3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
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|
6 |
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checkpoint51j_post |
7 |
|
o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
8 |
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o adjusted some flow directives (dynamics, thermodynamics) |
9 |
|
o added cubed-sphere case to test cost function |
10 |
|
o heckpoint_lev?_directives.h now include |
11 |
|
pkg-specific directives, whenever those are enabled. |
12 |
|
o Moving pkg-specific flow directives to corresponding pkg |
13 |
|
Moving pkg-specific differentiation list to corresponding pkg |
14 |
|
Moving pkg-specific checkpoint-lev storing to corresponding pkg |
15 |
|
---> conventions are |
16 |
|
- pkg_ad.flow |
17 |
|
- pkg_ad_diff.list |
18 |
|
- pkg_ad_check_lev?_dir.h |
19 |
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|
20 |
|
checkpoint51i_post |
21 |
|
o merge of the branch-genmake2 |
22 |
|
- knowingly breaks the older genmake |
23 |
|
- automatic generation of all ALLOW_${PKG_NAME} defines |
24 |
|
- new testreport supersedes older testscript |
25 |
|
o large number of package inclusion and header cleanups |
26 |
|
checkpoint51i_pre |
27 |
|
|
28 |
|
o new output for adjoin of global ocean vector invariant |
29 |
|
o fix for checkpoint of thermodynamic seaice and bulk_force |
30 |
|
o Steph gchem various cleanups |
31 |
|
|
32 |
|
checkpoint 51h_pre |
33 |
|
o fixed some single quotes |
34 |
|
o modify gchem pkg to be more versatile |
35 |
|
o modifications to clean up dic pkg |
36 |
|
o add pkg/cfc |
37 |
|
|
38 |
|
checkpoint51g_post |
39 |
|
o provide links for ARPACK and ADM*TLM |
40 |
|
o start removing verification/vero/ |
41 |
|
o update AD-related stuff |
42 |
|
(in particular some IF-statements in model/src/ routines) |
43 |
|
o adding to verification/global_ocean.90x40x15/ adjoint of |
44 |
|
vector invariant setup |
45 |
|
|
46 |
|
checkpoint51f_post |
47 |
|
o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
48 |
|
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
49 |
|
of tracer Green's fucntions for ocean inversion project. |
50 |
|
|
51 |
|
checkpoint51f_pre |
52 |
|
o Added on-the-fly spatial interpolation capability |
53 |
|
"USE_EXF_INTERPOLATION" to pkg/exf. |
54 |
|
- This is a temporary Cartesian-grid hack until |
55 |
|
the super-duper ESMF coupler becomes available. |
56 |
|
- See verification/global_with_exf/README for usage example. |
57 |
|
- Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid |
58 |
|
flags and modified pkg/seaice accordingly. |
59 |
|
o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, |
60 |
|
and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
61 |
|
non-local transport term. |
62 |
|
|
63 |
|
checkpoint51e_post |
64 |
|
o pkg/mom_vecinv: |
65 |
|
- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
66 |
|
- add time-ave diagnostic of vorticity advection. |
67 |
|
o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. |
68 |
|
o atmospheric geopotential: - include water vapor effect; |
69 |
|
- use p^kappa in p* scaling. |
70 |
|
o land pkg: read initial state from files. |
71 |
|
o AIM : add stratospheric drag in the upper level |
72 |
|
|
73 |
|
checkpoint51d_post |
74 |
|
o change function ILNBLNK (=> last non-blank char.) to return zero |
75 |
|
(instead of the string length) when the string. char is empty |
76 |
|
o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
77 |
|
o modif's to restore TAMC compatibility |
78 |
|
- avoid "_d" constructs in PARAMETER declarations |
79 |
|
- avoid interrupting lines by comment lines |
80 |
|
o Use cluster local disks for purely local I/O |
81 |
|
vs. globally visible disks needed for ctrl stuff |
82 |
|
(merged from ecco-branch) |
83 |
|
- new active_file_loc... and mdsio_..._loc routines |
84 |
|
- affected packages: autodiff, ctrl, grdchk, mdsio |
85 |
|
|
86 |
|
checkpoint51c_post |
87 |
|
o introducing integer flag debugLevel |
