| 3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
| 4 |
============================== |
============================== |
| 5 |
|
|
| 6 |
|
o add saltFlux(+File) forcing capability with periodicExternalForcing |
| 7 |
|
o allow to use pkg diagnostics for GM-Redi & ThSIce output |
| 8 |
|
o diagnostics_fill: fill in up to sNx+1 or sNy+1 (if U,V or Z pt) for mnc. |
| 9 |
|
o improvements for the MNC output from DIAGNOSTICS: |
| 10 |
|
- correct handling of the unlimitied dimension |
| 11 |
|
- all dims now have associated coordinate variables |
| 12 |
|
- variables located at U, V, and Corner ("Z") points are now written |
| 13 |
|
with the correct horzontal dimensions (eg. 'Xp1', 'Yp1') so that |
| 14 |
|
*all* data points are output |
| 15 |
|
o added seaice_summary.F and removed obsolete ALLOW_SEAICE's from pkg/seaice |
| 16 |
|
o added pkg/seaice/seaice_monitor.F |
| 17 |
|
o mdsio_readfield.F can now read files visible only to master MPI process. |
| 18 |
|
o pkg/seaice: some test code for ice-modified ocean stress |
| 19 |
|
o exf_getffields interpolation defaults to bilinear for all scalar forcing |
| 20 |
|
fields (remains bicubic for wind velocity and stress). This avoids, e.g., |
| 21 |
|
spurious negative numbers for precipitation and humidity. Will cause |
| 22 |
|
some small numerical differences for integrations using pkg/exf/exf_interp.F. |
| 23 |
|
o pkg/ctrl/ |
| 24 |
|
* Add ctrlvec diagnostics in pack/unpack for nondimensional I/O |
| 25 |
|
May be enabled via doPackDiag |
| 26 |
|
* introduce z-scaling of |
| 27 |
|
+ gradient (doZscalePack) and |
| 28 |
|
+ control (doZscaleUnpack) |
| 29 |
|
o pkg/mdsio/ |
| 30 |
|
* enable useSingleCpuIO for state estimation (ctrl_pack/unpack) mdsio_gl.F |
| 31 |
|
* N.B.: leave tiled I/O for tapelev (i.e. mds...vector) |
| 32 |
|
|
| 33 |
|
checkpoint57b_post |
| 34 |
|
o simplify options in diagnostics_fill arguments (remove weird combinations) |
| 35 |
|
o fix MNC coordinate variables so that they now contain per-face index |
| 36 |
|
values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in |
| 37 |
|
general, EXCH2 grids are only aligned to a "local" coordinate system |
| 38 |
|
o test diagnostics pkg in dic_example (no output) and ideal_2D_oce (with ouput) |
| 39 |
|
o Implement instantaneous output within pkg diagnostics: |
| 40 |
|
setting a negative frequency in data.diagnostics produces |
| 41 |
|
"snap-shot" output (as opposed to time-average if freq > 0) |
| 42 |
|
o move out off EQUIVALENCE all diagnostics that fizhi does not use ; |
| 43 |
|
NOTE: change ptracer diagnostics name: use 2 characters to work with |
| 44 |
|
more than 9 tracers. Add also diagnostics of advect & diffus flux. |
| 45 |
|
o more CF compliance: convert all MNC 'iter' variables to 'T' so that it |
| 46 |
|
becomes the coordinate variable for the 'T' dimension |
| 47 |
|
o add CF-style coordinate variables to MNC |
| 48 |
|
- just a first cut: numbers are meaningless on the cubesphere and |
| 49 |
|
missing along the T axis but otherwise it works! |
| 50 |
|
o add surface flux diagnostics: TAUX, TAUY, TFLUX, TRELAX, TICE, SFLUX, SRELAX |
| 51 |
|
o pkg/thSIce: read initial state from 6 files ; allow monitor to use MNC. |
| 52 |
|
o add diagnostics of advective & diffusive flux for T & S (pTracers coming soon) |
| 53 |
|
this is based directly on what the model compute, so that the content of |
| 54 |
|
each diagnostics might be affected by switching options (e.g., implicitDiffusion) |
| 55 |
|
o small changes for diagnostics (gad_biharm_?.F, arguments of S/R impldiff.F) |
| 56 |
|
o clean up build options files for SunOS, in particular |
| 57 |
|
- remove -traditional from xmakedepend |
| 58 |
|
- change -xarch=v9 to -xarch=native for f77 |
| 59 |
|
- restore use of make (not gmake) |
| 60 |
|
- add CC=gcc if using g77 |
| 61 |
|
o changes per discussion of AM, JMC, & EH3 today: |
| 62 |
|
- move redundant "grid" variables out of "state" -- in preparation of |
