4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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|
7 |
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o fix mnc-pickup/restart for ptracers |
8 |
|
o new code to compute profile cost |
9 |
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by Gael Forget |
10 |
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(modifs in ecco, ctrl, autodiff) |
11 |
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|
12 |
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checkpoint58c_post |
13 |
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o adjoint: finish NLFS adjoint and provide reference output in |
14 |
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verification/global_ocean.90x40x15/results_ad_nlfs |
15 |
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o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the |
16 |
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documentation of CICE. Turn on by defining SEAICE_ALLOW_EVP in |
17 |
|
SEAICE_OPTIONS.h and SEAICEuseEVP=.true. in data.seaice. Works only |
18 |
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with SEAICE_CGRID defined. |
19 |
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o move calendarDumps from "data" to "data.cal" and clean-up the code |
20 |
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with a simple call to pkg/cal S/R: CAL_TIME2WRITE |
21 |
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o add useEXF & useCAL flags (for now, set in hard-coded way) |
22 |
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o add S/R to compute NH-metrics terms & Coriolis f' in vertical momentum |
23 |
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(were missing in NH mode, and wrong in quasihydrostatic mode). |
24 |
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waiting for Chris updated version of calc_gw to add those CALLs. |
25 |
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o fix bug in quasihydrostatic S/R ; |
26 |
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add a test for this option: global_ocean.90x40x15.qshyd |
27 |
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o new S/R "SET_PARMS": set parameters that might depend on the use of some pkgs. |
28 |
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(called from INITIALISE_FIXED, after INI_PARMS & PACKAGES_READPARAMS) |
29 |
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o add on/off flag useOffLine for package OFFLINE |
30 |
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o seaice: |
31 |
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- modify advection so that it works also on the C-grid |
32 |
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- extend loop ranges in seaice_lsr and seaice_dynsolver; fixes |
33 |
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problem in multi-tile runs with C-grid |
34 |
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- add flags for clipping ice velocities and/or masking solver forcing |
35 |
|
- fix drag (ocean on ice) formulation and a bug that caused noise in the |
36 |
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C-grid solver |
37 |
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- added a few comments to seaice_diffusion.F |
38 |
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- separate C-grid and B-grid versions more cleanly (UVM and seaiceMaskU/V |
39 |
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are now exclusive) |
40 |
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- add a new ocean-ice stress coupling method (Hibler and Bryan, 1987) which |
41 |
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required re-ordering the code a little: |
42 |
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+ make DAIRN global variable (defined in SEAICE) |
43 |
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+ move computation of the viscosities eta and zeta into a new separate |
44 |
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routine (because I need to recompute them in seaice_ocean_stress.F) |
