3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
checkpoint51a_post |
7 |
|
o added code for biogeochemistry package |
8 |
|
- new pkgs: dic, gchem |
9 |
|
- new subroutine in ptracers |
10 |
|
o modify code for biogeo packages |
11 |
|
- in model/src and pkg/ptracers |
12 |
|
|
13 |
|
checkpoint51 |
14 |
|
o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
15 |
|
- autodiff, ctrl, exf, grdchk, seaice |
16 |
|
kept separate packages |
17 |
|
- cost, ecco, obcs |
18 |
|
o updating verification/internal_wave, verification/lab_sea |
19 |
|
(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
20 |
|
|
21 |
|
checkpoint50i_post |
22 |
|
o Preparing next differentiable checkpoint and sync |
23 |
|
of MAIN vs. ecco-branch |
24 |
|
- 1st step: this one is differentiable |
25 |
|
- 2nd step: next(! not this) checkpoint will have updated packages |
26 |
|
from ecco-branch) |
27 |
|
|
28 |
|
checkpoint50h_post |
29 |
|
o new package "land": provide surface BC for AIM. |
30 |
|
o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
31 |
|
o AIM: use true log-P extrapolation for near surface temp (= as in |
32 |
|
F.Molteni paper) ; update aim.5l_cs output. |
33 |
|
o New variable in PARM03 for more flexible pickups |
34 |
|
o somewhat cleaned package initialisation sequence for |
35 |
|
ctrl/ cost/ ecco/ in packages_... routines |
36 |
|
|
37 |
|
checkpoint50g_post |
38 |
|
o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
39 |
|
- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
40 |
|
- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
41 |
|
made the default because of faster convergence than ADI |
42 |
|
|
43 |
|
checkpoint50f_post |
44 |
|
o exf totally restructured |
45 |
|
- replaced all exf_set_ routines by one generic exf_set_gen.F |
46 |
|
and made sure it's still differentiable |
47 |
|
- split exf_getffields.F into new exf_bulkformulae.F |
48 |
|
- exf_inscal_/exf_outscal_ suffixes consistent with field names |
49 |
|
- updated adjoint/makefile and relevant verif. accordingly |
50 |
|
|
51 |
|
checkpoint50f_pre |
52 |
|
o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
53 |
|
+ change Evap over land. (update aim.5l_cs output) |
54 |
|
o added missing .cvsignores and made uniform across expts |
55 |
|
o changed configuration of tidal_basin_2d expt |
56 |
|
o added pkg/debug functions for tracing code in fatal crashes |
57 |
|
o tidied pkg/monitor to use MONITOR_OPTIONS.h |
58 |
|
o new fn in pkg/monitor to stop model if solution grows too big |
59 |
|
o removed lots of single quotes from comments |
60 |
|
|
61 |
|
checkpoint50e_post |
62 |
|
o make KPP work with PTRACERS |
63 |
|
- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
64 |
|
nearly a copy of kpp_transport_s |
65 |
|
- there is no analogue to SurfaceTendencyS, so I have to use |
66 |
|
gPtr(of the surface layer) instead |
67 |
|
o add a new platform SunFire+mpi (SunFire 15000) to genmake |
68 |
|
checkpoint50e_pre |
69 |
|
|
70 |
|
checkpoint50d_post |
71 |
|
o change kpp output from multiple-record state files to single-record state |
72 |
|
files analogous to write_state.F |
73 |
|
o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
74 |
|
analogous to the cg2d-related output. |
75 |
|
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
76 |
|
so that writing to internal file fn (with length 512) fails. |
77 |
|
checkpoint50d_pre |
78 |
|
|
79 |
|
checkpoint50c_post |
80 |
|
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
81 |
|
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
82 |
|
o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
83 |
|
o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
84 |
|
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
85 |
|
|
86 |
|
checkpoint50c_pre |
87 |
|
Merging from release1_p13: |
88 |
|
o bug fix for pkg/seaice dynamic solver |
89 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
90 |
|
|
91 |
|
checkpoint50b_post |
92 |
|
o store u*,v* in gU,V instead of in guNm1,gvNm1 |
93 |
|
o in order to put the momForcing out of the Adams-Bashforth: |
94 |
|
move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
95 |
|
to timestep.F |
96 |
|
o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays |
97 |
|
o re-generate output for highly sensitive test-exp: |
98 |
|
global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
99 |
|
|
100 |
|
checkpoint50b_pre |
101 |
|
o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
102 |
|
o corrected CPP option mismatch in exf_Bulk... functions for case |
103 |
|
#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
104 |
|
|
105 |
|
checkpoint50a_post |
106 |
|
o Bug fix for merging between c50 and KPP. |
107 |
|
ikey was passed from thermodynamics to kpp_calc via |
108 |
|
common block rather than being recomputed in kpp_calc, |
109 |
|
in contradiction with new key itdkey. |
110 |
|
New key ikppkey created, and tamc.h headers updated. |
111 |
|
|
112 |
|
checkpoint50 |
113 |
|
- 2nd step of merge with ecco-branch: |
114 |
|
merge changes in ecco-branch back into main trunk |
115 |
|
- bug fix in find_alpha |
116 |
|
- more storing in gmredi_calc_tensor.F, kpp_routines.F |
117 |
|
- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
118 |
|
- merged some sliced AD support routines |
119 |
|
|
120 |
|
checkpoint49 |
121 |
|
merged from ecco-branch: |
122 |
|
o exf: |
123 |
|
- Enable initialisation of forcing fields to constant |
124 |
|
(runtime) values. |
125 |
|
- in exf_getffields.F |
126 |
|
Reduce i-/j-loop to interior domain, discarding overlaps. |
127 |
|
That also fixes wrong TAF-key computations for key_1, key_2 |
128 |
|
with bulf formulae. |
129 |
|
- exf_init.F modify #ifdef for exf_init_evap |
130 |
|
- exf_getffieldrec.F, ctrl_getrec.F |
131 |
|
The following INT-usages are not safe: |
132 |
|
fldsecs = int(fldsecs/fldperiod)*fldperiod |
133 |
|
fldcount = int(fldsecs/fldperiod) + 1 |
134 |
|
and were modified. |
135 |
|
o autodiff: checkpoint_lev... |
136 |
|
- updated storing for bulk formulae (some arrays were missing) |
137 |
|
- added state for seaice package |
138 |
|
- synchronized with main branch |
139 |
|
o DIVA: |
140 |
|
Modif.s in |
141 |
|
- the_main_loop.F |
142 |
|
- the_model_main.F |
143 |
|
and added cost_final_restore.F cost_final_store.F |
144 |
|
o With these changes, it is possible to fully separate |
145 |
|
the first forward run to compute the cost function (mdthe_main_loop) |
146 |
|
and adjoint runs over individual DIVA intervals (adthe_main_loop) |
147 |
|
into separate model executions. |
148 |
|
This enables better tuning of DIVA to given queue sizes. |
149 |
|
o Loss of cost function value in consecutive DIVA runs is |
150 |
|
fixed by storing to 'costfinal' file. |
151 |
|
o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
152 |
|
beginning/end of adjoint integration is accounted for. |
153 |
|
The current changes apply to TAF-1.4.26. |
154 |
|
TAF has one remaining bug, requiring one manual change |
155 |
|
(see MITgcm manual). |
156 |
|
o cal: synchronized between MAIN and ecco-branch |
157 |
|
|
158 |
|
checkpoint48i_post |
159 |
|
o Changes to restore differentiability of code w.r.t. previous tag |
160 |
|
(mostly adding new routines to make list and replacing |
161 |
|
pressure by totPhiHyd). |
162 |
|
o Updated and merged grdchk package |
163 |
|
- has both ADM and TLM checks |
164 |
|
- works for single- and multi-proc. |
165 |
|
- output cleaned |
166 |
|
- worked successfully for parallel DIVA |
167 |
|
o genmake: |
168 |
|
- Adding -platform=SP4 |
169 |
|
- Modif. for DEC Alpha (many don't have makedepend; use mkdep instead). |
170 |
|
o Modif. for DIVA: |
171 |
|
ctrl_unpack should not be called in intermediate DIVA interval. |
172 |
|
(similar thing would apply for active files such as |
173 |
|
tbar, sbar, psbar, which should not be reinitialised; |
174 |
|
only relevant for ecco-branch) |
175 |
|
|
176 |
|
checkpoint48h_post |
177 |
|
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
178 |
|
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
179 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
180 |
|
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
181 |
|
|
182 |
|
checkpoint48g_post |
183 |
|
--- EOS: |
184 |
|
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
185 |
|
store total Potential in totPhyHyd for diagnostics & EOS. |
186 |
|
o fix restart and overlap Pb when using Z-coord and EOS funct. of P |
187 |
|
--- Pressure/geopotential gradient: |
188 |
|
o use Ro_surf & R_low instead of hFac in cal_phi_hyd: |
189 |
|
o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind |
190 |
|
( changes results of global_ocean_pressure ) |
191 |
|
o NLFS + z-coord.: add eta*Rho' contribution. |
192 |
|
o accurate phiHyd when using interface-W at the middle between 2 centers |
193 |
|
( changes results of ideal_2D_oce ) |
194 |
|
o includes r* 2nd term in potential gradient. |
195 |
|
|
196 |
|
checkpoint48f_post |
197 |
|
Merging from release1_p12: |
198 |
|
o Modifications for using pkg/exf with pkg/seaice |
199 |
|
- improved description of the various forcing configurations |
200 |
|
- added basic radiation bulk formulae to pkg/exf |
201 |
|
- units/sign fix for evap computation in exf_getffields.F |
202 |
|
- updated verification/global_with_exf/results/output.txt |
203 |
|
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
204 |
|
(SBO) core products, including oceanic mass, center-of-mass, |
205 |
|
angular, and bottom pressure (see pkg/sbo/README.sbo). |
206 |
|
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
207 |
|
to avoid negative values in shallow regions. |
208 |
|
- updated verification/natl_box/results/output.txt |
209 |
|
- updated verification/lab_sea/results/output.txt |
210 |
|
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
211 |
|
o Added useSingleCpuIO option (see PARAMS.h). |
212 |
|
o Updated useSingleCpuIO option in mdsio_writefield.F to |
213 |
|
work with multi-field files, e.g., for single-file pickup. |
214 |
|
o pkg/seaice: |
215 |
|
- bug fix in growth.F: QNET for no shortwave case |
216 |
|
- added HeffFile for specifying initial sea-ice thickness |
217 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
218 |
|
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
219 |
|
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
220 |
|
o pkg/seaice: |
221 |
|
- adjoint-friendly modifications |
