3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
o introduced an alternative length scale calculation for use in the limiting |
7 |
|
maximum viscosity (off by default, see mom_vi_hdissip.F for details) |
8 |
|
o S/R ptracers_calc_diff: argument list bug for CALL KPP_CALC_DIFF_S |
9 |
|
o added modified Leith scheme with viscosity proportional to grad(Hdiv) |
10 |
|
as well as grad(vort3). Made it compatible with both approximate form |
11 |
|
for the cubed sphere and full form of these gradients. Added flag |
12 |
|
useFullLeith to select between approximate and full form. |
13 |
|
o add "d0" in getcon.F to reduce differences between compilers/platforms |
14 |
|
update output.txt of exp. fizhi-gridalt-hs |
15 |
|
o change port_rand funtion to allow to set the seed. |
16 |
|
o fix obscure MNC bug involving conversion between reals and integers |
17 |
|
- it caused no problems with certain (eg. gcc, ifc) compilers but the |
18 |
|
new version is now more standards-compliant |
19 |
|
|
20 |
|
checkpoint57e_post |
21 |
|
o Adding eddy stress controls a la Ferreira et al. |
22 |
|
checkpoint57e_pre |
23 |
|
|
24 |
|
o fizhi pkg: fix AtoC and CtoA when called with same input & output array |
25 |
|
update output.txt of exp. fizhi-gridalt-hs |
26 |
|
o add more "Z" dimensions and associated coordinate vars to MNC |
27 |
|
o pkg/exf: added twoDigitYear capability for option useExfYearlyFields |
28 |
|
o parameter calendarDumps: when set, approximate months (30-31 days) and years |
29 |
|
(360-372 days) for parameters chkPtFreq, pChkPtFreq, taveFreq, SEAICE_taveFreq, |
30 |
|
KPP_taveFreq, and freq in pkg/diagnostics are converted to exact calendar |
31 |
|
months and years. Requires pkg/cal. |
32 |
|
o diagnostics: add pickup functionality |
33 |
|
- off by default for backwards compatibility |
34 |
|
- current version only uses MDSIO -- MNC will be added |
35 |
|
o allow to use pkg diagnostics for LAND pkg output & Shapiro Tendencies. |
36 |
|
o pkg/shap_filt: fix for multi-tiles per face (CS-grid with EXCH2) |
37 |
|
|
38 |
|
checkpoint57d_post |
39 |
|
o pkg/thsice used in the ocean: fix tile Pb related to sIceLoad forcing |
40 |
|
o modify verification/ideal_2D_oce so that it tests the creation of mnc |
41 |
|
output from the diagnostics package |
42 |
|
o temporary fix in EXCH2_UV: add a 3rd call to fix the 24.tiles CS-grid set-up |
43 |
|
o make genmake2 more portable by using ".$FS" instead of ".f" for more |
44 |
|
of the test compilations (eg. IBM xlf on Mac OSX w/HFS filesys) |
45 |
|
o add coordinate variables to the MNC output from the diagnostics package |
46 |
|
o change MNC-flags default value: true when useMNC=TRUE |
47 |
|
o add a "readgrid_mnc" flag to MNC and give model/src/ini_curvilinear_grid.F |
48 |
|
the ability (off by default) to read the grid information using MNC |
49 |
|
o lab_sea: use LSR_ERROR=1.E-12 for testing ; update output.txt |
50 |
|
o diagnostics: fix a bug (sub-set of levels); keep full precision when averaging |
51 |
|
o do snap-shot diagnostics at the middle of the time-interval (instead of |
52 |
|
at the end). |
53 |
|
o update exp. aim.5l_cs (use default LAND_OPTIONS.h file) and add |
54 |
|
new test for AIM with thSIce + slab-ocean |
55 |
|
o cpl_aim+ocn test: update output (optfile & default GMREDI_OPTIONS.h) |
56 |
|
o move state variable diagnostics to the beginning of the time step ; |
57 |
|
(note: still needs some work specially for snap-shot diagnostics) |
58 |
|
