3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
o more obcs stuff |
7 |
|
- added obcs_external_fields_load as an alternative to the EXF-pkg option |
8 |
|
for reading boundary values. This routine is called from |
9 |
|
obcs_prescribe_read |
10 |
|
- updated obcs_check |
11 |
|
|
12 |
|
checkpoint55c_post |
13 |
|
o obcs stuff |
14 |
|
- new runtime flags useOBCSprescribe, useOBCSbalance |
15 |
|
- re-arranged obcs_calc |
16 |
|
- moved exf_getobcs to obcs_prescibe_read |
17 |
|
obcs_prescibe_read is called after ORLANSKI stuff |
18 |
|
and independent of it (executable can contain all). |
19 |
|
- updated obcs_check |
20 |
|
- added exchanges for U,V,gU,gV for useOBCSprescribe=.TRUE. |
21 |
|
These may be necessary only if tangential velocities are |
22 |
|
prescribed at OB, not sure, needs testing. |
23 |
|
o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments |
24 |
|
which simplifies the calls and passes the ifc check-bounds test |
25 |
|
|
26 |
|
checkpoint55b_post |
27 |
|
o add a 2D scalar, Z location, exchange_2 routine. |
28 |
|
o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows |
29 |
|
to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)] |
30 |
|
affects advect_cs results (for the wrong reason): update output.txt |
31 |
|
o use a more standard discretization for biharmonic viscosity ; |
32 |
|
(original version still available with #define MOM_VI_ORIGINAL_VISCA4 ) |
33 |
|
affects results of dome set-up: update output.txt |
34 |
|
o fix gad_advection.F (CubedSphere part), back to version 1.23 |
35 |
|
o fix bug in mom_vi_del2uv.F (CubedSphere part). |
36 |
|
|
37 |
|
checkpoint55a_post |
38 |
|
o merged code to |
39 |
|
* prescribe/read time-dependent open boundaries |
40 |
|
(works in conjunction with exf, cal) |
41 |
|
* sponge layer code for open boundaries |
42 |
|
* each boundary N/S/E/W now has its own CPP option |
43 |
|
(healthy for the adjoint) |
44 |
|
|
45 |
|
checkpoint55 |
46 |
|
o up-to-date adjoint of previous breaks |
47 |
|
- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
48 |
|
- global_ocean_ebm: adjoint still needs fix (TLM ok) |
49 |
|
- global_ocean.90x40x15: extended GMREDI_OPTIONS.h |
50 |
|
- carbon: * remove tr1-related adjoint verification |
51 |
|
* add ptracer as control variable |
52 |
|
o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
53 |
|
(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
54 |
|
|
55 |
|
checkpoint54f_post |
56 |
|
o in verification/carbin/ remove experiment related to |
57 |
|
ALLOW_PASSIVE_TRACER (array tr1 etc) |
58 |
|
code_ad/ input_ad/ results_ad |
59 |
|
|
60 |
|
o add two new packages |
61 |
|
- ggl90, TKE-model of Gaspar et al. (1990), Blanke+Delecluse (1993) |
62 |
|
+ subject to optimization (memory) |
63 |
|
- opps, OPPS (ocean penetrative plume scheme) of Paluszkiewicz+Romea (1997) |
64 |
|
+ subject to reordering (many GOTOs in the original code) |
65 |
|
+ so far opps is called for every (i,j) point, and then operates in |
66 |
|
the vertical; one may want to reorder the scheme in order operate in |
67 |
|
horizontal slabs at the cost of (a lot of) memory, at least ten new 3D |
68 |
|
fields) |
69 |
|
o overhaul of IO so that we now have flags for MDSIO and/or MNC |
70 |
|
- all verification tests compile and run with linux_ia32_g77 |
71 |
|
- defaults are compatible with current input files--nothing |
72 |
|
should change if you were not previously using MNC |
73 |
|
- MNC output has been added in numerous places (eg. timeave) |
74 |
|
but there are still a few writes not yet do-able with MNC |
75 |
|
(this is in progress) |
76 |
|
- flags now allow for either/or/both use of MDSIO and MNC and |
77 |
|
documentation will soon follow |
78 |
|
- numerous small formatting cleanups for ProTeX |
79 |
|
o add version info (via BUILD_INFO.h) to MNC and stdout |
80 |
|
|
81 |
|
checkpoint54e_post |
82 |
|
o add two new packages |
83 |
|
- pp81 (Packanowski and Philander, 1981), Richardson number and |
84 |
|
stratification dependent mixing |
85 |
|
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
86 |
|
- these scheme operate in a similar manner as KPP (without ghat, of |
87 |
|
course), however there is only one diffusivity that is used for both |
88 |
|
temperature and salinity (and passive tracers)ç |
89 |
|
o add offline package |
90 |
|