45 |
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|
46 |
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checkpoint58b_post |
47 |
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o AIM+thSIce: fix sign of Short-Wave through the Ice ; |
48 |
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update output.txt of exp. aim.5l_cs.thSI |
49 |
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o various mnc cleanups and improvements: |
50 |
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+ shrink lookup tables by factor of ~4 |
51 |
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+ better error reporting when running out of lookup space |
52 |
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+ able to handle longer path/file names (up to 500 chars) |
53 |
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o adjoint: |
54 |
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- Another overhaul of store dirs. for NLFS to eliminate "hidden" recomputations. |
55 |
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- TBD: "hidden" mom_vecinv recomp. in dynamics |
56 |
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o change forcing_In_AB to affects both T,S forcing and Momentum forcing |
57 |
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(allow to differentiate between forcing components using new integer flags: |
58 |
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momForcingOutAB=1/0 & tracForcingOutAB=1/0) |
59 |
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and add new flag to put Dissipation tendency out of Adams-Bashforth. |
60 |
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o ecco |
61 |
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- enable trend removal from SSH anomaly obs. |
62 |
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o adjoint |
63 |
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- a fix for PmEpR when #undef EXACT_CONSERV |
64 |
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- fix of "hidden" recomp. in thermodynamics (no TAF warnings) |
65 |
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- try to fix "hidden" recomp. in forward_step for NLFS |
66 |
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(NLFS seems broken sometimes after I checked it in) |
67 |
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o seaice: |
68 |
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- add c-grid version of the dynamic solver: |
69 |
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+ three new routines that are the c-grid substitute lsr, dynsolver |
70 |
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and ostres |
71 |
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+ put a few fields that were local to dynsolver into global common |
72 |
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blocks, so that I can move the computation of stresses etc into |
73 |
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seaice_lsr (saves coding but may break the adjoint). |
74 |
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- replace more hardwired parameters by runtime parameters |
75 |
|
- add ice masks that mask the rhs of the implicit solvers where there |
76 |
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is no ice (commented out in seaice_dynsolver, because i am not sure |
77 |
|
if this works properly), eventually this should replace the clipping |
78 |
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of ice velocities in seaice_dynsolver to +/-40cm/s. |
79 |
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o remove the BUILD_INFO.h include from CPP_EEOPTIONS.h and explicitly |
80 |
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include it only where its needed |
81 |
|
o move balancing of fluxes before the call of external_forcing_surf |
82 |
|
o seaice: |
83 |
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- correct units of turning angles (now they are really in degrees) |
84 |
