--- MITgcm/doc/tag-index	2006/06/14 16:09:00	1.677
+++ MITgcm/doc/tag-index	2006/07/08 00:29:20	1.696
@@ -1,9 +1,63 @@
-$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.677 2006/06/14 16:09:00 mlosch Exp $
+$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.696 2006/07/08 00:29:20 heimbach Exp $
 $Name:  $
 
     Notes on tags used in MITgcmUV
     ==============================
 
+o take bi,bj loops outside calc_gw to fix Pb with local array KappaRU,V
+o commit code to make SST/SSS weights spatially variable
+  (based on either variable in-situ or variable initial T/S weights)
+o pkg/ecco:
+  * commit code to relax deviations of xx_theta, xx_salt to 5*sigma,
+    now based on horizontally varying weights wthetaLev, wsaltLev
+  * cost_averagesflags now returns year indices in addition to day, month
+  * sflux balance is performed on annual basis 
+    (sflxumm, sfluxmm2, bal_sfluxmm)
+  * for SSH anomaly, separate more cleanly contrib from T/P, ERS, GFO,
+    including separate counting and multipliers
+
+checkpoint58k_post
+o testreport:
+ - always build in dir. "build" (if not there, mkdir build instead of building 
+   & running in input)
+ - run in dir run (if it exists), in build otherwise.
+ - call prepare_run (if input/prepare_run exists)
+ - run multi-threaded test (with new option: "-mth") if file input/eedata.mth exists.
+o pkg/exf modifications to interpolation and rotation routines for more
+   reasonable treatment of North Pole singularity: for tracers North Pole
+   value is set to northernmost zonal-mean value, for zonal velocity it is
+   set to zero, and for meridional velocity it is set to northernmost value.
+o pkg/exf/exf_check_range.F
+ - add tile index to diagnostics and move stop statement to the very 
+   end of the routine. 
+o pkg/diagnostics: (diagnostics_main_init.F)
+  define title of isomorphic variables according to the current config.
+o pkg/thsice with pkg/seaice dynamics:
+- fix domain of computation (interior only, required for exf) and do exchanges
+- seaice-dynamics forcing: add atmospheric and seaice loading to SSH gradient
+o towards a standard way of dealing with multi-threading in MONITOR
+  and ${PKG}_MONITOR (all except ptracers_monitor) subroutines.
+o Pass variable viscosities (vertical and horizontal, e.g., KPP or Leith) 
+   to W momentum equation in nonhydrostatic and quasihydrostatic runs.  
+o make exf_monitor & seaice_monitor independant of the main (dynamics) monitor.
+o pkg/seaice: fix SEAICEuseEVPpickup parameter (put it in a commom block)
+o generic_advdiff: DST advection S/R : use local copy of velocity to compute CFL
+   (problems ? with gradient check in bottom_ctrl_5x5 adjoint test)
+o tracer advection: 
+ - clean-up and simplify calc_common_factors.F
+ - make a local copy of velocity and pass it (as u,v,r_Trans) to DST tracer 
+   advection subroutine (but still not used within DST advection S/R)
+o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim)
+
+checkpoint58j_post
+o new driver S/R: LOAD_FIELDS_DRIVER to load external forcing fields
+  from file (collects calls previously in FORWARD_STEP)
+o move call to SEAICE_MODEL from FORWARD_STEP to DO_OCEANIC_PHYS
+o adjoint store dir. adjusted accordingly
+o genmake2
+  replace target "ad_taf" by $(EXE_AD) ; add $(EXE_AD) to the make CLEAN list.
+
+checkpoint58i_post
 o pkg/seaice: add parameter that allows to scale/turn off effect of seaice 
   on wind stress (SEAICEstressFactor defaults to 1.)
 o Total number of Timers is finite (<=40): comment out 2 non-essential one