duplicate & replace UVELVVEL diagnostics with UV_VEL_C & UV_VEL_Z |
59 |
|
|
60 |
|
checkpoint57c_post |
61 |
|
o Change testing option (-ieee) to get closer agreement between g77 & ifort |
62 |
|
o generate new output.txt files on faulks with g77 & the new -ieee option |
63 |
|
checkpoint57c_pre |
64 |
|
|
65 |
|
o add "_d 0" in freeze ; change some "FLOAT" to "DFLOAT" and went back (TAF); |
66 |
|
update output.txt of exp. global_ocean.90x40x15 |
67 |
|
o fix in ini_eos.F (one "_d 0" was missing): now g77 & ifc give much closer |
68 |
|
results; update global_ocean_pressure & global_ocean.cs32x15 output.txt |
69 |
|
o add saltFlux(+File) forcing capability with periodicExternalForcing |
70 |
|
o allow to use pkg diagnostics for GM-Redi & ThSIce output |
71 |
|
o diagnostics_fill: fill in up to sNx+1 or sNy+1 (if U,V or Z pt) for mnc. |
72 |
|
o improvements for the MNC output from DIAGNOSTICS: |
73 |
|
- correct handling of the unlimitied dimension |
74 |
|
- all dims now have associated coordinate variables |
75 |
|
- variables located at U, V, and Corner ("Z") points are now written |
76 |
|
with the correct horzontal dimensions (eg. 'Xp1', 'Yp1') so that |
77 |
|
*all* data points are output |
78 |
|
o added seaice_summary.F and removed obsolete ALLOW_SEAICE's from pkg/seaice |
79 |
|
o added pkg/seaice/seaice_monitor.F |
80 |
|
o mdsio_readfield.F can now read files visible only to master MPI process. |
81 |
|
o pkg/seaice: some test code for ice-modified ocean stress |
82 |
|
o exf_getffields interpolation defaults to bilinear for all scalar forcing |
83 |
|
fields (remains bicubic for wind velocity and stress). This avoids, e.g., |
84 |
|
spurious negative numbers for precipitation and humidity. Will cause |
85 |
|
some small numerical differences for integrations using pkg/exf/exf_interp.F. |
86 |
|
o pkg/ctrl/ |
87 |
|
* Add ctrlvec diagnostics in pack/unpack for nondimensional I/O |
88 |
|
May be enabled via doPackDiag |
89 |
|
* introduce z-scaling of |
90 |
|
+ gradient (doZscalePack) and |
91 |
|
+ control (doZscaleUnpack) |
92 |
|
o pkg/mdsio/ |
93 |
|
* enable useSingleCpuIO for state estimation (ctrl_pack/unpack) mdsio_gl.F |
94 |
|
* N.B.: leave tiled I/O for tapelev (i.e. mds...vector) |
95 |
|
|
96 |
|
checkpoint57b_post |
97 |
|
o simplify options in diagnostics_fill arguments (remove weird combinations) |
98 |
|
o fix MNC coordinate variables so that they now contain per-face index |
99 |
|
values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in |
100 |
|
general, EXCH2 grids are only aligned to a "local" coordinate system |
101 |
|
o test diagnostics pkg in dic_example (no output) and ideal_2D_oce (with ouput) |
102 |
|
o Implement instantaneous output within pkg diagnostics: |
103 |
|
setting a negative frequency in data.diagnostics produces |
104 |
|
"snap-shot" output (as opposed to time-average if freq > 0) |
105 |
|
o move out off EQUIVALENCE all diagnostics that fizhi does not use ; |
106 |
|
NOTE: change ptracer diagnostics name: use 2 characters to work with |
107 |
|
more than 9 tracers. Add also diagnostics of advect & diffus flux. |
108 |
|
o more CF compliance: convert all MNC 'iter' variables to 'T' so that it |
109 |
|
becomes the coordinate variable for the 'T' dimension |
110 |
|
o add CF-style coordinate variables to MNC |
111 |
|
- just a first cut: numbers are meaningless on the cubesphere and |
112 |
|
missing along the T axis but otherwise it works! |
113 |
|