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- move computation of GWATX/Y out of main routine into dynsolver |
85 |
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- initialize GWATX/Y in seaice_init |
86 |
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o Apply mask on Fresh-Water flux (needed for SSH forcing). |
87 |
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update output.txt of exp. global_ocean_ebm & cpl_aim+ocn (affects cg2d residual) |
88 |
|
o seaice: add runtime flags for turning angles (default to zero) |
89 |
|
o Adding runtime parameter to exf/, ctrl/, to remove on-the-fly global mean |
90 |
|
and trend from exf forcing and ctrl control adjustments |
91 |
|
o fix variable aliasing in gad_calc_rhs that cannot be handled by TAF |
92 |
|
(since checkpoint57x_post) |
93 |
|
o change the default rotation period to 86164.s = the Earth rotation |
94 |
|
o 1rst implementation of Implicit IGW using the 3-D solver (use3Dsolver=T) |
95 |
|
and based on a reference stratification. Tested within hs94.cs-32x32x5. |
96 |
|
o seaice advection: add code for choosing between the default (2nd order |
97 |
|
central differences) and multiDim advection schemes provided by |
98 |
|
pkg/generic_advdiff |
99 |
|
o seaice: |
100 |
|
- removed all references to SEAICE_GRID.h fields from |
101 |
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dynsolver, advect, diffus, lsr, without changing the results of lab_sea |
102 |
|
(cubed-sphere configuration will change a little) |
103 |
|
- grid computations in seaice_init are obsolete now. |
104 |
|
- cleaned up code a little so that is easier to read (hopefully). |
105 |
|
- added new (better?) discretizations of default advection and diffusion |
106 |
|
(turn on with SEAICEuseFluxForm) |
107 |
|
- replace 1 in 3d global fields by kSurface in growth.F |
108 |
|
|
109 |
|
checkpoint58a_post |
110 |
|
o seaice: |
111 |
|
- bug fix in advect.F |
112 |
|
o shelfice: |
113 |
|
- separate shelfice load anomaly from pload (breaks with time |
114 |
|
dependent forcing), => introduce constant field shelficeLoadAnomaly. |
115 |
|
Its default is 0., but it may be computed more cleverly from (unknown) |
116 |
|
t- and s-profiles (tRef, sRef) and actual EOS. For now this has to be |
117 |
|
done offline. A good approximation of the pressure load anomaly is |
118 |
|
necessary to avoid large initial adjustment processes underneath |
119 |
|
deep-reaching shelfice. |
120 |
|
- small fix in ISOMIP shelfice_thermodynamics |
121 |
|
- add more sophisticated thermodynamics of Hellmer (1989), this is |
122 |
|
now the default |
123 |
|
- give a few constants more intuitive names |
124 |
|
o add code to balance EmPmP and Qnet at the end of do_ocean_physics. Useful |
125 |
|
if bulk formulae are used in long integration (especially EmPmR). Turn |
126 |
|
on with balanceEmPmR = .true. or balanceQnet = .true. in data, PARM01 |
127 |
|
if balancePrintMean, the imbalance that is substracted is printed to |
128 |
|
STDOUT. |
129 |
|
o fix bug (typo) in obcs_apply_eta.F |
130 |
|
o add a new package shelfice which enables us to model the circulation |
131 |
|
underneath shelf-ice with draughts of hundreds of meters. |
132 |
|
- works |
133 |
|
- to do: + include improved thermodynamics |
134 |
|
+ check whether kSurfC (from model/inc/SURFACE.h) can be used |
135 |
|
instead of new field kTopC |
136 |
|
+ can we use topoFile, Ro_surf and existing code in ini_depth.F |
137 |
|
instead of new field R_shelfIce and new code in ini_depth.F |
138 |
|
and ini_mask_etc.F? |
139 |
|
+ adjust vertical mixing schemes? |
140 |
|
o seaice pkg: |
141 |
|
- add a cpp-flag to include a simple formula for a salinity dependent |
142 |
|
freezing point of sea water at the surface |
143 |
|
- change the contents of SEAICE_TEST_ICE_STRESS_1 so that zonal and |
144 |
|
meridional stresses are now different (and hopefully correct) |
145 |
|
o AIM pkg: change threshold on large-scale condensation to conserve Heat. |
146 |
|
update results of aim.5l_LatLon test ; fix title & units of AIM diagnostics |
147 |