88 |
|
- debLevZero: suppress all output |
89 |
|
- debLevA: standard |
90 |
|
- debLevB: equivalent to current debugMode=.TRUE. |
91 |
|
o introducing pathname variable mdsioLocalDir for mdsio |
92 |
|
that can be specified at runtime |
93 |
|
(relevant for cluster I/O to local disk) |
94 |
|
` |
95 |
|
>>>checkpoint51b_post |
96 |
|
adjoint of ptracers |
97 |
|
o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM |
98 |
|
o extended state in checkpoint_lev?, etc. |
99 |
|
o alternative ctrl/cost with tr1 or ptracer |
100 |
|
o new comlev1_bibj_ptracers |
101 |
|
o new ptracers.flow |
102 |
|
o made ptracers_forcing same as external_forcing_s |
103 |
|
o added verification for adjoint with ptracers |
104 |
|
- adm. grdchk fail so far |
105 |
|
- tlm. grdchk OK |
106 |
|
- checked tapelev/comlev recomputations: OK |
107 |
|
<<<checkpoint51b_pre |
108 |
|
|
109 |
|
checkpoint51a_post |
110 |
|
o added code for biogeochemistry package |
111 |
|
- new pkgs: dic, gchem |
112 |
|
- new subroutine in ptracers |
113 |
|
o modify code for biogeo packages |
114 |
|
- in model/src and pkg/ptracers |
115 |
|
|
116 |
|
checkpoint51 |
117 |
|
o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
118 |
|
- autodiff, ctrl, exf, grdchk, seaice |
119 |
|
kept separate packages |
120 |
|
- cost, ecco, obcs |
121 |
|
o updating verification/internal_wave, verification/lab_sea |
122 |
|
(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
123 |
|
|
124 |
|
checkpoint50i_post |
125 |
|
o Preparing next differentiable checkpoint and sync |
126 |
|
of MAIN vs. ecco-branch |
127 |
|
- 1st step: this one is differentiable |
128 |
|
- 2nd step: next(! not this) checkpoint will have updated packages |
129 |
|
from ecco-branch) |
130 |
|
|
131 |
|
checkpoint50h_post |
132 |
|
o new package "land": provide surface BC for AIM. |
133 |
|
o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
134 |
|
o AIM: use true log-P extrapolation for near surface temp (= as in |
135 |
|
F.Molteni paper) ; update aim.5l_cs output. |
136 |
|
o New variable in PARM03 for more flexible pickups |
137 |
|
o somewhat cleaned package initialisation sequence for |
138 |
|
ctrl/ cost/ ecco/ in packages_... routines |
139 |
|
|
140 |
|
checkpoint50g_post |
141 |
|
o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
142 |
|
- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
143 |
|
- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
144 |
|
made the default because of faster convergence than ADI |
145 |
|
|
146 |
|
checkpoint50f_post |
147 |
|
o exf totally restructured |
148 |
|
- replaced all exf_set_ routines by one generic exf_set_gen.F |
149 |
|
and made sure it's still differentiable |
150 |
|
- split exf_getffields.F into new exf_bulkformulae.F |
151 |
|
- exf_inscal_/exf_outscal_ suffixes consistent with field names |
152 |
|
- updated adjoint/makefile and relevant verif. accordingly |
153 |
|
|
154 |
|
checkpoint50f_pre |
155 |
|
o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
156 |
|
+ change Evap over land. (update aim.5l_cs output) |
157 |
|
o added missing .cvsignores and made uniform across expts |
158 |
|
o changed configuration of tidal_basin_2d expt |
159 |
|
o added pkg/debug functions for tracing code in fatal crashes |
160 |
|
o tidied pkg/monitor to use MONITOR_OPTIONS.h |
161 |
|
o new fn in pkg/monitor to stop model if solution grows too big |
162 |
|
o removed lots of single quotes from comments |
163 |
|
|
164 |
|
checkpoint50e_post |
165 |
|
o make KPP work with PTRACERS |
166 |
|
- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
167 |
|
nearly a copy of kpp_transport_s |
168 |
|
- there is no analogue to SurfaceTendencyS, so I have to use |
169 |
|
gPtr(of the surface layer) instead |
170 |
|
o add a new platform SunFire+mpi (SunFire 15000) to genmake |
171 |
|
checkpoint50e_pre |
172 |
|
|
173 |
|
checkpoint50d_post |
174 |
|
o change kpp output from multiple-record state files to single-record state |
175 |
|
files analogous to write_state.F |