222 |
|
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
223 |
|
|
224 |
|
checkpoint48e_post |
225 |
|
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
226 |
|
o dynamics: change definition of computational domain & adapt mom_fluxform |
227 |
|
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
228 |
|
o following exp works with Olx=Oly=2 (and pass through checkbounds option): |
229 |
|
adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1 |
230 |
|
exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5 hs94.1x64x5 |
231 |
|
global_ocean.90x40x15 global_with_exf global_ocean_pressure |
232 |
|
inverted_barometer solid-body.cs-32x32x1 |
233 |
|
(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
234 |
|
|
235 |
|
checkpoint48d_post |
236 |
|
o in preparation for r*: |
237 |
|
a) use pre-computed gradient of hydrostatic potential: |
238 |
|
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
239 |
|
b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd: |
240 |
|
=> affects results of glob_oce_pressure (different truncation error) |
241 |
|
update output.txt of ideal_2D_oce & global_ocean_pressure |
242 |
|
|
243 |
|
checkpoint48d_pre |
244 |
|
o in preparation for r*: |
245 |
|
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
246 |
|
pass the 2 comp. of the grad. as arguments to momentum S/R. |
247 |
|
but for the moment, only used if it does not change the results. |
248 |
|
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
249 |
|
|
250 |
|
checkpoint48c_post |
251 |
|
Modifications in treatment of initial flux forcing controls |
252 |
|
to avoid extra storing of flux fields. |
253 |
|
|
254 |
|
checkpoint48c_pre |
255 |
|
o Added tidal_basin_2d experiment (currently 1D!) |
256 |
|
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
257 |
|
|
258 |
|
checkpoint48b_post |
259 |
|
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
260 |
|
(modification to pressure gradient not yet implemented) |
261 |
|
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
262 |
|
(for U & V) that are used for vertical advection of momentum. |
263 |
|
|
264 |
|
checkpoint48a_post |
265 |
|
o In preparation for r*, use temp. array to compute vertical transport |
266 |
|
in flux-form momentum pkg. => change results of few test-exp. |
267 |
|
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
268 |
|
lab_sea, natl_box & plume_on_slope |
269 |
|
|
270 |
|
checkpoint48 |
271 |
|
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
272 |
|
|
273 |
|
checkpoint47j_post |
274 |
|
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
275 |
|
o moved adexch from forward_step to addummy_in_stepping |
276 |
|
o added exch in ctrl_map_... |
277 |
|
o aveFreq.=0. at end of cost_final to avoid overwrite in |
278 |
|
reverse checkpointing loop |
279 |
|
o Yet more changes in gmredi: |
280 |
|
* adgmredi_calc_tensor |
281 |
|
avoiding all recomputation of gmredi_slope_limit |
282 |
|
* adgmredi_x/y/rtransport |
283 |
|
added flag for excessive storing to avoid recomp. of |
284 |
|
u/v/rtans, dTdx/y/z |
285 |
|
-> this is not really necessary and very memory-consuming |
286 |
|
* adgmredi_slope_psi: |
287 |
|
consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
288 |
|
* gmredi_slope_limit |
289 |
|
re-activated full calculation of taperfct for case 'ac02' |
290 |
|
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
291 |
|
|
292 |
|
checkpoint47i_post |
293 |
|
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
294 |
|
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
295 |
|
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
296 |
|
o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
297 |
|
o gmredi: fix few bugs. |
298 |
|
|
299 |
|
checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
300 |
|
This will be a good checkpoint to plug into the ecco-branch. |
301 |
|
o few modif.'s to get latest version adjointed |
302 |
|
(mainly kick out code in ini_linear_phisurf) |
303 |
|
o modif's to run adjoint with exactConserv |
304 |
|
o case GM_BOLUS_ADVEC should be cleaned |
305 |
|
S/R gmredi_slope_psi should be cleaned |
306 |
|
o verification/carbon now has exactConserv=.TRUE. |
307 |
|
|
308 |
|
checkpoint47g_post |
309 |
|
o time-average AIM output: becomes independent from statvars time-average |
310 |
|
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
311 |
|
o After TAF bug fix: |
312 |
|
Tested adjoint of gmredi package. |
313 |
|
Tests were done with checkpoint47 rather than with latest |
314 |
|
checkpoint47f_post since the latter is broken for the adjoint |
315 |
|
verification/carbon/ contains both ADM and TLM gradient checks. |
316 |
|
Here they are, before they get changed/lost/stolen. |
317 |
|
Mostly modif.'s to fix numerical sensitivities. |
318 |
|
Gradient checks OK for |
319 |
|
- GM_taper_scheme: |
320 |
|
* clipping |
321 |
|
* ac02 |
322 |
|
* linear |
323 |
|
* glw91 |
324 |
|
* dm95 |
325 |
|
* ldd97 |
326 |
|
- GMREDI_OPTIONS: |
327 |
|
* GM_VISBECK_VARIABLE_K |
328 |
|
* GM_NON_UNITY_DIAGONAL |
329 |
|
* GM_EXTRA_DIAGONAL |
330 |
|
* GM_BOLUS_ADVEC |
331 |
|
in conjunction with data.gmredi parameters to be checked in |
332 |
|
