4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o added verification/lab_sea/input.salt_plume |
8 |
|
o pkg/salt_plume: clean up salt_plume_frac.F to |
9 |
|
remove redundancy in PlumeMethod 1 and 4 |
10 |
|
o pkg/kpp: added saltplume diagnostics |
11 |
|
o pkg/obcs and pkg/seaice: |
12 |
|
- do not set uice and vice to zero when OB*icefile are unspecified |
13 |
|
- OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default |
14 |
|
- moved seaice tracer obcs after call to seaice_growth |
15 |
|
o pkg/salt_plume: added various options for salt plume depth |
16 |
|
criterion and for vertical distribution of the salt |
17 |
|
|
18 |
|
checkpoint59l |
19 |
|
o pkg/ptracers: new version of ptracers pickup: |
20 |
|
read meta file and write only fields which are needed to restart. |
21 |
|
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
22 |
|
o pkg/seaice: |
23 |
|
- add timescale for melting due to warm mixed layer as a means of |
24 |
|
setting SEAICE_availHeatFrac more conveniently |
25 |
|
- add a CPP-flag/runtime parameter check for flooding algorithm |
26 |
|
- reformulated availHeat in seaice_growth.F to be independent of AREA |
27 |
|
o change units attribute of EmPmR netcdf variables to kg/m^2/s to reflect recent |
28 |
|
unit changes |
29 |
|
o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint |
30 |
|
o cg2d.F: add 3 compiler directives that speed up this routine by 30% on a NEC |
31 |
|
SX vector computer. |
32 |
|
o pkg/seaice: |
33 |
|
- removed SEAICE_FFIELDS.h and seaice_get_forcing.F |
34 |
|
seaice forcing fields can now be read only through pkg/exf |
35 |
|
- removed some unused halos |
36 |
|
o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP |
37 |
|
o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
38 |
|
or U/VICE from U/VWIND before computing U/VSTRESS |
39 |
|
|
40 |
|
checkpoint59k |
41 |
|
o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
42 |
|
dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
43 |
|
o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
44 |
|
all experiments pass when compile with un-initialised var. checking option. |
45 |
|
o added pkg/salt_plume |
46 |
|
o script to test restart (for now, in MITgcm_contrib/jmc_script) |
47 |
|
o pkg/seaice: new read/write pickup version. |
48 |
|
read meta file and write only fields which are needed to restart. |
49 |
|
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
50 |
|
o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates) |
51 |
|
o lab_sea.hb87: modify the domain & update output.hb87.txt : |
52 |
|
lat-long grid & no-slip BC in seaice-dynamics produce different sigma12 |
53 |
|
at j=1 & j=Ny+1 : this case is not treated correctly in the restart |
54 |
|
process. Fixed here by closing the domain at the Northern boundary. |
55 |
|
o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD. |
56 |
|
o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing |
57 |
|
a set of consecutive levels in/from a 3-D array. |
58 |
|
o pkg/ptracers: |
59 |
|
use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
60 |
|
to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
61 |
|
|
62 |
|
checkpoint59j |
63 |
|
o in pkgs: dic, obcs, offline, rbcs: |
64 |
|
standard way to compute coeff. for time interpolation between 2 time reccords |
65 |
|
which retains full precision (& make results less dependent on compiler). |
66 |
|
update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo. |
67 |
|
o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those |
68 |
|
packages instead of reading ice cover and wind speed separately |
69 |
|
o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h |
70 |
|
(keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad |
71 |
|
to allow to compile customized code before the update) |
72 |
|
o cleaning-up: |
73 |
|
- fix CPP instruction syntax in pkg/obcs |
74 |
|
- replace (some) call to MDSIO S/R with call to RW interface S/R ; and |
75 |
|
add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio) |
76 |
|
- fix some threads issue in IO parts. |
77 |
|
o pkg/dic: |
78 |
|
- add tons of "_d 0" (--> much better testreports !) |
79 |
|
and then update outputs of tutorial_global_oce_biogeo |
80 |
|
o pkg/mom_fluxform: |
81 |
|
add a special version of momentum advection intended to conserve momentum |
82 |
|
