up-to-date |
83 |
|
o Really weird thing! |
84 |
|
call do_the_model_io from the_main_loop with parameters |
85 |
|
starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
86 |
|
TAF places a faulty re-call of initialise_varia |
87 |
|
after cost_final call which should not be there! |
88 |
|
checkpoint52j_pre |
89 |
|
|
90 |
|
o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
91 |
|
error messages |
92 |
|
o fix errorMessageUnit problem. remove old version of mdsio from eesup/src |
93 |
|
o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating |
94 |
|
debug output |
95 |
|
o modfied mdsio_writefield.F to handle non-global files under exch2 |
96 |
|
o update AIM Cubed-Sphere exp (aim.5l_cs): |
97 |
|
use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
98 |
|
o update AIM Equatorial Channel exp: |
99 |
|
use standard aim_v23 pkg and change the SST fields to be more realistic. |
100 |
|
o globalFile now works with exch2 |
101 |
|
o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
102 |
|
mon_vort3.F to make exch2 friendly with >1 tile per cube face |
103 |
|
o limit timeave output for hi-res integrations |
104 |
|
|
105 |
|
checkpoint52i_post |
106 |
|
o removed CPP_EEOPTIONS.h from verification/*/code |
107 |
|
o updated the tiling for global_ocean_pressure |
108 |
|
checkpoint52i_pre |
109 |
|
|
110 |
|
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
111 |
|
the old pkg/aim). |
112 |
|
|
113 |
|
checkpoint52h_pre |
114 |
|
o shortened offending lines in exch2_send_rx?.template |
115 |
|
o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
116 |
|
o genmake2: add build & execute test for NetCDF code |
117 |
|
o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
118 |
|
old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
119 |
|
o added useSingleCPUIO flag to monitor.F and mon_out.F |
120 |
|
o added temporary hack for sea-ice dynamics on the cube: |
121 |
|
metric terms are ignored and it is assumed that |
122 |
|
there is no sea-ice on cube faces 1, 2, 4, and 5. |
123 |
|
|
124 |
|
checkpoint52f_post |
125 |
|
o added exch2 cube routines to pkg/exch2 |
126 |
|
o modified hs94.cs-32x32x5 to use it |
127 |
|
o added new grid files to hs94.cs-32x32x5 |
128 |
|
checkpoint52f_pre |
129 |
|
|
130 |
|
checkpoint52e_post |
131 |
|
o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
132 |
|
for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
133 |
|
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
134 |
|
to work with implicit vertical advection and AB ; |
135 |
|
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
136 |
|
o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
137 |
|
front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
138 |
|
checkpoint52e_pre |
139 |
|
|
140 |
|
o fix bug in impldiff when Nr=1 or Nr=2. |
141 |
|
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
142 |
|
o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test. |
143 |
|
o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
144 |
|
ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
145 |
|
o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |
146 |
|
o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
147 |
|
o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
148 |
|
|
149 |
|
checkpoint52d_post |
150 |
|
o re-tiled many expts to allow comparison in multi-processor mode |
151 |
|
- updated output accordingly |
152 |
|
- changed hs94.128x64x5 to use intial T from file rather than use the |
153 |
|
random number generator |
154 |
|
o add infrastructure in model routines for fizhi and gridalt packages |
155 |
|
o change global_ocean.cs32x15 because of Pb with GM on CS-grid. |
156 |
|
o changes to permit hi-res, cubed-sphere, configuration |
157 |
|
- added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F |
158 |
|
- added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F |
159 |
|
- added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation |
160 |
|
of surface winds for the cube |
161 |
|
(A verification experiment, based on global_ocean.cs32x15, but with |
162 |
|
pkg/seaice turned on and with on-the-fly interpolation from the NCEP |
163 |
|
Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice, |
164 |
|
complete with example surface forcing files and matlab scripts to look |
165 |
|
at the output and compare it with that of global_ocean.cs32x15.) |
166 |
|
o packages pickup: $PKG_write_pickup called from packages_write_pickup ; |
167 |
|
but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code |
168 |
|
to conform to the common rule. |
169 |
|
o check-in the first version of the coupler + interfaces for multi-components |
170 |
|
set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI. |
171 |
|
- imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD). |
172 |
|
- atmosphere: use pkg aim_v23 ; no sea-ice for now. |
173 |
|
- ocean and atmos. share the same horizontal grid (no interpolation). |
174 |
|
- exchanges between component and coupler is done in forward_step |
175 |
|
o new verification experiment, cpl_aim+ocn: |
176 |
|
coupled ocean - AIM atmosphere on cs32 grid. |
177 |
|
|
178 |
|
checkpoint52d_pre |
179 |
|
o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
180 |
|
o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
181 |
|
|
182 |
|
checkpoint52c_post |
183 |
|
o Fixing OPTIONS files for use of exf: |
184 |
|
- ALLOW_ECCO not needed |
185 |
|
- ECCO_CPPOPTIONS.h should not be included from |
186 |
|
EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h |
187 |
|
as has been the case in the past |
188 |
|
- All cal/exf related options are currently set in |
189 |
|
single header file. Should remain so until we |
190 |
|
agree on a consistent new policy. |
191 |
|
o Removed all CPP options for cal package. |
192 |
|
cal has no more CPP options. |
193 |
|
o modified STOREs in GAD_ADVECTION |
194 |
|
o corrected key comp. for passkey |
195 |
|
|
196 |
|
checkpoint52b_post |
197 |
|
o new version: "thsice" of thermodynamic sea-ice pkg: |
198 |
|
- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
199 |
|
- modify fluxes but do not change theta directly; |
200 |
|
- light cleaning of bulk_force pkg (still needed with thsice). |
201 |
|
- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
202 |
|
+ output_thsice.txt to test thsice & bulk_force pkgs. |
203 |
|
o put back grid & coriolis monitor output. |
204 |
|
checkpoint52b_pre |
205 |
|
|
206 |
|
o call "do_the_model_io" at the beginning (=> dump initial state) |
207 |
|
o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
208 |
|
o sort out interplay between tamc.h and PTRACERS_OPTIONS.h |
209 |
|
(need info on NUMBER_OF_PTRACERS) |
210 |
|
o missing PTRACERS headers in some routines |
211 |
|
o default tamc.h in pkg/autodiff supposed to crash |
212 |
|
to ensure proper customization |
213 |
|
|
214 |
|
checkpoint52a_post |
215 |
|
o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
216 |
|
- moved surfaceTendencyTice from pkg/seaice to main code |
217 |
|
- subroutine FREEZE_SURFACE now limits only surface temperature |
218 |
|
and is called in FORWARD_STEP (if allowFreezing=.TRUE.) |
219 |
|
=> new output.txt for global_ocean.cs32x15 & global_with_exf |
220 |
|
- keep the old version of FREEZE for backward compatibility; |
221 |
|
global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE. |
222 |
|
- corresponding modifs for TAF directives |
223 |
|
o added surface flux output variables to TIMEAVE_STATVARS |
224 |
|
o time-averaged output for pkg/ptracers |
225 |
|
o fix problem with ECCO-related divided adjoint |
226 |
|
snapshot file was missing some ad-variables, |
227 |
|
but no warning issued by TAF |
228 |
|
|
229 |
|
checkpoint52a_pre |
230 |
o some bug fixes for #undef REAL4_IS_SLOW |
o some bug fixes for #undef REAL4_IS_SLOW |
231 |
|
|
232 |
checkpoint52 = ecco_c52_e35 |
checkpoint52 = ecco_c52_e35 |