--- MITgcm/doc/tag-index	2005/02/07 03:49:59	1.443
+++ MITgcm/doc/tag-index	2005/05/19 16:26:36	1.488
@@ -1,8 +1,106 @@
-$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.443 2005/02/07 03:49:59 jmc Exp $
+$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.488 2005/05/19 16:26:36 jmc Exp $
+$Name:  $
 
     Notes on tags used in MITgcmUV
     ==============================
 
+checkpoint57h_done
+  tag after changing user customized files (DIAGNOSTICS_SIZE.h, 
+  data.diagnostics, data.gchem, data.ptracers) is done.
+
+o pkg/diagnostics: prepare for Global/Regional statistics. 
+  add 2nd namelist in data.diagnostics and update DIAGNOSTICS_SIZE.h 
+o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE
+  and rename it: DIFFERENT_MULTIPLE
+
+checkpoint57h_post
+o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers
+o pkg/diagnostics: change output frequency, now in seconds (instead
+  of Nb of iterations). This requires to change data.diagnostics.
+checkpoint57h_pre
+
+o in mnc, let the user create the output dir if both mnc_outdir_date
+  and mnc_outdir_num are false
+o add fflags() to pkg/diagnostics which allows one to specify, on a
+  per-file basis, the file precision [default behavior is unchanged]
+o added diagnostics to pkg/kpp, including computation of mixed layer
+  depth based on a temperature/density criterion
+o updated verification/natl_box to test the new pkg/kpp diagnostics
+o bugs fixed (with useAbsVorticity=T & with useJamartMomAdv=T)
+o test AB-3 code with 4th.Order advection scheme (advect_xy/input.ab3_c4)
+o fix mnc flags in pkg/seaice so that they are "owned" by seaice,
+  not mnc -- this mistake was found by JMC and is now corrected
+
+checkpoint57g_post
+o add Adams-Bashforth 3rd Order time stepping:
+  - default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3)
+  - not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ...
+checkpoint57g_pre
+
+o make lambda[Theta,Salt]ClimRelax spatially varying
+  (default remains spatially uniform constant based on tau)
+o added new control variables
+  * init. uVel, vVel, etanN
+  * lambda[Theta,Salt]ClimRelax
+o separate masks used for ctrl_pack/unpack 'from write_grid' output
+  (suggested by G. Forget)
+
+checkpoint57f_post
+o add parameter "baseTime" = model base time = time at iteration zero
+  new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to 
+  account for baseTime shift
+o move Coriolis arrays from PARAMS.h to GRID.h
+checkpoint57f_pre
+
+o mnc-ifying the seaice package
+o introduced an alternative length scale calculation for use in the limiting
+  maximum viscosity (off by default, see mom_vi_hdissip.F for details)
+o S/R ptracers_calc_diff: argument list bug for CALL KPP_CALC_DIFF_S
+o added modified Leith scheme with viscosity proportional to grad(Hdiv) 
+  as well as grad(vort3).  Made it compatible with both approximate form
+  for the cubed sphere and full form of these gradients.  Added flag
+  useFullLeith to select between approximate and full form.  
+o add "d0" in getcon.F to reduce differences between compilers/platforms
+  update output.txt of exp. fizhi-gridalt-hs
+o change port_rand funtion to allow to set the seed.
+o fix obscure MNC bug involving conversion between reals and integers
+  - it caused no problems with certain (eg. gcc, ifc) compilers but the 
+    new version is now more standards-compliant
+o adjoint-related modifications
+  * gad_dst3_adv_?: to be able to use advscheme=30 in adjoint
+  * gad_calc_rhs: fool adjoint, revert to advscheme=30 in reverse when using 33
+  * mom_vi_hdissip: to be able to use Leith scheme in adjoint
+
+checkpoint57e_post
+o Adding eddy stress controls a la Ferreira et al.
+checkpoint57e_pre (actually was tagged: eckpoint57e_pre)
+
+o fizhi pkg: fix AtoC and CtoA when called with same input & output array
+  update output.txt of exp. fizhi-gridalt-hs
+o add more "Z" dimensions and associated coordinate vars to MNC
+o pkg/exf: added twoDigitYear capability for option useExfYearlyFields
+o parameter calendarDumps: when set, approximate months (30-31 days) and years
+  (360-372 days) for parameters chkPtFreq, pChkPtFreq, taveFreq, SEAICE_taveFreq,
+  KPP_taveFreq, and freq in pkg/diagnostics are converted to exact calendar
+  months and years.  Requires pkg/cal.
+o diagnostics: add pickup functionality
+  - off by default for backwards compatibility
+  - current version only uses MDSIO -- MNC will be added
+o allow to use pkg diagnostics for LAND pkg output & Shapiro Tendencies.
+o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2)
+
+checkpoint57d_post
+o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing
+o modify verification/ideal_2D_oce so that it tests the creation of mnc 
+  output from the diagnostics package
+o temporary fix in EXCH2_UV: add a 3rd call to fix the 24.tiles CS-grid set-up
+o make genmake2 more portable by using ".$FS" instead of ".f" for more
+  of the test compilations (eg. IBM xlf on Mac OSX w/HFS filesys)
+o add coordinate variables to the MNC output from the diagnostics package
+o change MNC-flags default value: true when useMNC=TRUE
+o add a "readgrid_mnc" flag to MNC and give model/src/ini_curvilinear_grid.F
+  the ability (off by default) to read the grid information using MNC 
+o lab_sea: use LSR_ERROR=1.E-12 for testing ; update output.txt
 o diagnostics: fix a bug (sub-set of levels); keep full precision when averaging
 o do snap-shot diagnostics at the middle of the time-interval (instead of 
   at the end).