176 |
|
o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
177 |
|
analogous to the cg2d-related output. |
178 |
|
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
179 |
|
so that writing to internal file fn (with length 512) fails. |
180 |
|
checkpoint50d_pre |
181 |
|
|
182 |
|
checkpoint50c_post |
183 |
|
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
184 |
|
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
185 |
|
o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
186 |
|
o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
187 |
|
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
188 |
|
|
189 |
|
checkpoint50c_pre |
190 |
|
Merging from release1_p13: |
191 |
|
o bug fix for pkg/seaice dynamic solver |
192 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
193 |
|
|
194 |
|
checkpoint50b_post |
195 |
|
o store u*,v* in gU,V instead of in guNm1,gvNm1 |
196 |
|
o in order to put the momForcing out of the Adams-Bashforth: |
197 |
|
move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
198 |
|
to timestep.F |
199 |
|
o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays |
200 |
|
o re-generate output for highly sensitive test-exp: |
201 |
|
global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
202 |
|
|
203 |
|
checkpoint50b_pre |
204 |
|
o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
205 |
|
o corrected CPP option mismatch in exf_Bulk... functions for case |
206 |
|
#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
207 |
|
|
208 |
|
checkpoint50a_post |
209 |
|
o Bug fix for merging between c50 and KPP. |
210 |
|
ikey was passed from thermodynamics to kpp_calc via |
211 |
|
common block rather than being recomputed in kpp_calc, |
212 |
|
in contradiction with new key itdkey. |
213 |
|
New key ikppkey created, and tamc.h headers updated. |
214 |
|
|
215 |
|
checkpoint50 |
216 |
|
- 2nd step of merge with ecco-branch: |
217 |
|
merge changes in ecco-branch back into main trunk |
218 |
|
- bug fix in find_alpha |
219 |
|
- more storing in gmredi_calc_tensor.F, kpp_routines.F |
220 |
|
- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
221 |
|
- merged some sliced AD support routines |
222 |
|
|
223 |
|
checkpoint49 |
224 |
|
merged from ecco-branch: |
225 |
|
o exf: |
226 |
|
- Enable initialisation of forcing fields to constant |
227 |
|
(runtime) values. |
228 |
|
- in exf_getffields.F |
229 |
|
Reduce i-/j-loop to interior domain, discarding overlaps. |
230 |
|
That also fixes wrong TAF-key computations for key_1, key_2 |
231 |
|
with bulf formulae. |
232 |
|
- exf_init.F modify #ifdef for exf_init_evap |
233 |
|
- exf_getffieldrec.F, ctrl_getrec.F |
234 |
|
The following INT-usages are not safe: |
235 |
|
fldsecs = int(fldsecs/fldperiod)*fldperiod |
236 |
|
fldcount = int(fldsecs/fldperiod) + 1 |
237 |
|
and were modified. |
238 |
|
o autodiff: checkpoint_lev... |
239 |
|
- updated storing for bulk formulae (some arrays were missing) |
240 |
|
- added state for seaice package |
241 |
|
- synchronized with main branch |
242 |
|
o DIVA: |
243 |
|
Modif.s in |
244 |
|
- the_main_loop.F |
245 |
|
- the_model_main.F |
246 |
|
and added cost_final_restore.F cost_final_store.F |
247 |
|
o With these changes, it is possible to fully separate |
248 |
|
the first forward run to compute the cost function (mdthe_main_loop) |
249 |
|
and adjoint runs over individual DIVA intervals (adthe_main_loop) |
250 |
|
into separate model executions. |
251 |
|
This enables better tuning of DIVA to given queue sizes. |
252 |
|
o Loss of cost function value in consecutive DIVA runs is |
253 |
|
fixed by storing to 'costfinal' file. |
254 |
|
o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
255 |
|
beginning/end of adjoint integration is accounted for. |
256 |
|
The current changes apply to TAF-1.4.26. |
257 |
|
TAF has one remaining bug, requiring one manual change |
258 |
|
(see MITgcm manual). |
259 |
|
o cal: synchronized between MAIN and ecco-branch |
260 |
|
|
261 |
|