in a few minutes under verification/carbon/code/ |
333 |
|
|
334 |
|
checkpoint47f_post |
335 |
|
Merging from release1_p10: |
336 |
|
o modifications for using pkg/exf with pkg/seaice |
337 |
|
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
338 |
|
and SEAICE_EXTERNAL_FLUXES |
339 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
340 |
|
EXF_NO_BULK_COMPUTATIONS |
341 |
|
- usage examples are Experiments 8 and 9 in |
342 |
|
verification/lab_sea/README |
343 |
|
- verification/lab_sea default experiment now uses |
344 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
345 |
|
|
346 |
|
checkpoint47e_post |
347 |
|
o created a tag prior to creating a branch |
348 |
|
|
349 |
|
checkpoint47d_post |
350 |
|
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
351 |
|
at the bottom boundary had an erroneous half slip boundary condition |
352 |
|
o added bottom drag and no slip boundary condition capabilities to |
353 |
|
oceanic pressure coordinates code |
354 |
|
o added new verification experiment global_ocean_pressure, this experiment is |
355 |
|
also described in the tutorial section of the manual |
356 |
|
checkpoint47d_pre |
357 |
|
|
358 |
|
checkpoint47c_post |
359 |
|
o Added a verification experiment for a global cubed-sphere ocean run |
360 |
|
- verification/global_ocean.cubed32x32x30 |
361 |
|
- uses pkg/therm_seaice and pkg/bulk_forcing |
362 |
|
|
363 |
|
o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
364 |
|
o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
365 |
|
when using P-coordinate; only implemented for atmospheric config. |
366 |
|
o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
367 |
|
NOTES: requires option NONLIN_FRSURF to be "#define". |
368 |
|
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
369 |
|
|
370 |
|
checkpoint47b_post |
371 |
|
Merging from release1_p9: |
372 |
|
o pkg/seaice |
373 |
|
- removed GOTO's and added taf directives |
374 |
|
- double precision constants to reduce the g77 (Linux) |
375 |
|
to F77 (SGI) differences reported in release1_p8 |
376 |
|
o tools/genmake |
377 |
|
- added SGI options |
378 |
|
o verification/testscript |
379 |
|
- updated to that of checkpoint47a_post |
380 |
|
o verification/global_ocean.90x40x15/input/eedata |
381 |
|
- modified for SGI f77 compatibility |
382 |
|
o verification/lab_sea |
383 |
|
- added description of sea-ice model |
384 |
|
- added missing matlab routines |
385 |
|
- added test of thermodynamics parallelization |
386 |
|
|
387 |
|
checkpoint47a_post |
388 |
|
o new pkg: aim_v23 |
389 |
|
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
390 |
|
for now, keep the same surface forcing as before. |
391 |
|
- Part-Cell implemented into AIM; check that Heat & Water are conserved |
392 |
|
- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
393 |
|
- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
394 |
|
o add diagnostic of surface correction term in monitor output |
395 |
|
|
396 |
|
o bulk_force and therm_seaice |
397 |
|
- Two packages: bulk_force (Bulk forcing) |
398 |
|
and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
399 |
|
- Earlier integration from Stephaine Dutkiewicz |
400 |
|
and Patrick Heimbach. |
401 |
|
- Two ifdef statements for compile time, |
402 |
|
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
403 |
|
|
404 |
|
checkpoint47 |
405 |
|
differentiable version of checkpoint46n_post |
406 |
|
o bug fix in quasihydrostaticterms |
407 |
|
o * "clean" adjoint code (in terms of extensive recomputations) |
408 |
|
can now be obtained for all GMREDI options (i.e. for |
409 |
|
- GM_VISBECK_VARIABLE_K |
410 |
|
- GM_NON_UNITY_DIAGONAL |
411 |
|
- GM_EXTRA_DIAGONAL |
412 |
|
- GM_BOLUS_ADVEC ) |
413 |
|
* However, wrong gradient check problem remains unsolved. |
414 |
|
* New CPP options have been introduced for different |
415 |
|
tapering schemes |
416 |
|
o external_fields_load now part of differentiation list |
417 |
|
o pressure needs multiple storing; |
418 |
|
would be nice to have store_pressure at beginning or |
419 |
|
end of forward_step, e.g. by having phiHyd global (5-dim.) |
420 |
|
(NB: pressure is needed for certain cases in find_rho, |
421 |
|
which is also invoked through convective_adjustment). |
422 |
|
o recomputations in find_rho for cases |
423 |
|
'JMD95'/'UNESCO' or 'MDJWF' are OK. |
424 |
|
o #define ATMOSPHERIC_LOADING should be differentiable |
425 |
|
o ini_forcing shifted to begining of initialise_varia |
426 |
|
o Incorporating QNVS line search routines into MITgcm |
427 |
|
(this is separate code, and therefore not under pkg) |
428 |
|
lsopt/, optim/ |
429 |
|
o Updated verification/carbon/ |
430 |
|
- #define GM_VISBECK_VARIABLE_K |
431 |
|
- GM_taper_scheme = 'ldd97' |
432 |
|
|
433 |
|
checkpoint46n_post |
434 |
|
Merging from release1_p8: |
435 |
|
o verification/natl_box: |
436 |
|
updating new external_fields_load routine |
437 |
|
o New package: pkg/seaice |
438 |
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
439 |
|
The sea-ice code is based on Hibler (1979-1980). |
440 |
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
441 |
|
In addition to computing prognostic sea-ice variables and diagnosing |
442 |
