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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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6 |
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o modfied mdsio_writefield.F to handle non-global files under exch2 |
7 |
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o update AIM Cubed-Sphere exp (aim.5l_cs): |
8 |
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use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
9 |
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o update AIM Equatorial Channel exp: |
10 |
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use standard aim_v23 pkg and change the SST fields to be more realistic. |
11 |
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o globalFile now works with exch2 |
12 |
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o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
13 |
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mon_vort3.F to make exch2 friendly with >1 tile per cube |
14 |
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face |
15 |
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o limit timeave output for hi-res integrations |
16 |
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17 |
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checkpoint52i_post |
18 |
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o removed CPP_EEOPTIONS.h from verification/*/code |
19 |
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o updated the tiling for global_ocean_pressure |
20 |
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checkpoint52i_pre |
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|
22 |
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o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
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the old pkg/aim). |
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25 |
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checkpoint52h_pre |
26 |
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o shortened offending lines in exch2_send_rx?.template |
27 |
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o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
28 |
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o genmake2: add build & execute test for NetCDF code |
29 |
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o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
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old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
31 |
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o added useSingleCPUIO flag to monitor.F and mon_out.F |
32 |
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o added temporary hack for sea-ice dynamics on the cube: |
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metric terms are ignored and it is assumed that |
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there is no sea-ice on cube faces 1, 2, 4, and 5. |
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checkpoint52f_post |
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o added exch2 cube routines to pkg/exch2 |
38 |
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o modified hs94.cs-32x32x5 to use it |
39 |
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o added new grid files to hs94.cs-32x32x5 |
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checkpoint52f_pre |
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42 |
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checkpoint52e_post |
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o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
44 |
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for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
45 |
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o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
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to work with implicit vertical advection and AB ; |
47 |
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o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
48 |
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o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
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front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
50 |
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checkpoint52e_pre |
51 |
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52 |
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o fix bug in impldiff when Nr=1 or Nr=2. |
53 |
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o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
54 |
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o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test. |
55 |
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o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
56 |
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ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
57 |
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o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |
58 |
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o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
59 |
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o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
60 |
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61 |
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checkpoint52d_post |
62 |
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o re-tiled many expts to allow comparison in multi-processor mode |
63 |
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- updated output accordingly |
64 |
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- changed hs94.128x64x5 to use intial T from file rather than use the |
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random number generator |
66 |
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o add infrastructure in model routines for fizhi and gridalt packages |
67 |
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o change global_ocean.cs32x15 because of Pb with GM on CS-grid. |
68 |
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o changes to permit hi-res, cubed-sphere, configuration |
69 |
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- added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F |
70 |
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- added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F |
71 |
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- added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation |
72 |
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of surface winds for the cube |
73 |
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(A verification experiment, based on global_ocean.cs32x15, but with |
74 |
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pkg/seaice turned on and with on-the-fly interpolation from the NCEP |
75 |
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Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice, |
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complete with example surface forcing files and matlab scripts to look |
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at the output and compare it with that of global_ocean.cs32x15.) |
78 |
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o packages pickup: $PKG_write_pickup called from packages_write_pickup ; |
79 |
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but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code |
80 |
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to conform to the common rule. |
81 |
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o check-in the first version of the coupler + interfaces for multi-components |
82 |
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set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI. |
83 |
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- imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD). |
84 |
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- atmosphere: use pkg aim_v23 ; no sea-ice for now. |
85 |
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- ocean and atmos. share the same horizontal grid (no interpolation). |
86 |
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- exchanges between component and coupler is done in forward_step |
87 |
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o new verification experiment, cpl_aim+ocn: |
88 |
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coupled ocean - AIM atmosphere on cs32 grid. |
89 |
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|
90 |
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checkpoint52d_pre |
91 |
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o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
92 |
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o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
93 |
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|
94 |
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checkpoint52c_post |
95 |
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o Fixing OPTIONS files for use of exf: |
96 |
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- ALLOW_ECCO not needed |
97 |
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- ECCO_CPPOPTIONS.h should not be included from |
98 |
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EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h |
99 |
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as has been the case in the past |
100 |
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- All cal/exf related options are currently set in |
101 |
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single header file. Should remain so until we |
102 |
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agree on a consistent new policy. |
103 |
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o Removed all CPP options for cal package. |
104 |
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cal has no more CPP options. |
105 |
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o modified STOREs in GAD_ADVECTION |
106 |
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o corrected key comp. for passkey |
107 |
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|
108 |
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checkpoint52b_post |
109 |
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o new version: "thsice" of thermodynamic sea-ice pkg: |
110 |
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- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
111 |
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- modify fluxes but do not change theta directly; |
112 |
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- light cleaning of bulk_force pkg (still needed with thsice). |
113 |
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- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
114 |
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+ output_thsice.txt to test thsice & bulk_force pkgs. |
115 |
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o put back grid & coriolis monitor output. |
116 |
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checkpoint52b_pre |
117 |
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|
118 |
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o call "do_the_model_io" at the beginning (=> dump initial state) |
119 |