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
91 |
|
provided by Stephanie Dutkiewicz |
92 |
|
o genmake2: add ability to search for C compilers and cleanup test output |
93 |
|
- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
94 |
|
|
95 |
|
checkpoint54d_post |
96 |
|
o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
97 |
|
o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
98 |
|
leading to additional shift by 5 days each year of integration |
99 |
|
(i.e. leading to considerable offset over the years) |
100 |
|
o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep |
101 |
|
o start with no AB and no initial filtering (staggerTimeStep): |
102 |
|
change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5 |
103 |
|
o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F |
104 |
|
(external loading & cpl import/export stay in forward_step.F) |
105 |
|
o update coupling interface to work with new staggerTimeStep |
106 |
|
o change MDSIO ptracers_pickup. |
107 |
|
o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F); |
108 |
|
o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
109 |
|
o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
110 |
|
|
111 |
|
checkpoint54c_post |
112 |
|
o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
113 |
|
this affects (truncation error) output.txt of test-exp: |
114 |
|
global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
115 |
|
o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array) |
116 |
|
o change Qnet to always be the net heat flux, (+upward). |
117 |
|
affects (truncation error) output of natl_box exp.: updated |
118 |
|
o define the max number of passive tracers in PTRACERS_SIZE.h |
119 |
|
o start to test mnc routinely in exp0 |
120 |
|
o add sea-ice loading (sIceLoad) as a new forcing field. |
121 |
|
|
122 |
|
checkpoint54b_post |
123 |
|
o add testreport "-j JOBS" option for parallel builds (tested and pretty |
124 |
|
impressive on Altix and Opteron systems) |
125 |
|
o diagnostics can now write NetCDF files through the mnc package |
126 |
|
o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output |
127 |
|
o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added |
128 |
|
o staggerTimeStep & NLFS: rescale T & S surface tendencies. |
129 |
|
affects (truncation error) output of lab_sea & natl_box exp.: updated |
130 |
|
o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.) |
131 |
|
|
132 |
|
checkpoint54a_post |
133 |
|
o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order). |
134 |
|
o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.) |
135 |
|
o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished) |
136 |
|
o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D) |
137 |
|
+ internal_wave (shift in writing cg2d_ini_res) |
138 |
|
checkpoint54a_pre |
139 |
|
|
140 |
|
o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice |
141 |
|
- modified verification/lab_sea and natl_box_adjoint accordingly |
142 |
|
|
143 |
|
checkpoint54 |
144 |
|
checkpoint53g_post |
145 |
|
o prepare splitting of thermodynamics: store convect.counter in common block |
146 |
|
o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error) |
147 |
|
output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave |
148 |
|
o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection |
149 |
|
o new parameter "nShapS": allow to treat differently S from T (nShapT) |
150 |
|
o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S) |
151 |
|
o restore adjointability |
152 |
|
|
153 |
|
checkpoint53f_post |
154 |
|
o modifications that affect AIM experiment results (update output.txt): |
155 |
|
- no advection of S at top interface Nr (pkg/generic_advdiff) |
156 |
|
- air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F) |
157 |
o AIM pkg: |
o AIM pkg: |
158 |
- include stability function into surf.Flux derivative relative to Tsurf |
- include stability function into surf.Flux derivative relative to Tsurf |
159 |
- calculate clear-sky radiation & surface temp. change (for diagnostics) |
- calculate clear-sky radiation & surface temp. change (for diagnostics) |
160 |
|
|
161 |
checkpoint53e_post |
checkpoint53e_post |
162 |
o merged cylindrical coord configuration |
o merged cylindrical coord configuration |
163 |
o added rotating_tank experiment |
o added rotating_tank experiment |