|
and change 3 diagnostics names (OSR,OSRCLR,KM -> TSR,TSRCLR,DRAG) |
148 |
|
o pkg/diagnostics: add options and parameters for regional-statistics |
149 |
|
diagnostics ; define regions by reading a region-mask from a file |
150 |
|
(might add other options later) |
151 |
|
o pkg/bulk_force: |
152 |
|
- add option and parameters to use AIM surface-flux formulae. |
153 |
|
- Change loading part: S/R BULKF_FIELDS_LOAD only take care of bulkf_fields ; |
154 |
|
others forcing fields (defined in PARM05, parameter file "data") are loaded |
155 |
|
from S/R EXTERNAL_FIELDS_LOAD, as usually (with useBulkforce = T or F). |
156 |
|
- initialise all bulkf_fields in bulkf_init.F ; do in-lining of exf_bulkcdn.F |
157 |
|
- use the right EXCH call for uwind,vwind (to work on CS-grid). |
158 |
|
- re-arrange header files (move parameters from BULKF.h to BULKF_PARAMS.h) |
159 |
|
and parameters (note: calcWindStress replaces .NOT.readwindstress). |
160 |
|
- cleaner interface with pkg/thSIce (new S/R THSICE_GET_PRECIP). |
161 |
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|
162 |
|
checkpoint58 |
163 |
|
o add "--embed-source" option to genmake2 which, when the supporting |
164 |
|
tools can be compiled (as determined by genmake2) will turn on the |
165 |
|
embed_files package which then embeds the entire MITgcm source code |
166 |
|
(*.[fFhc] + Makefile) used for the build within the executable |
167 |
|
- requested by CNH but off by default |
168 |
|
- adds a paltry <9MB to the mitgcmuv executable in most cases |
169 |
|
- only writes the output when useEMBEDSRC in eedata is true |
170 |
|
o clean up 3-dim. relaxation codes: |
171 |
|
* Fix I/O inconsistency in pkg/rbcs: replace precFloat32 by readBinaryPrec |
172 |
|
* Remove 3-dim. relaxation code from pkg/exf (now use only pkg/rbcs) |
173 |
|
* Thanks to Tom Haine for testing! |
174 |
|
|
175 |
|
checkpoint57z_post |
176 |
|
o make CG3D solver compatible with Free-surface at k > 1 (p-coordinate): |
177 |
|
affects output (@ truncation level) of exp. plume_on_slope ; updated. |
178 |
|
o fix the pickup behavior for obcs in combination with ptracers |
179 |
|
o fix a bug in ptracers_external_fields_load |
180 |
|
o no AB-2 at the first iteration for Gw (consistent with Gu,Gv,Gt,Gs ...) |
181 |
|
affects results of NH experiments (but all our NH tests have Gw[it=1]==0 !!) |
182 |
|
o transfered surface NH pressure to eta field (if exactConserv). |
183 |
|
o gmredi: fix bugs in slope tapering ldd97 (depthZ had the wrong sign) |
184 |
|
and update lab_sea output.txt file. |
185 |
|
o completing 3-dim. relaxation code: additional term |
186 |
|
1/tau*( theta(i,j,k) - thetaStar(i,j,k) ) |
187 |
|
in S/R EXTERNAL_FORCING_T (file external_forcing.F) |
188 |
|
* At compile time, in "EXF_OPTIONS.h" set |
189 |
|
#define ALLOW_CLIMTEMP_RELAXATION |
190 |
|
#define ALLOW_CLIMSALT_RELAXATION |
191 |
|
* At runtime in "data", under &PARM03 set (e.g., units in seconds) |
192 |
|
tauThetaClimRelax3Dim = 15552000.0, |
193 |
|
tauSaltClimRelax3Dim = 15552000.0, |
194 |
|
* 3 cases: |
195 |
|
1) Use a constant-in-time 3-dim. field |
196 |
|
2) Provide 12 3-dim. fields corresponding to Jan., ... , Dec. |
197 |
|
3) Real-time relax. to time-evolving prescribed field |
198 |
|
o Adding Laplacian-type smoothness constraint on |
199 |
|
initial and boundary (forcing) controls (ic, bc) |
200 |
|
* enable at compile-time via |
201 |
|
ALLOW_SMOOTH_IC_COST_CONTRIBUTION, ALLOW_SMOOTH_BC_COST_CONTRIBUTION |
202 |
|
* enable at run-time via mult_smooth_ic = 1, mult_smooth_bc = 1 |
203 |
|
* Absolute scale somewhat unclear so far |
204 |
|
* no area weighting was included since no other cost term does so far |
205 |
|
|
206 |
|
checkpoint57y_post |
207 |
|
First step for a NLFS adjoint |
208 |
|
o initially suppress rStar (new flag DISABLE_RSTAR_CODE) |
209 |
|
o new init. routines for calc_r_star, calc_surf_dr |
210 |
|
o still need to deal with ini_masks_etc |
211 |
|
o testreport seemed happy |
212 |
|
checkpoint57y_pre |
213 |
|
|
214 |
|
o obcs: always reset wVel & eta (to zero or prescribe it) at the OBs. |
