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revision 1.272 by edhill, Mon Mar 29 22:10:28 2004 UTC revision 1.306 by jmc, Thu Jun 3 16:49:35 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing.
7    o added Sadourny discretization of Coriolis
8      - moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h
9      - re-enabled use of omega3 (useAbsVorticity)
10    o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for
11      vector-invarianet equations
12      - note: does *NOT* yet use same variable visc. for no-slip BC's.
13    o recoded the lateral boundary conditions for non-hydrostatic w, this time
14      hopefully without new bugs
15      - still to do: biharmonic friction for non-hydrostatic w
16    o bug fix for mom_*_sidedrag: rA -> rAs,rAw
17    o regenerated output for global_ocean_ebm (using -ieee)
18    o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation
19      of mom_common/
20      - simple re-arrangement of instructions within computing loop
21    checkpoint53d_pre
22    
23    checkpoint53c_post
24    o new version of coupler for AIM+thSIce and Ocean models
25     - new fields (SSS,h_MixLayer ...) are exchanged through the coupler
26     - land: change Evaporation of snow
27     - aim with thSIce: fix bug in snow-precip.
28    o changes to calc_gw.F
29     - bug fix for w^2 term near the bottom boundary
30     - (hopefully) improve the lateral slip boundary condtions for use with
31        partial/looped cells
32      - because the bug fix changes two verification experiments anyway (exp5
33        and plume on slope), change the lateral boundary condition from half slip
34        to the value of no_slip_sides
35    o ebm package wasnt quite up to the parallel task. Fixed that.
36    o Adjoint of EBM package + verification
37      * TLM OK
38      * ADM not sufficient accuracy yet (needs further testing)
39    
40    checkpoint53b_post
41    o Commiting new energy balance model to repository
42      * package is pkg/ebm
43      * verif. is verification/global_ocean_ebm
44      * references are in ebm_driver.F
45    C      * X. Wang, P. Stone and J. Marotzke, 1999:
46    C        Global thermohaline circulation. Part I:
47    C        Sensitivity to atmospheric moisture transport.
48    C        J. Climate 12(1), 71-82
49    C      * X. Wang, P. Stone and J. Marotzke, 1999:
50    C        Global thermohaline circulation. Part II:
51    C        Sensitivity with interactive transport.
52    C        J. Climate 12(1), 83-91
53    C      * M. Nakamura, P. Stone and J. Marotzke, 1994:
54    C        Destabilization of the thermohaline circulation
55    C        by atmospheric eddy transports.
56    C        J. Climate 7(12), 1870-1882
57    o Will need long integration testing.
58    checkpoint53b_pre
59    
60    o created pkg/mom_common in preparation for variable viscosity code
61    o renamed and split ini_mnc_io
62    o pkg/land: only liquid water can diffuse or run-off
63    o AIM using land: soil wetness availability account for snow
64    o added printMapIncludesZeros to EEPARMS namelist
65    
66    checkpoint53a_post
67    o restore TAMC compatiility for exf_constants.h
68      (no usage of _d in .h)
69    o Additional storing in KPP in an attempt to fix
70      TAMC problem with adjoint of KPP code.
71      (no success...)
72      Identical code works fine with TAF.
73    o Fixed verification/natl_box_adjoint experiments.
74      Initial conditions for Experiments 4 and 5 are now
75      set to "SEAICE_initialHEFF=0", which is more reasonable,
76      and hence gives results closer to that of Experiment 2.
77      Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again.
78    
79    checkpoint53
80    o stable checkpoint with up to date adjoint
81      TLM tests only run for 1st grdchk at the moment. Its unclear if
82      this is a code problem or a problem with resetting code for g_
83      variables that is being autogenerated wrong.
84      Otherwise:
85       o code is testing well on Linux (P4 and AMD), SGI Alitix and Irix.
86       o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ)
87         are both still in chaos following their security messes.
88    
89    checkpoint52n_post
90    o various build (mostly genmake2) changes including:
91      - ability to build/run more easily within Cygwin and MacOS X
92      - more complicated Makefiles with a stronger dependence on Gnu Make
93    o pkg/seaice modifications
94      - added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost
95        of pkg/seaice.  For time being, SEAICE_deltaTtherm = deltaTtracer
96        and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm
97      - changed proxy for geostrophic velocity and updated
98        verification/lab_sea/results/* accordingly
99      - removed ADI dynamic solver from pkg/seaice
100      - replaced all occurrences of 1/CSTICE or 1/CSUICE
101        they caused a segmentation fault under certain circumstances
102      - removed unused field WATR
103    o bug fix in exf-package:
104      -  u/vwind are defined at tracer/pressure points. The values of u/vwindmask
105         now reflect that.
106    o small fixes in the cal-package:
107      - set reference date to first of January for the 'model'-calendar
108      - failing of cal_CheckDate in cal_FullDate now actually results in a
109        warning
110    o small modifications in exf-package to increase flexibility:
111      - change climtempfreeze from a constant to a runtime parameter that
112        is specified in data.exf_clim (default = -1.9)
113      - introduce runtime parameter windstressmax (default = 2.0) that is
114        specified in data.exf
115    o fix in pkg/thsice:
116      - update Evap (Tsf changes) to be consistent with Latent heat flux
117      - maintain snow precipitation unchanged (even if Tsf >=0).
118     both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice
119    
120    checkpoint52m_post
121    o commented out call to cal_GetMonthsRec in swfrac.F and added some comments;
122      this does not change any of the results, because myIter=0 in swfrac always
123      lead to jwtype=2 (the default anyway), but the call makes little sense
124      as a default
125    o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated
126    o re-work pkg/thsice interface with ocean & bulk_force pkg to allow
127      atmospheric model (AIM) to use it ; add a "slab ocean" component.
128    o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice)
129    o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice
130    o extending useSingleCpuIO option to work with new exch2 I/O format
131      - old-style, missing-tile I/O is still accessible by defining CPP
132        option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h
133    o monitor package can write to NetCDF files and/or STDOUT
134    o fix re-definition bug in MNC_GRID_INIT_ALL()
135  o doc/api_reference added  o doc/api_reference added
136    - a framework for building an API Reference Manual using all    - a framework for building an API Reference Manual using all
137      the "protex" comments embedded in the code      the "protex" comments embedded in the code

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