|
the forcing/external data fields that drive the ocean model, |
443 |
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
444 |
|
The implied surface heat flux is then stored in variable |
445 |
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
446 |
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
447 |
|
non-local transport term. Because this call precedes model |
448 |
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
449 |
|
the freezing point by the time theta is dumped or time-averaged. |
450 |
|
N.B.: fairly large differences in accuracy occur across |
451 |
|
different platforms/compilers; comparison between |
452 |
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
453 |
|
generated output gives: |
454 |
|
T S U V |
455 |
|
C D M c m s m s m s m s |
456 |
|
n p a R g m m e . m m e . m m e . m m e . |
457 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
458 |
|
g d e n d n x n . n x n . n x n . n x n . |
459 |
|
|
460 |
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
461 |
|
o GAD: |
462 |
|
- generated new common blocks to account for call of |
463 |
|
same gad routines with differing traceridentities |
464 |
|
(needed to modify tracerIdentity indices in GAD.h) |
465 |
|
- generated separate common blocks for case useCubedSphereExchange |
466 |
|
(Department of Futurology) |
467 |
|
- parameter lists to gmredi_?transport: added tracerIdentity |
468 |
|
- added new key indices to tamc.h |
469 |
|
o external_fields_load: |
470 |
|
- added this routine to TAF list |
471 |
|
- needed to make some common blocks global and additional storing |
472 |
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
473 |
|
o exf: |
474 |
|
updated external forcing package |
475 |
|
- bug fixes carried over from ecco-branch |
476 |
|
(missing OBCS_OPTIONS.h in two routines) |
477 |
|
- enable easy to use "no forcing". |
478 |
|
- added exf I/O for atmospheric loading |
479 |
|
- added exf I/O for runoff data |
480 |
|
- transfered scaling between exf <-> MITgcm to exf namelist |
481 |
|
o Adding new verification experiment global_with_exf. |
482 |
|
This verification experiment is almost identical to the |
483 |
|
global_ocean.90x40x15 experiment, except that it uses |
484 |
|
the exf (and cal) package instead of the |
485 |
|
external_fields_load routine (cf README file). |
486 |
|
|
487 |
|
checkpoint46m_post |
488 |
|
o modified testscript to return -- when there are no lines of "%MON" output |
489 |
|
o added new flag "quasiHydrostatic" for QH mode |
490 |
|
and new routine quasihydrostaticterms() |
491 |
|
o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
492 |
|
New routine: mom_u_coriolis_nh() |
493 |
|
o fixed sign of non-hydrostatic metric terms in u and v equations. |
494 |
|
Depend on correct sign of gravitySign. |
495 |
|
o added work.pc* to .cvsignore in aim directories using ifc |
496 |
|
o introduced flag for controllin non-hydrostatic metric terms |
497 |
|
o removed gravitySign from PARM04 |
498 |
|
o switched to g77/ifc from pgf77 in aim experiments |
499 |
|
|
500 |
|
checkpoint46l_post |
501 |
|
o made convective adjustment work with pressure coordinates: |
502 |
|
- changed the direction of k-loop in convective_adjustment.F for the |
503 |
|
case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
504 |
|
- adjusted the reference pressure k-index in convective_adjustment.F |
505 |
|
- adjusted the convection condition in convect.F (in analogy to |
506 |
|
calc_ivdc.F) |
507 |
|
- convective_adjustment no longer computes anything on the halos |
508 |
|
- removed the warnings about negative salinity from find_rho.F and |
509 |
|
find_alpha.F; instead the new routine look_for_neg_salinity, called |
510 |
|
at the beginning of find_rho, find_alpha, and find_beta, does a |
511 |
|
check of the entire slice, if CPP-option |
512 |
|
CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
513 |
|
checkpoint46l_pre |
514 |
|
|
515 |
|
checkpoint46k_post |
516 |
|
o fixed the verification/global_ocean.90x40x15 experiment: |
517 |
|
- new bathymetry (the world according to A., JMC, and M.) |
518 |
|
- new initial fields and forcing fields (*.bin files) |
519 |
|
- new POLY3.COEFFS (for the next release one should switch to a full |
520 |
|
equation of state: JMD95P or MDJWF) |
521 |
|
- fixed several errors and redundancies in the data file |
522 |
|
- experiment uses looped cells |
523 |
|
- added matlab directory with diagnostic scripts for plotting of output |
524 |
|
|
525 |
|
o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
526 |
|
- read AIM physics parameters from a file (data.aimphys) |
527 |
|
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
528 |
|
|
529 |
|
checkpoint46j_post |
530 |
|
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
531 |
|
o move wVel computation at the end of the time step, in S/R integr_continuity |
532 |
|
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
533 |
|
o update timeave pkg for wVel diagnostic. |
534 |
|
checkpoint46j_pre |
535 |
|
|
536 |
|
checkpoint46i_post |
537 |
|
o Clean up AIM package (and keep the results unchanged): |
538 |
|
include CPP_OPTION and use IMPLICT NONE in all routines ; |
539 |
|