215 |
|
o add new package rbcs (for relaxing ptracers at boundaries/depth/surface etc) |
216 |
|
o add new offset feature to offline pkg (plus minor cleanup) |
217 |
|
o cfc fixes for final year of integration |
218 |
|
o clean up GCHEM_OPTIONS.h/DIC_OPTIONS.h (all options should |
219 |
|
be in GCHEM_OPTIONS). |
220 |
|
|
221 |
|
checkpoint57x_post |
222 |
|
o fix testreport Pb in multiple test experiment. |
223 |
|
o cleanup our namelist syntax in verification: |
224 |
|
- make it more F95 standards compliant (some work still needed) |
225 |
|
- allows the vast majority of our tests to work with gfortran |
226 |
|
o Non-Hydrostatic: |
227 |
|
- put all NH variables (formerly in DYNVARS.h & GW.h) in NH_VARS.h |
228 |
|
- fix exchange calls for CS-grid using the new EXCH_S3D_RL. |
229 |
|
o Allow to apply AB on T,S rather than on AB(gT,gS): |
230 |
|
- implemented within #ifdef ALLOW_ADAMSBASHFORTH_3 |
231 |
|
- use the same arrays (gtNm,gsNm) to hold tracer field at previous |
232 |
|
time-steps (if AB(T,S)) and tendencies (if AB(gT,gS)). |
233 |
|
- need a "clever" read_pickup to restart from the other AB formulation |
234 |
|
o move local commom bloc /GlobalLo/ (used for singleCpuIO) in EESUPPORT.h |
235 |
|
o remove some unused variables (reduces number of compiler warnings) |
236 |
|
o adjoint |
237 |
|
* Disable useVariableViscosity for adjoint for time being |
238 |
|
(there are a number of extensive recomputations) |
239 |
|
* Initialize certain variables needed for adjoint |
240 |
|
|
241 |
|
checkpoint57w_post |
242 |
|
o pkg/mdsio: use MAX_LEN_FNAM (instead of hard coded 80) for file-names |
243 |
|
fix the singleCpuIO RS version of MDSWRITEFIELD |
244 |
|
and add a WARNING if using globalFiles=T with multi-processors. |
245 |
|
o write grid-file(s) in only one format (MDS or MNC): default=MNC (if |
246 |
|
using MNC); can force MDS output by setting writegrid_mnc=F in data.mnc |
247 |
|
o tracer advection scheme: |
248 |
|
add DST-2 (=Lax-Wendroff) & 1rst order upwind schemes (the way to get |
249 |
|
those 2 schemes before, changing GAD_FLUX_LIMITER.h + to recompile, |
250 |
|
was not very convenient). |
251 |
|
add implicit version for DST-3 & DST3_Flux_Limit vertical advection; |
252 |
|
(further tests needed for the implicit DST & Flux-Limiter schemes). |
253 |
|
o PTRACERS: added namelist parameter PTRACERS_ref in analogy to tRef |
254 |
|
and sRef for convenience, handy, when you want to initialize |
255 |
|
ptracers in a large domain with a constant non-zero value. Also, |
256 |
|
untangle ptracers_init.F a little. |
257 |
|
|
258 |
|
checkpoint57v_post |
259 |
|
o change dome exp. to use variable viscosity in side-drag terms. |
260 |
|
o remove all the files from the cfc_offline test since they are now |
261 |
|
incorporated into tutorial_cfc_offline which has been producing |
262 |
|
identical results for a few days of testing |
263 |
|
o add new parameter: sideDragFactor to enable half-slip-side BC |
264 |
|
and change side-drag S/R to use viscosity from mom_calc_visc |
265 |
|
(can switch back by setting sideDragFactor=0.); affects results at |
266 |
|
truncation level; regenerate output for exp.: global_ocean.cs32x10(x3), |
267 |
|
global_ocean_ebm, global_ocean_pressure, matrix_example & MLAdjust(x5). |
268 |
|
o vorticity & strain are now computed without masking, to account for |
269 |
|
no-slip-side BC in variable viscosity calculation ; mask is applied |
270 |
|
anyway later on, before computing advection/coriolis terms. |
271 |
|
o modify exp4 to test new obcs support for reading from external files |
272 |
|
and for passive tracers |
273 |
|
o fix behavior of ptracers_monitor when monitor output is written to a |
274 |
|
netcdf-file; still not independent of monitor.F (writes in the same |
275 |
|
file). |
276 |
|
o change default value of tRef (put a uniform, meaningful value for ocean |
277 |
|
& atmos) and initialize sRef (was missing, as Martin mentioned). |
278 |
|
o Redefine viscC?Leith*. Change the coefficients of Leith viscosity |
279 |
|
