--- MITgcm/doc/tag-index	2005/04/06 20:19:34	1.472
+++ MITgcm/doc/tag-index	2005/06/15 16:01:14	1.497
@@ -1,10 +1,67 @@
-$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.472 2005/04/06 20:19:34 heimbach Exp $
+$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.497 2005/06/15 16:01:14 molod Exp $
+$Name:  $
 
     Notes on tags used in MITgcmUV
     ==============================
 
+o Diagnostics package was changed: diagnostic allocation is now deactivated
+  by setting an empty file name in the namelist (used to be by setting 0 frequency)
+o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ;
+  add 1rst Order upwind vertical Shear.
+o add a quick fix for A/B checkpointing in OFFLINE mode
+o add IGNORE_TIME define and -ignore_time option to genmake2 as an
+  end-run around the C/Fortran linking horror in eesup/src/timers.F
+o added pkg/runclock: allows user to terminate run based on wall clock
+o added non-hydrostatic scaling parameter: nh_am2
+o pkg/my82: futile attempt to make results compiler-independent by adding
+  some "_d 0", etc. no effect.
+o for mnc output, fill the 'T' coordinate var with myTime and create a 
+  separate 'iter' variable for iteration count
+o pkg/diagnostics: 
+  add new capability: output of Global/Regional & per-level statistics ;
+  tested against monitor output (including land & thSIce) on various exp.
+o make seaice-pkg I/O type flags (MNC/MDS) more standard.
+
+checkpoint57h_done
+  tag after changing user customized files (DIAGNOSTICS_SIZE.h, 
+  data.diagnostics, data.gchem, data.ptracers) is done.
+
+o pkg/diagnostics: prepare for Global/Regional statistics. 
+  add 2nd namelist in data.diagnostics and update DIAGNOSTICS_SIZE.h 
+o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE
+  and rename it: DIFFERENT_MULTIPLE
+
+checkpoint57h_post
+o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers
+o pkg/diagnostics: change output frequency, now in seconds (instead
+  of Nb of iterations). This requires to change data.diagnostics.
+checkpoint57h_pre
+
+o in mnc, let the user create the output dir if both mnc_outdir_date
+  and mnc_outdir_num are false
+o add fflags() to pkg/diagnostics which allows one to specify, on a
+  per-file basis, the file precision [default behavior is unchanged]
+o added diagnostics to pkg/kpp, including computation of mixed layer
+  depth based on a temperature/density criterion
+o updated verification/natl_box to test the new pkg/kpp diagnostics
+o bugs fixed (with useAbsVorticity=T & with useJamartMomAdv=T)
+o test AB-3 code with 4th.Order advection scheme (advect_xy/input.ab3_c4)
+o fix mnc flags in pkg/seaice so that they are "owned" by seaice,
+  not mnc -- this mistake was found by JMC and is now corrected
+
+checkpoint57g_post
+o add Adams-Bashforth 3rd Order time stepping:
+  - default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3)
+  - not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ...
+checkpoint57g_pre
+
 o make lambda[Theta,Salt]ClimRelax spatially varying
   (default remains spatially uniform constant based on tau)
+o added new control variables
+  * init. uVel, vVel, etanN
+  * lambda[Theta,Salt]ClimRelax
+o separate masks used for ctrl_pack/unpack 'from write_grid' output
+  (suggested by G. Forget)
 
 checkpoint57f_post
 o add parameter "baseTime" = model base time = time at iteration zero
@@ -34,7 +91,7 @@
 
 checkpoint57e_post
 o Adding eddy stress controls a la Ferreira et al.
-checkpoint57e_pre
+checkpoint57e_pre (actually was tagged: eckpoint57e_pre)
 
 o fizhi pkg: fix AtoC and CtoA when called with same input & output array
   update output.txt of exp. fizhi-gridalt-hs