declare all the variables _RL ; use _d 0 for all numerical constants. |
540 |
|
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
541 |
|
|
542 |
|
checkpoint46h_post |
543 |
|
o cleaned up the use of rhoNil and rhoConst. |
544 |
|
- rhoNil should only appear in the LINEAR equation of state, everywhere |
545 |
|
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
546 |
|
and the dynamical equations are all divided by rhoConst |
547 |
|
o introduced new parameter rhoConstFresh, a reference density of fresh |
548 |
|
water, to remove the fresh water flux's dependence on rhoNil. The default |
549 |
|
value is 999.8 kg/m^3 |
550 |
|
o cleanup up external_forcing.F and external_forcing_surf.F |
551 |
|
- can now be used by both OCEANIC and OCEANICP |
552 |
|
checkpoint46h_pre |
553 |
|
|
554 |
|
Added code to convert surface volume flux (fresh water) into |
555 |
|
a mass flux when using P coordinates in the ocean (OCEANICP). |
556 |
|
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
557 |
|
|
558 |
|
checkpoint46g_post |
559 |
|
o Include a new diagnostic variable phiHydLow for the ocean model |
560 |
|
- in z-coordinates, it is the bottom pressure anomaly |
561 |
|
- in p-coordinates, it is the sea surface elevation |
562 |
|
- in both cases, these variable have global drift, reflecting the mass |
563 |
|
drift in z-coordinates and the volume drift in p-coordinates |
564 |
|
- included time averaging for phiHydLow, be aware of the drift! |
565 |
|
o depth-dependent computation of Bo_surf for pressure coordinates |
566 |
|
in the ocean (buoyancyRelation='OCEANICP') |
567 |
|
- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
568 |
|
Theta, Salinity, and Pressure in the parameter list. This routine is |
569 |
|
presently contained in find_rho.F. This routine does not give the |
570 |
|
correct density for 'POLY3', which would be a z-dependent reference |
571 |
|
density. |
572 |
|
o cleaned up find_rho |
573 |
|
- removed obsolete 'eqn' from the parameter list. |
574 |
|
o added two new verification experiments: gop and goz |
575 |
|
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
576 |
|
checkpoint46g_pre |
577 |
|
|
578 |
|
checkpoint46f_post |
579 |
|
o Enable tangent linear (forward mode) gradient checks: |
580 |
|
- extended active file handling to g_... files |
581 |
|
- added TANGENT_SIMULATION to theSimulationMode |
582 |
|
- extended grdchk package accordingly |
583 |
|
o added tangent linear setup in verification/carbon/code_ftl |
584 |
|
o added adjoint setup in verification/front_relax/code_ad |
585 |
|
|
586 |
|
checkpoint46e_post |
587 |
|
o Added new equation of state -> MDJWF |
588 |
|
- EOS of McDougall et al., 2002, JAOT, submitted |
589 |
|
- caveat: the equation of state is only valid for a smaller (more |
590 |
|
realistic?) range of values than JMD95P/Z and UNESCO |
591 |
|
- added masks to the calculation of pressure in store_pressure |
592 |
|
- added more check values for density in check_eos (ini_eos.F), some of |
593 |
|
the old check values are out of the range of the MDJWF-eos, so don't |
594 |
|
expect perfect matches for those |
595 |
|
checkpoint46e_pre |
596 |
|
|
597 |
|
checkpoint46d_post |
598 |
|
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
599 |
|
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
600 |
|
case of pressure coordinates. eosType='JMD95Z' in |
601 |
|
combination with buoyancyRelation='OCEANICP' now causes an error. |
602 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
603 |
|
in find_alpha/beta. |
604 |
|
checkpoint46d_pre |
605 |
|
|
606 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
607 |
|
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
608 |
|
|
609 |
|
checkpoint46c_post |
610 |
|
o Changes necessary for ocean in p-coordinates |
611 |
|
- Added new buoyancy relation = 'OCEANICP' |
612 |
|
- Added new parameters = gravitySign (this used to be contained inside |
613 |
|
the factor dRdZ which I added when we first switched to R coordinates). |
614 |
|
X GM/Redi is not compatible (yet) |
615 |
|
X bottom drag and no-slip need to be debugged. |
616 |
|
checkpoint46c_pre |
617 |
|
|
618 |
|
checkpoint46b_post |
619 |
|
o Added new equation of state -> JMD95Z and JMD95P |
620 |
|
- EOS of Jackett and McDougall, 1995, JAOT |
621 |
|
- moved all EOS parameters into EOS.h |
622 |
|
- new routines ini_eos.F, store_pressure.F |
623 |
|
o Added UNESCO EOS, but not recommended because it requires |
624 |
|
in-situ temperature (see JMD95) |
625 |
|
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
626 |
|
unesco.f to be used with POLY3 |
627 |
|
checkpoint46b_pre |
628 |
|
|
629 |
|
checkpoint46a_post |
630 |
|
o Added (atmospheric) pressure loading |
631 |
|
- new field in FFIELDS.h, etc... |
632 |
|
- new cpp flag ATMOSPHERIC_LOADING |
633 |
|
o Changed hFacC to _hFacC in calc_phi_hyd.F |
634 |
|
o Added SHORTWAVE_HEATING to some files for consistency |
635 |
|
checkpoint46a_pre |
636 |
|
|
637 |
|
checkpoint46 |
638 |
|
further merges from release1_p5 |
639 |
|
o new ctrl package |
640 |
|
- adopted from ECCO environment to enable optimization |
641 |
|
- added Eliassen Palm fluxes to controls |
642 |
|