to be proportional to enstrophy dissipation length. Thus, |
280 |
|
viscC?leith?_new=pi*(viscC?leith?_old)^(1/3) |
281 |
|
This is now consistent with Smagorinsky and with the manual. |
282 |
|
|
283 |
|
checkpoint57u_post |
284 |
|
o OBCS and PTRACERS: add open boundary support for passive tracers |
285 |
|
- either use homogenous (pseudo) v.Neumann conditions or prescribe |
286 |
|
OB-values from file; this is not different from the way theta and salinity |
287 |
|
are treated |
288 |
|
- however, Orlanski-radiation conditions are not supported, and the model |
289 |
|
will stop if you use pTracers and Orlanski at the same time. |
290 |
|
- beefed up the rountine obcs_external_fields_load: now only those open |
291 |
|
boundary values are overwritten with values from files for which there |
292 |
|
are really files, otherwise the OB-fields remain untouched. This makes |
293 |
|
it possible to use different OBs at different ends of the domain (as |
294 |
|
with EXF) |
295 |
|
o reduce number of exch calls in shap_filt (s2). |
296 |
|
o CS-grid: fix divergence contribution to Leith viscosity. Affects (@ |
297 |
|
truncation level) 4/5 MLAdjust test results (11&12 digits match). |
298 |
|
|
299 |
|
checkpoint57t_post |
300 |
|
o test biharmonic viscosity + no-slip with exp: global_ocean.cs32x15.viscA4 |
301 |
|
o finish adding brackets (coriolis S/R, vecinv) in multi-terms sum to get |
302 |
|
same truncation, independent of the face number: affects affects several |
303 |
|
test. exp.: Update global_ocean.cs32x15 (+.thsice) & MLAdjust (all 5). |
304 |
|
o fix bug in mom_v_sidedrag (biharmonic viscosity was counted 2 times); |
305 |
|
note that biharmonic viscosity + no-slip was not tested in any experiment. |
306 |
|
o fix bug in non-linear free-surf side-drag ; generate new output for |
307 |
|
global_ocean.cs32x15(+.thsice) & global_ocean_pressure. |
308 |
|
o make mnc honor the writeBinaryPrec flag for most kinds of output |
309 |
|
o eesupp: split EEPARAMS into EESIZE/EEPARAMS and add a vector global sum |
310 |
|
o minor change in averaging W (mom_vi_?_vertshear.F) that affects truncation |
311 |
|
error; update output from global_ocean.cs32x15(+.thsice) & MLAdjust (all 5). |
312 |
|
o add brackets in multi-terms sum to get same truncation, independent of |
313 |
|
the face number (manage to get exactly same value of gU,gV at the cs-edge) |
314 |
|
affects several test. exp. Update global_ocean.cs32x15 (+.thsice). |
315 |
|
o Clean, new version of mom_calc_visc. Adds a new feature, viscAhRemax |
316 |
|
and viscA4Remax, which allow one to limit the minimum viscosity by specifying |
317 |
|
a maximum grid-scale Reynolds number. Also, changes all length calculations |
318 |
|
in the case of grid anisotropy to geometric mean of dx**2 and dy**2. |
319 |
|
Suggested values of viscosity parameters found in mom_calc_visc. |
320 |
|
Many new viscosity diagnostics available. |
321 |
|
|
322 |
|
checkpoint57s_post |
323 |
|
o Add clearing-house for viscosity calculations, mom_calc_visc and |
324 |
|
correct numerous bugs in LeithD and Smagorinsky discretizations. |
325 |
|
mom_calc_visc now allows for Smagorinsky, Leith and LeithD to be |
326 |
|
used simultaneously, and to be used in mom_vecinv and mom_fluxform. |
327 |
|
Mom_vecinv can be used with standard viscous calculation (mom_vi_hdissip.F) |
328 |
|
and with Strain-Tension viscous term calculation (mom_hdissip.F). |
329 |
|
The Strain-Tension form is now called with useStrainTensonVisc=.true. |
330 |
|
ViscAhStrain and viscAhTension are now retired. |
331 |
|
o diagnostics "VISCAHD" & "VISCA4D" replace "VISCAH" & "VISCA4". |
332 |
|
o In response to JMC's bug report, genmake2 now ignores any soft-links |
333 |
|
that it finds in the *current* directory when searching for files. |
334 |
|
Soft-links found in any other source directories will still work as |
335 |
|
they did before. |
336 |
|
o add HAVE_SETRLSTK define and useSETRLSTK flag (eedata) which calls |
337 |
|
a C routine to unlimit the stack size |
338 |
|
o mnc-ify pkg/aim snapshot vars |
339 |
|
