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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments |
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which simplifies the calls and passes the ifc check-bounds test |
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checkpoint55b_post |
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o add a 2D scalar, Z location, exchange_2 routine. |
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o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows |
| 12 |
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to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)] |
| 13 |
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affects advect_cs results (for the wrong reason): update output.txt |
| 14 |
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o use a more standard discretization for biharmonic viscosity ; |
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(original version still available with #define MOM_VI_ORIGINAL_VISCA4 ) |
| 16 |
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affects results of dome set-up: update output.txt |
| 17 |
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o fix gad_advection.F (CubedSphere part), back to version 1.23 |
| 18 |
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o fix bug in mom_vi_del2uv.F (CubedSphere part). |
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checkpoint55a_post |
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o merged code to |
| 22 |
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* prescribe/read time-dependent open boundaries |
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(works in conjunction with exf, cal) |
| 24 |
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* sponge layer code for open boundaries |
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* each boundary N/S/E/W now has its own CPP option |
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(healthy for the adjoint) |
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| 28 |
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checkpoint55 |
| 29 |
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o up-to-date adjoint of previous breaks |
| 30 |
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- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
| 31 |
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- global_ocean_ebm: adjoint still needs fix (TLM ok) |
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- global_ocean.90x40x15: extended GMREDI_OPTIONS.h |
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- carbon: * remove tr1-related adjoint verification |
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* add ptracer as control variable |
| 35 |
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o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
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(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
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checkpoint54f_post |
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o in verification/carbin/ remove experiment related to |
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ALLOW_PASSIVE_TRACER (array tr1 etc) |
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code_ad/ input_ad/ results_ad |
| 42 |
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o add two new packages |
| 44 |
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- ggl90, TKE-model of Gaspar et al. (1990), Blanke+Delecluse (1993) |
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+ subject to optimization (memory) |
| 46 |
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- opps, OPPS (ocean penetrative plume scheme) of Paluszkiewicz+Romea (1997) |
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+ subject to reordering (many GOTOs in the original code) |
| 48 |
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+ so far opps is called for every (i,j) point, and then operates in |
| 49 |
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the vertical; one may want to reorder the scheme in order operate in |
| 50 |
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horizontal slabs at the cost of (a lot of) memory, at least ten new 3D |
| 51 |
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fields) |
| 52 |
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o overhaul of IO so that we now have flags for MDSIO and/or MNC |
| 53 |
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- all verification tests compile and run with linux_ia32_g77 |
| 54 |
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- defaults are compatible with current input files--nothing |
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should change if you were not previously using MNC |
| 56 |
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- MNC output has been added in numerous places (eg. timeave) |
| 57 |
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but there are still a few writes not yet do-able with MNC |
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(this is in progress) |
| 59 |
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- flags now allow for either/or/both use of MDSIO and MNC and |
| 60 |
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documentation will soon follow |
| 61 |
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- numerous small formatting cleanups for ProTeX |
| 62 |
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o add version info (via BUILD_INFO.h) to MNC and stdout |
| 63 |
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| 64 |
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checkpoint54e_post |
| 65 |
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o add two new packages |
| 66 |
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- pp81 (Packanowski and Philander, 1981), Richardson number and |
| 67 |
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stratification dependent mixing |
| 68 |
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- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
| 69 |
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- these scheme operate in a similar manner as KPP (without ghat, of |
| 70 |
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course), however there is only one diffusivity that is used for both |
| 71 |
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temperature and salinity (and passive tracers)ç |
| 72 |
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o add offline package |
| 73 |
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o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
| 74 |
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provided by Stephanie Dutkiewicz |
| 75 |
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o genmake2: add ability to search for C compilers and cleanup test output |
| 76 |
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- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
| 77 |
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| 78 |
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checkpoint54d_post |
| 79 |
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o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
| 80 |
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o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
| 81 |
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leading to additional shift by 5 days each year of integration |
| 82 |
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(i.e. leading to considerable offset over the years) |
| 83 |
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o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep |
| 84 |
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o start with no AB and no initial filtering (staggerTimeStep): |
| 85 |
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change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5 |
| 86 |
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o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F |
| 87 |
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(external loading & cpl import/export stay in forward_step.F) |
| 88 |
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o update coupling interface to work with new staggerTimeStep |
| 89 |
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o change MDSIO ptracers_pickup. |
| 90 |
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o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F); |
| 91 |
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o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
| 92 |
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o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
| 93 |
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| 94 |
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checkpoint54c_post |
| 95 |
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
| 96 |
this affects (truncation error) output.txt of test-exp: |
this affects (truncation error) output.txt of test-exp: |
| 97 |
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
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