--- MITgcm/doc/tag-index 2007/09/05 01:55:26 1.868 +++ MITgcm/doc/tag-index 2007/10/21 18:56:16 1.896 @@ -1,9 +1,97 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.868 2007/09/05 01:55:26 jmc Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.896 2007/10/21 18:56:16 jmc Exp $ $Name: $ Notes on tags used in MITgcmUV ============================== +checkpoint59i +o adjoint: + * fix multiDimAdvection adjoint + (partial recomputation problem by TAF for fVerT(:,:,kDown) + and comlev1 size definition (maxpass vs. max. number of tracers) + * verification/global_ocean.90x45x15 adjoint now tests + NLFS and multiDimAdvection using DST3 (=30) + * verification/lab_sea now tests multiDimAdvection using DST3 (=30) +o pkg/kpp: add "_d 0" to real constant (if missing); + update output of exp: natl_box (10.digits); vermix (std, 7.digits) + and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits). +o prepare for "clever pickup" implementation: add new header file "RESTART.h" + for internal parameters related to restart process (formerly from PARAMS.h) + and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2. +o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed + as argument. (only atm2d & obcs write_pickup have not yet been updated) +o pkg/monitor: + - use GLOBAL_SUM_TILE instead of _GLOBAL_SUM + - fix mon_stats_rs (statistics over the full domain, even where field is zero) + - account for deep Atmosphere factor and density factor (anelastic) +o added open boundary conditions capability for seaice HEFF and AREA +o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) + thermodynamics + - requires a little reorganization, which affects the testreport results + of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, + so that now the conservative form is tested + - add a few comments +o add missing cvs Header: or Name: in eesupp/*, pkg/* & verification/code* +o add a little bit of code to gad_os7mp_adv_?.F to help vectorization +o add new diagnostics to seaice: advective, diffusive fluxes (only for + multidim-advection, for scheme 2 they are not filled) and transports, + thermodynamic growth rates +o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but + leave input file unchanged. Affects results @ truncation level (cg2d match) + and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), + global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) + + adjoint results: global_ocean_ebm(11) and lab_sea (12). + Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). + +checkpoint59h +o pkg/exf: + - improve vectorization by moving if-statement out of loops in + exf_mapfields, exf_radiation + - exf_bulkformulae.F: introduce 2D fields and vectorize code +o pkg/kpp: added the salt plume scheme (ALLOW_SALT_PLUME) to KPP package +o testreport: + - allow to test for Qnet & SeaIce monitor output; clean-up ALLOW_BULK_OFFLINE + monitor & update offline_exf_seaice exp. output. + - AD testing: pass/FAIL according to Grad. output accuracy (instead of Cost) +o pkg/seaice: + - bug fix in the evp solver: boundary conditions were affected be + masking of zMax/zMin (changes results) + - minor bug fix in boundary conditions in seaice_calc_strainrates + (changes results for no_slip) + - seaice_lsr.F: make interpolation of eta dependent on boundaries + - replace hardcoded lower limit for zeta (zMin) by runtime parameter + - add a test to lab_sea, that tests the Hibler and Bryan (1987) ocean + stress formulation and no-slip boundary conditions +o pkg/ptracers: Temporary fix for PTRACERS_useGMRedi & PTRACERS_useKPP + in gad_calc_rhs.F ; add few safety stops in initialisation phase. +o pkg/seaice: a first HSALT time stepping equation has been checked in +o pkg/seaice: replaced maskW with seaiceMaskU and maskS with seaiceMaskV + in seaice_lsr.F; this solves the pkg/seaice-pkg/obcs problem + without requiring DO-IF statements +o pkg/thsice: + use continuous power-law function for partition of energy between lateral + melting/freezing and thinning/thickening ; old code using step function + still available with #undef THSICE_FRACEN_POWERLAW + update output of exp: aim.5l_cs.thSI, global_ocean.cs32x15.icedyn & .thsice +o testreport: change AD testing : check against results/output_adm.txt + using same scripts as for forward test. + +checkpoint59g +o adjoint testing: in preparation for changing testreport: + - output format: cost and grad written on separated lines + - ad output results in directory "results" (instead of "results_ad") +o pkg/seaice: adding ice salinity HSALT as a prognostic variable +o pkg/seaice: changes for using pkg/seaice with pkg/obcs +o pkg/ecco: allow user defined cost function contributions +o testreport: + Allow to choose (per experiment) the list of tested output variables + and the main variable (used to issue a pass/FAIL ) ; + - for now, done by adding the specific list in file: [exp]/input/tr_checklist + - default is unchanged: >cg2d< , (T,S,U,V,5 tracers)_[min,max,mean,StD] ; + Also modify printing of summary: + a) ">" NN "<" indicates the "main" variable (used for pass/FAIL) + b) echo the list of tested variables in the individual summary.txt of + each experiment. o new S/R GLOBAL_SUM_TILE to compute global sum independently of number of threads and number of processes (with #define GLOBAL_SUM_SEND_RECV) (but still depend on the tile decompostion of the domain). @@ -262,7 +350,9 @@ ATMOSPHERIC_LOADING is #define). o pkg/kpp: replaced _KPP_RL with _RL o bug fixes for vertical diffusivity computations when both KPP and - 3D diffusivity arrays are used. + 3D diffusivity arrays are used; pkg/kpp/kpp_calc_diff_s & _t.F + are no longer updating the vertical diffusivity array + (passed as argument) but are (re-) setting those arrays. o pkg/seaice: fix bug in evp solver, while doing that - change (improve?) discretization of stress computations for both cgrid-lsr and evp solver