o mnc-ify pkg/land as requested by Daniel |
340 |
|
o various changes to mnc including: |
341 |
|
- all files use the new "BASENAME[[.ITER].{t|f}NUM].nc" format |
342 |
|
- output can now be grouped so that all files within a group |
343 |
|
change the ITER portion of their names in lock-step together |
344 |
|
- can now read ("global") PER-FACE (in addition to PER-TILE) files |
345 |
|
and works with both EXCH1 and EXCH2 (but needs more testing) |
346 |
|
- writing works for all verification test cases w/ g77 on Linux |
347 |
|
|
348 |
|
checkpoint57r_post |
349 |
|
o make MNC variable initialization happen earlier |
350 |
|
o add diagnostics for (almost) each term of the momentum Eq. |
351 |
|
o remove SST,SSS,UVEL_k2,VVEL_k2 diagnostics. |
352 |
|
o move pkg timeave out of pkg-groups "oceanic" & "atmospheric" (pkg/pkg_groups) |
353 |
|
o remove MINIMAL_TAVE_OUTPUT option ; |
354 |
|
add "dumpInitAndLast" to replace "nodumps" (and MINIMAL_TAVE_OUTPUT). |
355 |
|
o move some basic S/R (used elsewhere in the code) from pkg/mdsio to eesupp/src |
356 |
|
allows to compile without pkg/mdsio (& test successfully hs94.1x64x5) |
357 |
|
o add MNC output for adjoint of EXF (adexf), SEAICE (adseaice) |
358 |
|
o add time-dependent SST, SSS control |
359 |
|
o cost terms in ecco/ modularized (new cost_generic.F) |
360 |
|
o cost_averages routines are modularized (new cost_averagesgeneric.F) |
361 |
|
o new infrastructure for seaice model vs. obs misfits in seaice/ |
362 |
|
* driver from the_main_loop.F is seaice_cost_driver.F |
363 |
|
* first term is AREA vs. SMR observation misfit (ALLOW_SEAICE_COST_SMR_AREA) |
364 |
|
* gradient check in Exp. 6a of natl_box_adjoint/ |
365 |
|
o natl_box_adjoint input_seaice for Lab. Sea now available online via wget |
366 |
|
(see README file) |
367 |
|
|
368 |
|
checkpoint57q_post |
369 |
|
o fix initialisation Pb in calc_gw (get NANs in exp5 with g77) |
370 |
|
o fix annoying months-old bug in mnc/mdsio output for seaice pkg |
371 |
|
- bug was reported by Jean-Michel and Ian Fenty |
372 |
|
o fix initialization Pb in AIM-Ocean coupled model (aim_sice2aim.F) |
373 |
|
update exp. cpl_aim+ocn output. |
374 |
|
o Implement 4-level checkpointing: AUTODIFF_4_LEVEL_CHECKPOINT |
375 |
|
Needed for high-res. runs with large global files |
376 |
|
to be able to limit tapelev size |
377 |
|
o Changed some tests for adjoint: |
378 |
|
* carbon/ now tests AUTODIFF_2_LEVEL_CHECKPOINT |
379 |
|
* natl_box_adjoint/code_bulk/ tests AUTODIFF_4_LEVEL_CHECKPOINT |
380 |
|
* global_ocean.90x40x15/ back to default 3-level checkpointing |
381 |
|
o Modifications to enable scripted COMMON to MODULE conversion |
382 |
|
* verification/OpenAD/code/ has necessary scripts and description; |
383 |
|
* converts, compiles and runs successfully; |
384 |
|
|
385 |
|
checkpoint57p_post |
386 |
|
o reading of delXfile & delYfile moved from ini_parms.F to ini_grid.F |
387 |
|
o move ${PKG}_MNC_INIT from ${PKG}_READ_PARAMS to ${PKG}_INIT_FIXED |
388 |
|
(already the case for some pkgs, including recent MNC_init, e.g. thsice) |
389 |
|
o call CALC_GW from DYNAMICS (instead of from FORWARD_STEP) |
390 |
|
o Dissipation & phiHyd gradient are always added to gU,gV in timestep.F |
391 |
|
(was already the case for dissipation with mom_vecinv, |
392 |
|
and also the case for grad.PhiHyd when staggered-timeStep) |
393 |
|
This will allow to put dissipation out-off the AB time-stepping. |
394 |
|
Unfortunately, affects truncation error. Update output of exp. that "fails" |
395 |
|
(cg2d matching number) and leave the others for later: front_relax(10), |
396 |
|
global_ocean_pressure(10),ideal_2D_oce(10),internal_wave(9),lab_sea(12), |
397 |
|
matrix_example(7!),natl_box(12),plume_on_slope(11),vermix(12x3,11x2). |
398 |
|
|
399 |
checkpoint57o_post |
checkpoint57o_post |
400 |
o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and |
o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and |
401 |
(2) its ready to be documented during the 20050801 DocFest |
(2) its ready to be documented during the 20050801 DocFest |