o added Eliassen Palm flux controls to gradient check package |
643 |
|
o cost package |
644 |
|
- Compatible with new ctrl package |
645 |
|
- added Eliassen Palm cost hooks |
646 |
|
- modif's of existing cost functions |
647 |
|
o Adjoint-related bug fixes in kpp: |
648 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
649 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
650 |
|
o autodiff package |
651 |
|
- flow directives: |
652 |
|
+ new for S/R do_the_model_io |
653 |
|
+ enhanced for S/R checkpoint |
654 |
|
+ new gmredi.flow |
655 |
|
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
656 |
|
disable adcommon.h/g_common.h by default. |
657 |
|
- fixed problem for adjoint of global_max |
658 |
|
o modified verification/carbon/ |
659 |
|
o New setup for adjoint of global_ocean |
660 |
|
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
661 |
|
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
662 |
|
o incorporated hooks for sponge layer code (external_forcing.F) |
663 |
|
|
664 |
|
checkpoint45d_post |
665 |
|
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
666 |
|
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
667 |
|
(affects plume_on_slope "cg2d" output) |
668 |
|
o add new parameter deltaTfreesurf for free-surface time stepping |
669 |
|
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
670 |
|
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
671 |
|
o change phiMin in exp1 (to agree with documentation) |
672 |
|
o add new flags: |
673 |
|
- T,S forcing inside/outside Adams-Bashforth |
674 |
|
- turn off temp,salt advection and/or forcing |
675 |
|
- for each tracer, define internal flag for multiDimAdvection & A-B |
676 |
|
o monitor: change definition of KE to check conservation of Energy |
677 |
|
|
678 |
|
checkpoint45c_post |
679 |
|
o Removed f90 comments ("!") |
680 |
|
o Modified initialisations to enable exf package for MITgcm |
681 |
|
(without invoking ECCO_PACKAGE). |
682 |
|
o modifications to gradient check package (Martin Losch) |
683 |
|
- enable centered differences |
684 |
|
- modified format of standard output |
685 |
|
|
686 |
|
checkpoint45b_post |
687 |
|
o cleaned exchange calls in cg2d |
688 |
|
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
689 |
|
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
690 |
|
to configure barotropic setup (Martin Losch) |
691 |
|
o moved some initialisations within bi,bj loop in dynamics |
692 |
|
(TAF flow dependency) |
693 |
|
o in initialise_varia, moved call packages_init_variables |
694 |
|
before convective_adjustment_init |
695 |
|
(corresponding adjustment of TAF tape initialisation). |
696 |
|
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
697 |
|
|
698 |
|
checkpoint45a_post |
699 |
|
o compute Rho over the whole domain (extend iMin,jMin indices) |
700 |
|
o specific exchange for X-slice domain (case Ny=1) |
701 |
|
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
702 |
|
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
703 |
|
|
704 |
|
checkpoint44h_post = checkpoint45 |
705 |
|
o Fix to restore differentiability: |
706 |
|
place at which packages_init_variables is called in |
707 |
|
initialise_varia is crucial for reverse control flow. |
708 |
|
o modifications in GMRedi to enable stable adjoint |
709 |
|
(corresponding modif's in thermodynamics, dynamics) |
710 |
|
o added missing hook for sponge layer code in external_forcing |
711 |
|
o modified test cost functions |
712 |
|
o storing in gad_advection (plus removal of write(0,*)! |
713 |
|
o missing headers TR1.h added in convective_adjustment routines |
714 |
|
o errorMessageUnit set non-equal zero in eeboot |
715 |
|
(conflict on some platforms, e.g. IBM SP3) |
716 |
|
o modified carbon verif. |
717 |
|
|
718 |
|
checkpoint44h_pre |
719 |
|
o vertical grid option: allow to put the Interface at the middle between |
720 |
|
2 cell-centers ; replace delZ in pkg/kpp by drF. |
721 |
|
o GM Advective form: Tracers are advected using the residual transport (= |
722 |
|
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
723 |
|
|
724 |
|
checkpoint44g_post |
725 |
|
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
726 |
|
results) ; ifdef missing in thermodynamics.F |
727 |
|
|
728 |
|
checkpoint44f_pre,checkpoint44f_post |
729 |
|
o added PTRACERS package |
730 |
|
This allows an arbitrary number of passive tracers to be integrated |
731 |
|
forward simultaneously with the dynamicaly model. |
732 |
|
+ Implemented so far: |
733 |
|
- basic forward algorithm (time-stepping, advection, diffusion, convection) |
734 |
|
- I/O and checkpointing |
735 |
|
- GM/Redi *but* using the GM/Redi coefficient of Salt |
736 |
|
+ Not implemented so far: |
737 |
|
- KPP |
738 |
|
- OBCS |
739 |
|
+ No specific example supplied (yet) but global_ocean.90x40x15 has the |
740 |
|
necessary data.ptracer file. Simply use -enable=ptracers and uncomment |
741 |
|
line in data.pkg. |
742 |
|
+ This package is disabled by default since it increases storage. |
743 |
|
|
744 |
|
|
745 |
|
o testscript: added -cleanup option |
746 |
|
o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter |
747 |
|
b) enable to filter 2D fields. |
748 |
|
|
749 |
|