checkpoint48i_post |
262 |
|
o Changes to restore differentiability of code w.r.t. previous tag |
263 |
|
(mostly adding new routines to make list and replacing |
264 |
|
pressure by totPhiHyd). |
265 |
|
o Updated and merged grdchk package |
266 |
|
- has both ADM and TLM checks |
267 |
|
- works for single- and multi-proc. |
268 |
|
- output cleaned |
269 |
|
- worked successfully for parallel DIVA |
270 |
|
o genmake: |
271 |
|
- Adding -platform=SP4 |
272 |
|
- Modif. for DEC Alpha (many don't have makedepend; use mkdep instead). |
273 |
|
o Modif. for DIVA: |
274 |
|
ctrl_unpack should not be called in intermediate DIVA interval. |
275 |
|
(similar thing would apply for active files such as |
276 |
|
tbar, sbar, psbar, which should not be reinitialised; |
277 |
|
only relevant for ecco-branch) |
278 |
|
|
279 |
|
checkpoint48h_post |
280 |
|
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
281 |
|
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
282 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
283 |
|
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
284 |
|
|
285 |
|
checkpoint48g_post |
286 |
|
--- EOS: |
287 |
|
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
288 |
|
store total Potential in totPhyHyd for diagnostics & EOS. |
289 |
|
o fix restart and overlap Pb when using Z-coord and EOS funct. of P |
290 |
|
--- Pressure/geopotential gradient: |
291 |
|
o use Ro_surf & R_low instead of hFac in cal_phi_hyd: |
292 |
|
o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind |
293 |
|
( changes results of global_ocean_pressure ) |
294 |
|
o NLFS + z-coord.: add eta*Rho' contribution. |
295 |
|
o accurate phiHyd when using interface-W at the middle between 2 centers |
296 |
|
( changes results of ideal_2D_oce ) |
297 |
|
o includes r* 2nd term in potential gradient. |
298 |
|
|
299 |
|
checkpoint48f_post |
300 |
|
Merging from release1_p12: |
301 |
|
o Modifications for using pkg/exf with pkg/seaice |
302 |
|
- improved description of the various forcing configurations |
303 |
|
- added basic radiation bulk formulae to pkg/exf |
304 |
|
- units/sign fix for evap computation in exf_getffields.F |
305 |
|
- updated verification/global_with_exf/results/output.txt |
306 |
|
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
307 |
|
(SBO) core products, including oceanic mass, center-of-mass, |
308 |
|
angular, and bottom pressure (see pkg/sbo/README.sbo). |
309 |
|
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
310 |
|
to avoid negative values in shallow regions. |
311 |
|
- updated verification/natl_box/results/output.txt |
312 |
|
- updated verification/lab_sea/results/output.txt |
313 |
|
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
314 |
|
o Added useSingleCpuIO option (see PARAMS.h). |
315 |
|
o Updated useSingleCpuIO option in mdsio_writefield.F to |
316 |
|
work with multi-field files, e.g., for single-file pickup. |
317 |
|
o pkg/seaice: |
318 |
|
- bug fix in growth.F: QNET for no shortwave case |
319 |
|
- added HeffFile for specifying initial sea-ice thickness |
320 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
321 |
|
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
322 |
|
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
323 |
|
o pkg/seaice: |
324 |
|
- adjoint-friendly modifications |
325 |
|
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
326 |
|
|
327 |
|
checkpoint48e_post |
328 |
|
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
329 |
|
o dynamics: change definition of computational domain & adapt mom_fluxform |
330 |
|
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
331 |
|
o following exp works with Olx=Oly=2 (and pass through checkbounds option): |
332 |
|
adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1 |
333 |
|
exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5 hs94.1x64x5 |
334 |
|
global_ocean.90x40x15 global_with_exf global_ocean_pressure |
335 |
|
inverted_barometer solid-body.cs-32x32x1 |
336 |
|
