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revision 1.393 by edhill, Tue Nov 23 21:25:24 2004 UTC revision 1.411 by jmc, Mon Dec 13 23:12:03 2004 UTC
# Line 2  $Header$ Line 2  $Header$
2    
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    o re-arrange diagnostics pkg initialisation:
6     - allow each package to extend the available diagnostics list
7     - add some checking and fix small problems (multi-threaded, ...)
8     - new S/R diagnostics_fill (replace fill_diagnostics):
9       look through the short list of active diag. (instead of the long list)
10       create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active
11    
12    checkpoint57a_post
13    o this set of changes restores TAMC compatibility
14      tested for global_ocean.90x40x15 adjoint on trough
15      (what a pain)
16    
17    checkpoint57a_pre
18    o some modifs in tools/build_options for sunos
19    o call ctrl_pack for ctrl at end for optimcycle=0
20    
21    checkpoint57
22    o add horizontal bi-harmonic viscosity for vertical velocity
23      - new parameter viscA4W (defaults to viscA4)
24      - affects only non-hydrostatic code
25      - to be done: no-slip lateral boundary conditions
26    o switch back to "sflux = sflux - runoff" in exf_getforcing.F
27    o implement Implicit Vertical advection for pTracers
28    o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k)
29      (implemented also for implicit vertical diffusion & advection)
30    o OBCS: extend application of tracer open boundary conditions
31      to a strip beyond the boundary of width Olx/Oly
32    o add call monitor to TAF set of required calls (flow directives)
33      and include in natl_box_adjoint
34    o untangle a few ifdefs related to cost, ctrl, autodiff
35      untangel a few ALLOW_ECCO_OPTIMIZATION
36    o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr)
37      (theta2, salt2 in ecco_cost_weights)
38    
39    checkpoint56c_post
40    o OBCS as control variables
41      - update ctrl_ad_diff.list, obcs_ad_diff.list
42      - remove balance of obcs controls from default
43      - fix index bug nobcs in ctrl_init
44      - fix dummy fields filen in ctrl_pack
45      - add dummy weights for obcs
46    o lsopt: comment out fort.94 output
47    o optim:
48      - remove unnecessary header files
49      - adjusted namelists
50      - add xerbla.F to Makefile
51    o exf:
52      - multiple modifications of exf_check_range
53      - unit change in exf_init_runoff from [m/year] to [m/s]
54    o mdsio:
55      - i/o-vector change debugLevel from debLevA to debLevB
56    
57    checkpoint56b_post
58    o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that
59      is called from DO_THE_MODEL_IO
60      - rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE
61      - introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq)
62      - clean up PTRACERS_WRITE_TIMEAVE a little
63    o add another verification experiment that tests both the cfc-pkg and
64      the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with
65      reactive tendencies treated inline with regular timestepping
66    o testreport previously did a lousy job of comparing small numbers, so
67      we (Ed and Martin) changed the  way the cut-off of 1.e-12 is
68      implemented in the little c-progam tmp_cmpnum.c which is embedded in
69      testreport.
70    o ptracers_monitor: bug fix for MPI
71    
72    checkpoint56a_post
73    o GCHEM: finish reorganizating the package
74      - forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency
75        (introduces another 3D-array for each passive tracer, but only if
76        GCHEM_SEPARATE_FORCING is undefined. For GCHEM_SEPARATE_FORCING
77        gchemTendency is not needed because the timestep is done separately)
78      - gchemTendency is added to gPtr in GCHEM_ADD_TENDENCY
79      - GCHEM is now---more or less cleanly---separate from PTRACERS
80      - to bo done: handling of surfaceForcingPtr that is needed for KPP not
81        so clear to me how that should be done in a general way.
82    o CFC: improve formatting of output in CFC_ATMOS
83    o PTRACERS:
84      - rename GCHEM_MONITOR to PTRACERS_MONITOR and call it from MONITOR, so
85        that ALL experiments with ptracers enable can be checked. This makes
86        GCHEM_MONITOR obsolete.
87      - include a runtime parameter PTRACERS_monitorFreq that defaults to
88        monitorFreq
89      - set default PTRACERS_write_mdsio to false if PTRACERS_write_mnc is true
90  o add PTRACERS (PTR0[1-5]) to testreport output  o add PTRACERS (PTR0[1-5]) to testreport output
91  o exf_check_range:  o exf_check_range:
92    * default changed to .TRUE.    * default changed to .TRUE.
# Line 25  o GCHEM: Line 109  o GCHEM:
109      be replaced by a 3D array that is computed before thermodynamics; for      be replaced by a 3D array that is computed before thermodynamics; for
110      this, the tracer ID iTracer had to be included into the parameter list      this, the tracer ID iTracer had to be included into the parameter list
111      of ptracers_forcing      of ptracers_forcing
112    - set up forward_step for a call to gchem_forcing, that will replace    - set up forward_step to call gchem_forcing, that will replace
113      gchem_forcing_int in ptracers_forcing      gchem_forcing_int in ptracers_forcing
114    - cleaning up    - cleaning up
115  o small cleaning of exch2: remove files that are also in eesupp/src  o small cleaning of exch2: remove files that are also in eesupp/src
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