checkpoint44e_pre,post |
750 |
|
o re-wrote convective adjustment to use pre-calculated weights |
751 |
|
Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F |
752 |
|
Adds: model/src/convective_weights.F, convectively_mixtracer.F |
753 |
|
Original calls to convect() still in place. |
754 |
|
|
755 |
|
chkpt44d_pre,post |
756 |
|
o added missing EXCLUDE_MONITOR flags |
757 |
|
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
758 |
|
(incompatible typ in MIN/MAX expressions caused problems |
759 |
|
on IBM SP3) |
760 |
|
o in genmake added variable MAKEDEPEND |
761 |
|
plus resetting for case SunOS |
762 |
|
o added timer_stats.c routine for IBM SP3 |
763 |
|
o removed variables in dynamics |
764 |
|
!!! I forgot to create tag chkpt44d_pre !!! |
765 |
|
!!! But chkpt44d_pre = chkpt44c_post !!! |
766 |
|
|
767 |
|
o real fresh water flux implemented with non-linear free-surface. |
768 |
|
|
769 |
|
chkpt44c_pre,post |
770 |
|
o few fix (mask in shap_s2, EmPmR in external_field_load, |
771 |
|
USE_NATURAL_BCS in solve_for_P); |
772 |
|
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
773 |
|
|
774 |
|
checkpoint44b_pre/_post |
775 |
|
o merge of relevant stuff from the ecco-branch: |
776 |
|
- genmake: removed $S64 overwrite for case SunOS |
777 |
|
- pkg/exf: update and corrections for field swapping and obcs |
778 |
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
779 |
|
harmonized between ECCO and MITgcm |
780 |
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
781 |
|
updated checkpointing_lev... lists for obcs |
782 |
|
- model/src: minor changes in forward_step, plot_field |
783 |
|
added directive for divided adjoint in the_main_loop |
784 |
|
- pkg/mdsio: added mdsio_gl_slice |
785 |
|
|
786 |
|
o check parameters & config (chkpt44a_pre,post) |
787 |
|
o OBC and NonLin_FrSurf. |
788 |
|
|
789 |
|
checkpoint44 |
790 |
|
o fix bug in mom_vi_del2uv |
791 |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
792 |
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
793 |
|
o update AIM experiments (NCEP input files) |
794 |
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
795 |
|
o added some stuff for AD |
796 |
|
|
797 |
|
checkpoint43 |
798 |
|
o added two new advection tests |
799 |
|
o added global 4x4 degree ocean test |
800 |
|
o added test of H&S94 with free surface on cube |
801 |
|
o some final mods for gradient check, adjoint,... |
802 |
|
|
803 |
|
checkpoint42 |
804 |
|
Fixed AD-related problems: |
805 |
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
806 |
|
(mainly thermodynamics.F) |
807 |
|
o New store directives for multi-dim. advection schemes |
808 |
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
809 |
|
* new common block and key passkey |
810 |
|
(mainly gad_advection.F) |
811 |
|
o Modified store directives for split of dynamics/thermodynamics |
812 |
|
for the case ALLOW_KPP |
813 |
|
o Cleaned argument list for timestep_tracer.F |
814 |
|
|
815 |
|
checkpoint41 |
816 |
|
o re-formatted/added comments in prologues of key subroutines |
817 |
|
to work with protex |
818 |
|
|
819 |
|
checkpoint40 |
820 |
|
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
821 |
|
o added FLT (floats) package from Arne along with demo. experiment |
822 |
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
823 |
|
implementation of forward-in-time forcing terms |
824 |
|
o more mods for non-linear free-surface including new variable |
825 |
|
o modified multi-dim method to work on cube |
826 |
|
o bug fix in KPP (from DM) |
827 |
|
|
828 |
|
checkpoint40pre9 |
829 |
|
o added DST advection schemes |
830 |
|
o fix MPI bug on SGI's |
831 |
|
o modifications for non-linear free-surface |
832 |
|
o fixed conditionals for fixed flow/passive tracer only mode |
833 |
|
o added tension/strain form of stress tensor |
834 |
|
o changes to commenting of arguments for TAF/TAMC |
835 |
|
o added/updated many matlab scripts |
836 |
|
o added multi-dimensional advection method for tracers |
837 |
|
|
838 |
|
checkpoint40pre8 |
839 |
|
o new package rw/ |
840 |
|
Added method for dumping intermediate local arrays: |
841 |
|
mdsio_writetile - same as mdsio_writefield except works from inside |
842 |
|
bi,bj loop |
843 |
|
mdsio_writelocal - same as mdsio_writetile except works for local |
844 |
|
arrays |
845 |
|
write_local_r? - higher-level wrapper for mdsio_writelocal |
846 |
|
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
847 |
|
Example given at end of mom_vecinv.F that dumps some local arrays. |
848 |
|
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
849 |
|
control flux-form versus vector invariant code. |
850 |
|
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
851 |
|
or genmake -DISABLE ... |
852 |
|
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
853 |
|
(additional storing is now needed for case vecinv; |
854 |
|
currently nothing implemented to switch this storing off |
855 |
|
in case fluxform is used since no CPP flag available). |
856 |
|
|
857 |
checkpoint40pre7 |
checkpoint40pre7 |
858 |
o bug fix in dynamics.F |
o bug fix in dynamics.F |
859 |
calc_viscosity called before k=1,Nr loop. |
calc_viscosity called before k=1,Nr loop. |