(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
337 |
|
|
338 |
|
checkpoint48d_post |
339 |
|
o in preparation for r*: |
340 |
|
a) use pre-computed gradient of hydrostatic potential: |
341 |
|
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
342 |
|
b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd: |
343 |
|
=> affects results of glob_oce_pressure (different truncation error) |
344 |
|
update output.txt of ideal_2D_oce & global_ocean_pressure |
345 |
|
|
346 |
|
checkpoint48d_pre |
347 |
|
o in preparation for r*: |
348 |
|
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
349 |
|
pass the 2 comp. of the grad. as arguments to momentum S/R. |
350 |
|
but for the moment, only used if it does not change the results. |
351 |
|
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
352 |
|
|
353 |
|
checkpoint48c_post |
354 |
|
Modifications in treatment of initial flux forcing controls |
355 |
|
to avoid extra storing of flux fields. |
356 |
|
|
357 |
|
checkpoint48c_pre |
358 |
|
o Added tidal_basin_2d experiment (currently 1D!) |
359 |
|
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
360 |
|
|
361 |
|
checkpoint48b_post |
362 |
|
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
363 |
|
(modification to pressure gradient not yet implemented) |
364 |
|
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
365 |
|
(for U & V) that are used for vertical advection of momentum. |
366 |
|
|
367 |
|
checkpoint48a_post |
368 |
|
o In preparation for r*, use temp. array to compute vertical transport |
369 |
|
in flux-form momentum pkg. => change results of few test-exp. |
370 |
|
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
371 |
|
lab_sea, natl_box & plume_on_slope |
372 |
|
|
373 |
|
checkpoint48 |
374 |
|
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
375 |
|
|
376 |
|
checkpoint47j_post |
377 |
|
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
378 |
|
o moved adexch from forward_step to addummy_in_stepping |
379 |
|
o added exch in ctrl_map_... |
380 |
|
o aveFreq.=0. at end of cost_final to avoid overwrite in |
381 |
|
reverse checkpointing loop |
382 |
|
o Yet more changes in gmredi: |
383 |
|
* adgmredi_calc_tensor |
384 |
|
avoiding all recomputation of gmredi_slope_limit |
385 |
|
* adgmredi_x/y/rtransport |
386 |
|
added flag for excessive storing to avoid recomp. of |
387 |
|
u/v/rtans, dTdx/y/z |
388 |
|
-> this is not really necessary and very memory-consuming |
389 |
|
* adgmredi_slope_psi: |
390 |
|
consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
391 |
|
* gmredi_slope_limit |
392 |
|
re-activated full calculation of taperfct for case 'ac02' |
393 |
|
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
394 |
|
|
395 |
|
checkpoint47i_post |
396 |
|
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
397 |
|
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
398 |
|
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
399 |
|
o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
400 |
|
o gmredi: fix few bugs. |
401 |
|
|
402 |
|
checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
403 |
|
This will be a good checkpoint to plug into the ecco-branch. |
404 |
|
o few modif.'s to get latest version adjointed |
405 |
|
(mainly kick out code in ini_linear_phisurf) |
406 |
|
o modif's to run adjoint with exactConserv |
407 |
|
o case GM_BOLUS_ADVEC should be cleaned |
408 |
|
S/R gmredi_slope_psi should be cleaned |
409 |
|
o verification/carbon now has exactConserv=.TRUE. |
410 |
|
|
411 |
|
checkpoint47g_post |
412 |
|
o time-average AIM output: becomes independent from statvars time-average |
413 |
|
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
414 |
|
o After TAF bug fix: |
415 |
|
Tested adjoint of gmredi package. |
416 |
|
Tests were done with checkpoint47 rather than with latest |
417 |
|
checkpoint47f_post since the latter is broken for the adjoint |
418 |
|
verification/carbon/ contains both ADM and TLM gradient checks. |
419 |
|
Here they are, before they get changed/lost/stolen. |
