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revision 1.293 by jmc, Fri May 14 16:31:58 2004 UTC revision 1.338 by edhill, Fri Jul 30 14:31:40 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    o genmake2: add ability to search for C compilers and cleanup test output
7      - fixes recent SX-6 problems and should help with others (eg. HP-UX)
8    
9    checkpoint54d_post
10    o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed
11    o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong,
12      leading to additional shift by 5 days each year of integration
13       (i.e. leading to considerable offset over the years)
14    o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep
15    o start with no AB and no initial filtering (staggerTimeStep):
16      change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5
17    o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F
18      (external loading & cpl import/export stay in forward_step.F)
19    o update coupling interface to work with new staggerTimeStep
20    o change MDSIO ptracers_pickup.
21    o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F);
22    o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*")
23    o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell)
24    
25    checkpoint54c_post
26    o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr
27      this affects (truncation error) output.txt of test-exp:
28       global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box
29    o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array)
30    o change Qnet to always be the net heat flux, (+upward).
31      affects (truncation error) output of natl_box exp.: updated
32    o define the max number of passive tracers in PTRACERS_SIZE.h
33    o start to test mnc routinely in exp0
34    o add sea-ice loading (sIceLoad) as a new forcing field.
35    
36    checkpoint54b_post
37    o add testreport "-j JOBS" option for parallel builds (tested and pretty
38       impressive on Altix and Opteron systems)
39    o diagnostics can now write NetCDF files through the mnc package
40    o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output
41    o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added
42    o staggerTimeStep & NLFS: rescale T & S surface tendencies.
43      affects (truncation error) output of lab_sea & natl_box exp.: updated
44    o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.)
45    
46    checkpoint54a_post
47    o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order).
48    o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.)
49    o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished)
50    o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D)
51      + internal_wave (shift in writing cg2d_ini_res)
52    checkpoint54a_pre
53    
54    o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice
55      - modified verification/lab_sea and natl_box_adjoint accordingly
56    
57    checkpoint54
58    checkpoint53g_post
59    o prepare splitting of thermodynamics: store convect.counter in common block
60    o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error)
61      output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave
62    o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection
63    o new parameter "nShapS": allow to treat differently S from T (nShapT)
64    o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S)
65    o restore adjointability
66    
67    checkpoint53f_post
68    o modifications that affect AIM experiment results (update output.txt):
69      - no advection of S at top interface Nr (pkg/generic_advdiff)
70      - air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F)
71    o AIM pkg:
72      - include stability function into surf.Flux derivative relative to Tsurf
73      - calculate clear-sky radiation & surface temp. change (for diagnostics)
74    
75    checkpoint53e_post
76    o merged cylindrical coord configuration
77    o added rotating_tank experiment
78    checkpoint53e_pre
79    
80    checkpoint53d_post
81    o faulks upgraded: re-generate output.txt that have changed:
82       global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box
83    o Added Bryan and Lewis, 1979, vertical diffusivity profile
84    o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing.
85    o added Sadourny discretization of Coriolis
86      - moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h
87      - re-enabled use of omega3 (useAbsVorticity)
88    o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for
89      vector-invariant equations
90      - note: does *NOT* yet use same variable visc. for no-slip BC's.
91    o recoded the lateral boundary conditions for non-hydrostatic w, this time
92      hopefully without new bugs
93      - still to do: biharmonic friction for non-hydrostatic w
94    o bug fix for mom_*_sidedrag: rA -> rAs,rAw
95    o regenerated output for global_ocean_ebm (using -ieee)
96    o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation
97      of mom_common/
98      - simple re-arrangement of instructions within computing loop
99    checkpoint53d_pre
100    
101    checkpoint53c_post
102    o new version of coupler for AIM+thSIce and Ocean models
103     - new fields (SSS,h_MixLayer ...) are exchanged through the coupler
104     - land: change Evaporation of snow
105     - aim with thSIce: fix bug in snow-precip.
106    o changes to calc_gw.F
107     - bug fix for w^2 term near the bottom boundary
108     - (hopefully) improve the lateral slip boundary condtions for use with
109        partial/looped cells
110      - because the bug fix changes two verification experiments anyway (exp5
111        and plume on slope), change the lateral boundary condition from half slip
112        to the value of no_slip_sides
113    o ebm package wasnt quite up to the parallel task. Fixed that.
114    o Adjoint of EBM package + verification
115      * TLM OK
116      * ADM not sufficient accuracy yet (needs further testing)
117    
118    checkpoint53b_post
119    o Commiting new energy balance model to repository
120      * package is pkg/ebm
121      * verif. is verification/global_ocean_ebm
122      * references are in ebm_driver.F
123    C      * X. Wang, P. Stone and J. Marotzke, 1999:
124    C        Global thermohaline circulation. Part I:
125    C        Sensitivity to atmospheric moisture transport.
126    C        J. Climate 12(1), 71-82
127    C      * X. Wang, P. Stone and J. Marotzke, 1999:
128    C        Global thermohaline circulation. Part II:
129    C        Sensitivity with interactive transport.
130    C        J. Climate 12(1), 83-91
131    C      * M. Nakamura, P. Stone and J. Marotzke, 1994:
132    C        Destabilization of the thermohaline circulation
133    C        by atmospheric eddy transports.
134    C        J. Climate 7(12), 1870-1882
135    o Will need long integration testing.
136    checkpoint53b_pre
137    
138    o created pkg/mom_common in preparation for variable viscosity code
139    o renamed and split ini_mnc_io
140  o pkg/land: only liquid water can diffuse or run-off  o pkg/land: only liquid water can diffuse or run-off
141  o AIM using land: soil wetness availability account for snow  o AIM using land: soil wetness availability account for snow
142  o added printMapIncludesZeros to EEPARMS namelist  o added printMapIncludesZeros to EEPARMS namelist
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