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o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
120 |
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o sort out interplay between tamc.h and PTRACERS_OPTIONS.h |
121 |
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(need info on NUMBER_OF_PTRACERS) |
122 |
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o missing PTRACERS headers in some routines |
123 |
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o default tamc.h in pkg/autodiff supposed to crash |
124 |
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to ensure proper customization |
125 |
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126 |
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checkpoint52a_post |
127 |
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o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
128 |
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- moved surfaceTendencyTice from pkg/seaice to main code |
129 |
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- subroutine FREEZE_SURFACE now limits only surface temperature |
130 |
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and is called in FORWARD_STEP (if allowFreezing=.TRUE.) |
131 |
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=> new output.txt for global_ocean.cs32x15 & global_with_exf |
132 |
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- keep the old version of FREEZE for backward compatibility; |
133 |
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global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE. |
134 |
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- corresponding modifs for TAF directives |
135 |
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o added surface flux output variables to TIMEAVE_STATVARS |
136 |
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o time-averaged output for pkg/ptracers |
137 |
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o fix problem with ECCO-related divided adjoint |
138 |
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snapshot file was missing some ad-variables, |
139 |
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but no warning issued by TAF |
140 |
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|
141 |
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checkpoint52a_pre |
142 |
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o some bug fixes for #undef REAL4_IS_SLOW |
143 |
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|
144 |
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checkpoint52 = ecco_c52_e35 |
145 |
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o after testing adjoints of checkpoint51u_post |
146 |
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|
147 |
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checkpoint51u_post |
148 |
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o this is the post-merge tag of the ecco-branch |
149 |
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(needs another clean checkout and re-testing) |
150 |
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o various natl_box_adjoint configs and results |
151 |
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but no input fields |
152 |
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o obcs adjoint not yet merged! |
153 |
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o adding ECCO global 1x1 and 2x2 degree configs |
154 |
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o updated/extended some store directives for seaice |
155 |
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o pkg/ecco now containes ecco-specific part of cost function |
156 |
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o top level routines the_main_loop, forward_step |
157 |
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supersede those in model/src/ |
158 |
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previous input data.cost now in data.ecco |
159 |
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(new namelist ecco_cost_nml) |
160 |
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o in ctrl/ cleaned some cross-dependencies and updated CPP options |
161 |
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162 |
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checkpoint51t_post |
163 |
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o this is the pre-merge tag of the ecco-branch |
164 |
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|
165 |
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checkpoint51s_post |
166 |
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o cleanup: removed various obsolete #define-s |
167 |
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o pkg/grdchk |
168 |
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- renamed 'ph-grd 3' to 'grad-res' |
169 |
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- merged from ecco-branch |
170 |
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(remaining bug fixes for obcs gradient checks) |
171 |
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- additional high-precision output for testreport |
172 |
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(grep for 'precision_grdchk_result') |
173 |
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|
174 |
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checkpoint51r_post |
175 |
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o cleaned up or removed CPP_OPTIONS.h files |
176 |
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o updated results for some of the tests to reflect the new |
177 |
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optfiles (-ieee: -O0 instead of -O3) |
178 |
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|
179 |
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checkpoint51q_post |
180 |
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o cd_code: |
181 |
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- moved cd_scheme.F -> cd_code_scheme.F |
182 |
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- separate read_checkpoint from cd_code_ini_vars.F |
183 |
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- separated cd_code part from write_checkpoint |
184 |
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- updated AD_SOURCE, generated .flow |
185 |
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- added CD_CODE_VARS.h to the_main_loop |
186 |
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- Moving cd_code specific store dir.s to pkg/cd_code |
187 |
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o ctrl package totally restructured |
188 |
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- pack/unpack now optional and decoupled from |
189 |
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xx_/adxx_ I/O |
190 |
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- ctrl_pack/unpack cleaned |
191 |
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(new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F) |
192 |
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- confined inclusion of AD_CONFIG.h to where necessary. |
193 |
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o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
194 |
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|
195 |
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checkpoint51p_post |
196 |
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o create initial cd_code package |
197 |
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- WARNING: the initialization of fields within packages |
198 |
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is broken because INI_FIELDS (where READ_CHECKPOINT is |
199 |
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called) is called *before* PACKAGES_INIT_VARIABLES. |
200 |
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This seems to be backwards since |
201 |
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1) its important to initially zero the entire field including |
202 |
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the "halo" region |
203 |
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2) zeroing needs to be done *before* reading pickup info |
204 |
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and the pickup call might or might not happen in any |
205 |
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particular run |
206 |
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- this needs an overhaul for R2 |
207 |
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o cleanup verification/*/code/GMREDI_OPTIONS.h |
208 |
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o cleanup testreport |
209 |
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|
210 |
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checkpoint51o_post |
211 |
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o bringing AD-related verif's up to date with genmake2 |
212 |
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- carbon/ |
213 |
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- global_ocean.90x40x15/ |
214 |
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- hs.94.1x64x5/ |
215 |
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- (front_relax/ ) |
216 |
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o (more) consistent directory structure for AD-related verif.'s |
217 |
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o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK |
218 |
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o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF |
219 |
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o bug fix in find_alpha.F for MDJWF: |
220 |
|
- modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for |
221 |
|
change rho -> rho-rhoConst |
222 |
|
- replace call find_rho to find_rhonum |
223 |
|
o initialisation of rFlx extended to full array (required by TAF) |
224 |
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and shifted to thermodynamics |
225 |
|
o removed PTRACERS.h in ptracers routine |
226 |
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o added surfacetendencyPtr to S/R parameter list pracers_forcing |
227 |
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o Correcting initialisations for fVerU, fVerV. |
228 |
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o helping TAF to recognize dependency on kUp for |
229 |
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fVerU, fVerV |
230 |
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o Replacing delZ by delR in pkg/ctrl/ |
231 |
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checkpoint51o_pre |
232 |
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|
233 |
o undid all of cp51 pending some cleanups and discussion |
o undid all of cp51 pending some cleanups and discussion |
234 |
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o added the [#include "AD_CONFIG.h"] statement to all files that need |
235 |
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it for adjoint/tl #defines |
236 |
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o re-worked the build logic in genmake2 to support AD_CONFIG.h |
237 |
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o removed tools/genmake since it no longer works |
238 |
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|
239 |
checkpoint51n_post |
checkpoint51n_post |
240 |
o modifications to make FREEZE flux visible to pkg/kpp |
o modifications to make FREEZE flux visible to pkg/kpp |