420 |
|
Mostly modif.'s to fix numerical sensitivities. |
421 |
|
Gradient checks OK for |
422 |
|
- GM_taper_scheme: |
423 |
|
* clipping |
424 |
|
* ac02 |
425 |
|
* linear |
426 |
|
* glw91 |
427 |
|
* dm95 |
428 |
|
* ldd97 |
429 |
|
- GMREDI_OPTIONS: |
430 |
|
* GM_VISBECK_VARIABLE_K |
431 |
|
* GM_NON_UNITY_DIAGONAL |
432 |
|
* GM_EXTRA_DIAGONAL |
433 |
|
* GM_BOLUS_ADVEC |
434 |
|
in conjunction with data.gmredi parameters to be checked in |
435 |
|
in a few minutes under verification/carbon/code/ |
436 |
|
|
437 |
|
checkpoint47f_post |
438 |
|
Merging from release1_p10: |
439 |
|
o modifications for using pkg/exf with pkg/seaice |
440 |
|
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
441 |
|
and SEAICE_EXTERNAL_FLUXES |
442 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
443 |
|
EXF_NO_BULK_COMPUTATIONS |
444 |
|
- usage examples are Experiments 8 and 9 in |
445 |
|
verification/lab_sea/README |
446 |
|
- verification/lab_sea default experiment now uses |
447 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
448 |
|
|
449 |
|
checkpoint47e_post |
450 |
|
o created a tag prior to creating a branch |
451 |
|
|
452 |
|
checkpoint47d_post |
453 |
|
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
454 |
|
at the bottom boundary had an erroneous half slip boundary condition |
455 |
|
o added bottom drag and no slip boundary condition capabilities to |
456 |
|
oceanic pressure coordinates code |
457 |
|
o added new verification experiment global_ocean_pressure, this experiment is |
458 |
|
also described in the tutorial section of the manual |
459 |
|
checkpoint47d_pre |
460 |
|
|
461 |
|
checkpoint47c_post |
462 |
|
o Added a verification experiment for a global cubed-sphere ocean run |
463 |
|
- verification/global_ocean.cubed32x32x30 |
464 |
|
- uses pkg/therm_seaice and pkg/bulk_forcing |
465 |
|
|
466 |
|
o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
467 |
|
o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
468 |
|
when using P-coordinate; only implemented for atmospheric config. |
469 |
|
o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
470 |
|
NOTES: requires option NONLIN_FRSURF to be "#define". |
471 |
|
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
472 |
|
|
473 |
|
checkpoint47b_post |
474 |
|
Merging from release1_p9: |
475 |
|
o pkg/seaice |
476 |
|
- removed GOTO's and added taf directives |
477 |
|
- double precision constants to reduce the g77 (Linux) |
478 |
|
to F77 (SGI) differences reported in release1_p8 |
479 |
|
o tools/genmake |
480 |
|
- added SGI options |
481 |
|
o verification/testscript |
482 |
|
- updated to that of checkpoint47a_post |
483 |
|
o verification/global_ocean.90x40x15/input/eedata |
484 |
|
- modified for SGI f77 compatibility |
485 |
|
o verification/lab_sea |
486 |
|
- added description of sea-ice model |
487 |
|
- added missing matlab routines |
488 |
|
- added test of thermodynamics parallelization |
489 |
|
|
490 |
|
checkpoint47a_post |
491 |
o new pkg: aim_v23 |
o new pkg: aim_v23 |
492 |
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
493 |
for now, keep the same surface forcing as before. |
for now, keep the same surface forcing as before. |
496 |
- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
497 |
o add diagnostic of surface correction term in monitor output |
o add diagnostic of surface correction term in monitor output |
498 |
|
|
499 |
|
o bulk_force and therm_seaice |
500 |
|
- Two packages: bulk_force (Bulk forcing) |
501 |
|
and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
502 |
|
- Earlier integration from Stephaine Dutkiewicz |
503 |
|
and Patrick Heimbach. |
504 |
|
- Two ifdef statements for compile time, |
505 |
|
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
506 |
|
|
507 |
checkpoint47 |
checkpoint47 |
508 |
differentiable version of checkpoint46n_post |
differentiable version of checkpoint46n_post |
509 |
o bug fix in quasihydrostaticterms |
o bug fix in quasihydrostaticterms |