o add surface flux diagnostics: TAUX, TAUY, TFLUX, TRELAX, TICE, SFLUX, SRELAX |
114 |
|
o pkg/thSIce: read initial state from 6 files ; allow monitor to use MNC. |
115 |
|
o add diagnostics of advective & diffusive flux for T & S (pTracers coming soon) |
116 |
|
this is based directly on what the model compute, so that the content of |
117 |
|
each diagnostics might be affected by switching options (e.g., implicitDiffusion) |
118 |
|
o small changes for diagnostics (gad_biharm_?.F, arguments of S/R impldiff.F) |
119 |
|
o clean up build options files for SunOS, in particular |
120 |
|
- remove -traditional from xmakedepend |
121 |
|
- change -xarch=v9 to -xarch=native for f77 |
122 |
|
- restore use of make (not gmake) |
123 |
|
- add CC=gcc if using g77 |
124 |
|
o changes per discussion of AM, JMC, & EH3 today: |
125 |
|
- move redundant "grid" variables out of "state" -- in preparation of |
126 |
|
creating proper CF-style coordinate variables and in recognition |
127 |
|
that any/all grid variables can be easily copied (eg. w/NCO) from |
128 |
|
the grid files into any of the other NetCDF files |
129 |
|
- *always* output grid variables with MDSIO (this will eventually be |
130 |
|
changed) |
131 |
|
- output MNC grid file if useMNC is true |
132 |
|
o every instance of _END_MASTER() has been found and replaced with |
133 |
|
_END_MASTER( myThid ) in order to satisfy certain picky Sun |
134 |
|
preprocessors |
135 |
|
o re-arrange diagnostics pkg initialisation: |
136 |
|
- allow each package to extend the available diagnostics list |
137 |
|
- add some checking and fix small problems (multi-threaded, ...) |
138 |
|
- new S/R diagnostics_fill (replace fill_diagnostics): |
139 |
|
look through the short list of active diag. (instead of the long list) |
140 |
|
create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active |
141 |
|
|
142 |
|
checkpoint57a_post |
143 |
|
o this set of changes restores TAMC compatibility |
144 |
|
tested for global_ocean.90x40x15 adjoint on trough |
145 |
|
(what a pain) |
146 |
|
|
147 |
|
checkpoint57a_pre |
148 |
|
o some modifs in tools/build_options for sunos |
149 |
|
o call ctrl_pack for ctrl at end for optimcycle=0 |
150 |
|
|
151 |
|
checkpoint57 |
152 |
|
o add horizontal bi-harmonic viscosity for vertical velocity |
153 |
|
- new parameter viscA4W (defaults to viscA4) |
154 |
|
- affects only non-hydrostatic code |
155 |
|
- to be done: no-slip lateral boundary conditions |
156 |
|
o switch back to "sflux = sflux - runoff" in exf_getforcing.F |
157 |
|
o implement Implicit Vertical advection for pTracers |
158 |
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
159 |
(implemented also for implicit vertical diffusion & advection) |
(implemented also for implicit vertical diffusion & advection) |
160 |
o OBCS: extend application of tracer open boundary conditions |
o OBCS: extend application of tracer open boundary conditions |
161 |
to a strip beyond the boundary of width Olx/Oly |
to a strip beyond the boundary of width Olx/Oly |
162 |
|
o add call monitor to TAF set of required calls (flow directives) |
163 |
|
and include in natl_box_adjoint |
164 |
|
o untangle a few ifdefs related to cost, ctrl, autodiff |
165 |
|
untangel a few ALLOW_ECCO_OPTIMIZATION |
166 |
|
o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
167 |
|
(theta2, salt2 in ecco_cost_weights) |
168 |
|
|
169 |
checkpoint56c_post |
checkpoint56c_post |
170 |
o OBCS as control variables |
o OBCS as control variables |