next to a bathymetry step or a coastline edge. (default = off = #undef) |
83 |
|
o new read/write pickup version: |
84 |
|
- for now, only implemented for main (mdsio) pickup file. |
85 |
|
- write out only what is needed to restart; merge pickup_nh , pickup_ph |
86 |
|
and main pickup together. |
87 |
|
- read meta file; read only what is needed to restart; stop if a field |
88 |
|
is missing (if pickupStrictlyMatch=T, = the default) or try to restart |
89 |
|
if it make sense (even if the restart is not perfect). |
90 |
|
- if no meta file, assume that pickup to read corresponds exactly to |
91 |
|
a pickup that would currently be written. |
92 |
|
- read pickup written in the old format (until checkpoint59i) if it |
93 |
|
recognizes an old meta file (no field-list). |
94 |
|
- add a meta file in exp. which starts from a pickup: 2 cases: |
95 |
|
a) minimal meta file (with just file precision) + pickupStrictlyMatch=F |
96 |
|
e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta |
97 |
|
b) a meta file describing the content of the associated pickup file |
98 |
|
e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta |
99 |
|
o pkg/mdsio & pkg/rw: |
100 |
|
- new routine to read a meta file ; new set of routine to read |
101 |
|
Multiple-fields file (with meta file). |
102 |
|
o added open boundary conditions capability for seaice |
103 |
|
HSNOW, HSALT, UICE, and VICE |
104 |
|
|
105 |
|
checkpoint59i |
106 |
|
o adjoint: |
107 |
|
* fix multiDimAdvection adjoint |
108 |
|
(partial recomputation problem by TAF for fVerT(:,:,kDown) |
109 |
|
and comlev1 size definition (maxpass vs. max. number of tracers) |
110 |
|
* verification/global_ocean.90x45x15 adjoint now tests |
111 |
|
NLFS and multiDimAdvection using DST3 (=30) |
112 |
|
* verification/lab_sea now tests multiDimAdvection using DST3 (=30) |
113 |
|
o pkg/kpp: add "_d 0" to real constant (if missing); |
114 |
|
update output of exp: natl_box (10.digits); vermix (std, 7.digits) |
115 |
|
and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits). |
116 |
|
o prepare for "clever pickup" implementation: add new header file "RESTART.h" |
117 |
|
for internal parameters related to restart process (formerly from PARAMS.h) |
118 |
|
and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2. |
119 |
|
o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed |
120 |
|
as argument. (only atm2d & obcs write_pickup have not yet been updated) |
121 |
|
o pkg/monitor: |
122 |
|
- use GLOBAL_SUM_TILE instead of _GLOBAL_SUM |
123 |
|
- fix mon_stats_rs (statistics over the full domain, even where field is zero) |
124 |
|
- account for deep Atmosphere factor and density factor (anelastic) |
125 |
o added open boundary conditions capability for seaice HEFF and AREA |
o added open boundary conditions capability for seaice HEFF and AREA |
126 |
o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
127 |
thermodynamics |
thermodynamics |
129 |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
130 |
so that now the conservative form is tested |
so that now the conservative form is tested |
131 |
- add a few comments |
- add a few comments |
132 |
o add missing cvs $Header$ or $Name$ in eesupp/*, pkg/* & verification/code* |
o add missing cvs Header: or Name: in eesupp/*, pkg/* & verification/code* |
133 |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
134 |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
135 |
multidim-advection, for scheme 2 they are not filled) and transports, |
multidim-advection, for scheme 2 they are not filled) and transports, |
136 |
thermodynamic growth rates |
thermodynamic growth rates |
137 |
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but |
o change units of EmPmR (inside the code, + within coupling interface) |
138 |
leave input file unchanged. Affects results @ truncation level (cg2d match) |
from m/s to kg/m2/s (mass flux) but leave input file unchanged. |
139 |
and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), |
Affects results @ truncation level (cg2d match) and update output of |
140 |
|
experiments: lab_sea(6), global_ocean.90x40x15(10), |
141 |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
142 |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
143 |
|
Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
144 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
145 |
|
|
146 |
checkpoint59h |
checkpoint59h |