| 63 |
|
creating proper CF-style coordinate variables and in recognition |
| 64 |
|
that any/all grid variables can be easily copied (eg. w/NCO) from |
| 65 |
|
the grid files into any of the other NetCDF files |
| 66 |
|
- *always* output grid variables with MDSIO (this will eventually be |
| 67 |
|
changed) |
| 68 |
|
- output MNC grid file if useMNC is true |
| 69 |
|
o every instance of _END_MASTER() has been found and replaced with |
| 70 |
|
_END_MASTER( myThid ) in order to satisfy certain picky Sun |
| 71 |
|
preprocessors |
| 72 |
|
o re-arrange diagnostics pkg initialisation: |
| 73 |
|
- allow each package to extend the available diagnostics list |
| 74 |
|
- add some checking and fix small problems (multi-threaded, ...) |
| 75 |
|
- new S/R diagnostics_fill (replace fill_diagnostics): |
| 76 |
|
look through the short list of active diag. (instead of the long list) |
| 77 |
|
create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active |
| 78 |
|
|
| 79 |
|
checkpoint57a_post |
| 80 |
|
o this set of changes restores TAMC compatibility |
| 81 |
|
tested for global_ocean.90x40x15 adjoint on trough |
| 82 |
|
(what a pain) |
| 83 |
|
|
| 84 |
|
checkpoint57a_pre |
| 85 |
|
o some modifs in tools/build_options for sunos |
| 86 |
|
o call ctrl_pack for ctrl at end for optimcycle=0 |
| 87 |
|
|
| 88 |
|
checkpoint57 |
| 89 |
|
o add horizontal bi-harmonic viscosity for vertical velocity |
| 90 |
|
- new parameter viscA4W (defaults to viscA4) |
| 91 |
|
- affects only non-hydrostatic code |
| 92 |
|
- to be done: no-slip lateral boundary conditions |
| 93 |
|
o switch back to "sflux = sflux - runoff" in exf_getforcing.F |
| 94 |
|
o implement Implicit Vertical advection for pTracers |
| 95 |
|
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
| 96 |
|
(implemented also for implicit vertical diffusion & advection) |
| 97 |
|
o OBCS: extend application of tracer open boundary conditions |
| 98 |
|
to a strip beyond the boundary of width Olx/Oly |
| 99 |
|
o add call monitor to TAF set of required calls (flow directives) |
| 100 |
|
and include in natl_box_adjoint |
| 101 |
|
o untangle a few ifdefs related to cost, ctrl, autodiff |
| 102 |
|
untangel a few ALLOW_ECCO_OPTIMIZATION |
| 103 |
|
o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
| 104 |
|
(theta2, salt2 in ecco_cost_weights) |
| 105 |
|
|
| 106 |
|
checkpoint56c_post |
| 107 |
|
o OBCS as control variables |
| 108 |
|
- update ctrl_ad_diff.list, obcs_ad_diff.list |
| 109 |
|
- remove balance of obcs controls from default |
| 110 |
|
- fix index bug nobcs in ctrl_init |
| 111 |
|
- fix dummy fields filen in ctrl_pack |
| 112 |
|
- add dummy weights for obcs |
| 113 |
|
o lsopt: comment out fort.94 output |
| 114 |
|
o optim: |
| 115 |
|
- remove unnecessary header files |
| 116 |
|
- adjusted namelists |
| 117 |
|
- add xerbla.F to Makefile |
| 118 |
|
o exf: |
| 119 |
|
- multiple modifications of exf_check_range |
| 120 |
|
- unit change in exf_init_runoff from [m/year] to [m/s] |
| 121 |
|
o mdsio: |
| 122 |
|
- i/o-vector change debugLevel from debLevA to debLevB |
| 123 |
|
|
| 124 |
|
checkpoint56b_post |
| 125 |
|
o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that |
| 126 |
|
is called from DO_THE_MODEL_IO |
| 127 |
|
- rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE |
| 128 |
|
- introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq) |
| 129 |
|
- clean up PTRACERS_WRITE_TIMEAVE a little |
| 130 |
o add another verification experiment that tests both the cfc-pkg and |
o add another verification experiment that tests both the cfc-pkg and |
| 131 |
the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with |
the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with |
| 132 |
reactive tendencies treated inline with regular timestepping |
reactive tendencies treated inline with regular timestepping |
Parent Directory
| 
Revision Log
| 
Revision Graph
| 
Patch